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Volumn 72, Issue 9, 1998, Pages 7510-7522

Identification of specific nucleotide sequences within the conserved 3'- SL in the dengue type 2 virus genome required for replication

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SUBSTITUTION; ANIMAL CELL; ARTICLE; DENGUE VIRUS; KIDNEY CELL; MONKEY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; THERMODYNAMICS; VIROGENESIS; VIRUS MUTATION; VIRUS REPLICATION;

EID: 0031849664     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.72.9.7510-7522.1998     Document Type: Article
Times cited : (164)

References (34)
  • 1
    • 0029066118 scopus 로고
    • The rubella virus RNA binding activity of human calreticulin is localized to the N-terminal domain
    • Atreya, C. D., N. K. Singh, and H. L. Nakhasi. 1995. The rubella virus RNA binding activity of human calreticulin is localized to the N-terminal domain. J. Virol. 69:3848-3851
    • (1995) J. Virol. , vol.69 , pp. 3848-3851
    • Atreya, C.D.1    Singh, N.K.2    Nakhasi, H.L.3
  • 2
    • 0026045893 scopus 로고
    • HIV-1 Rev regulation involves recognition of non-Watson-Crick base pairs in the viral RNA
    • Bartel, D. P., M. L. Zapp, M. R. Green, and J. W. Szostak. 1991. HIV-1 Rev regulation involves recognition of non-Watson-Crick base pairs in the viral RNA. Cell 17:529-536.
    • (1991) Cell , vol.17 , pp. 529-536
    • Bartel, D.P.1    Zapp, M.L.2    Green, M.R.3    Szostak, J.W.4
  • 3
    • 0029149642 scopus 로고
    • BHK cell proteins that bind to the 3′ stem-loop structure of the West Nile virus genome RNA
    • Blackwell, J. L., and M. A. Brinton. 1995. BHK cell proteins that bind to the 3′ stem-loop structure of the West Nile virus genome RNA. J. Virol. 69: 5650-5658.
    • (1995) J. Virol. , vol.69 , pp. 5650-5658
    • Blackwell, J.L.1    Brinton, M.A.2
  • 4
    • 0030761459 scopus 로고    scopus 로고
    • Translation elongation factor-1 alpha interacts with the 3′ stem-loop region of West Nile virus genomic RNA
    • Blackwell, J. L., and M. A. Brinton. 1997. Translation elongation factor-1 alpha interacts with the 3′ stem-loop region of West Nile virus genomic RNA. J. Virol. 71:6433-6444.
    • (1997) J. Virol. , vol.71 , pp. 6433-6444
    • Blackwell, J.L.1    Brinton, M.A.2
  • 5
    • 0002780290 scopus 로고
    • Replication of flaviviruses
    • S. Schlesinger and M. Schlesinger (ed.), Plenum Press, New York, N.Y.
    • Brinton, M. A. 1986. Replication of flaviviruses, p. 327-374. In S. Schlesinger and M. Schlesinger (ed.), The Togaviridae and the Flaviviridae. Plenum Press, New York, N.Y.
    • (1986) The Togaviridae and the Flaviviridae , pp. 327-374
    • Brinton, M.A.1
  • 6
    • 0022472318 scopus 로고
    • The 3′-nucleotides of flavivirus genomic RNA form a conserved secondary structure
    • Brinton, M. A., A. V. Fernandez, and J. H. Dispoto. 1986. The 3′-nucleotides of flavivirus genomic RNA form a conserved secondary structure. Virology 153:113-121.
    • (1986) Virology , vol.153 , pp. 113-121
    • Brinton, M.A.1    Fernandez, A.V.2    Dispoto, J.H.3
  • 7
    • 0023853793 scopus 로고
    • Sequence and secondary structure analysis of the 5′-terminal region of flavivirus genome RNA
    • Brinton, M. A., and J. H. Dispoto. 1987. Sequence and secondary structure analysis of the 5′-terminal region of flavivirus genome RNA. Virology 162: 290-299.
    • (1987) Virology , vol.162 , pp. 290-299
    • Brinton, M.A.1    Dispoto, J.H.2
  • 8
    • 0028930544 scopus 로고
    • Growth-restricted dengue virus mutants containing deletions in the 5′-noncoding region of the dengue virus genome
    • Cahour, A., A. Pletnev, M. Vazeille-Falcoz, L. Rosen, and C.-J. Lai. 1995. Growth-restricted dengue virus mutants containing deletions in the 5′-noncoding region of the dengue virus genome. Virology 207:68-76.
    • (1995) Virology , vol.207 , pp. 68-76
    • Cahour, A.1    Pletnev, A.2    Vazeille-Falcoz, M.3    Rosen, L.4    Lai, C.-J.5
  • 9
  • 10
    • 0031001919 scopus 로고    scopus 로고
    • RNA-protein interactions: Involvement of NS3, NS5, and 3′ noncoding regions of Japanese encephalitis virus genomic RNA
    • Chen, C.-J., M.-D. Kuo, L.-J. Chien, S.-L. Hsu, Y.-M. Wang, and J.-H. Lin. 1997. RNA-protein interactions: involvement of NS3, NS5, and 3′ noncoding regions of Japanese encephalitis virus genomic RNA. J. Virol. 71:3466-3473.
    • (1997) J. Virol. , vol.71 , pp. 3466-3473
    • Chen, C.-J.1    Kuo, M.-D.2    Chien, L.-J.3    Hsu, S.-L.4    Wang, Y.-M.5    Lin, J.-H.6
  • 11
    • 0022388391 scopus 로고
    • Stable secondary structure at the 3′ end of the genome of yellow fever virus (17D vaccine strain)
    • Grange, T., M. Bouloy, and M. Girard. 1985. Stable secondary structure at the 3′ end of the genome of yellow fever virus (17D vaccine strain). FEBS Lett. 188:159-163.
    • (1985) FEBS Lett. , vol.188 , pp. 159-163
    • Grange, T.1    Bouloy, M.2    Girard, M.3
  • 12
    • 0024603620 scopus 로고
    • Sequence analysis of cloned dengue virus type 2 genome (New Guinea C strain)
    • Irie, K., P. M. Mohan, Y. Sasaguri, R. Putnak, and R. Padmanabhan. 1989. Sequence analysis of cloned dengue virus type 2 genome (New Guinea C strain). Gene 75:197-211.
    • (1989) Gene , vol.75 , pp. 197-211
    • Irie, K.1    Mohan, P.M.2    Sasaguri, Y.3    Putnak, R.4    Padmanabhan, R.5
  • 13
    • 0027229229 scopus 로고
    • Biochemical and genetic evidence for a pseudoknot structure at the 3′ terminus of the poliovirus RNA genome and its role in viral RNA amplification
    • Jacobson, S. J., D. A. M. Konings, and P. Sarnow. 1993. Biochemical and genetic evidence for a pseudoknot structure at the 3′ terminus of the poliovirus RNA genome and its role in viral RNA amplification. J. Virol. 67:2961-2971.
    • (1993) J. Virol. , vol.67 , pp. 2961-2971
    • Jacobson, S.J.1    Konings, D.A.M.2    Sarnow, P.3
  • 14
    • 0026443665 scopus 로고
    • Attenuation of Sindbis virus neurovirulence by using defined mutations in nontranslated regions of the genome RNA
    • Kuhn, R. J., D. E. Griffin, H. Zhang, H. G. Niesters, and J. H. Strauss. 1992. Attenuation of Sindbis virus neurovirulence by using defined mutations in nontranslated regions of the genome RNA. J. Virol. 66:7121-7127.
    • (1992) J. Virol. , vol.66 , pp. 7121-7127
    • Kuhn, R.J.1    Griffin, D.E.2    Zhang, H.3    Niesters, H.G.4    Strauss, J.H.5
  • 16
    • 0029893436 scopus 로고    scopus 로고
    • Dengue type 4 virus mutants containing deletions in the 3′ noncoding region of the RNA genome: Analysis of growth restriction in cell culture and altered viremia pattern and immunogenicity in rhesus monkeys
    • Men, R., M. Bray, D. Clark, R. M. Chanock, and C.-J. Lai. 1996. Dengue type 4 virus mutants containing deletions in the 3′ noncoding region of the RNA genome: analysis of growth restriction in cell culture and altered viremia pattern and immunogenicity in rhesus monkeys. J. Virol. 70:3930-3937.
    • (1996) J. Virol. , vol.70 , pp. 3930-3937
    • Men, R.1    Bray, M.2    Clark, D.3    Chanock, R.M.4    Lai, C.-J.5
  • 17
    • 0025751709 scopus 로고
    • Detection of stable secondary structure at the 3′ terminus of dengue virus type 2 RNA
    • Mohan, P. M., and R. Padmanabhan. 1991. Detection of stable secondary structure at the 3′ terminus of dengue virus type 2 RNA. Gene 108:185-191.
    • (1991) Gene , vol.108 , pp. 185-191
    • Mohan, P.M.1    Padmanabhan, R.2
  • 18
    • 0028355518 scopus 로고
    • Dengue: The risk to developed and developing countries
    • Monath, T. P. 1994. Dengue: the risk to developed and developing countries. Proc. Natl. Acad. Sci. USA 91:2395-2400.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 2395-2400
    • Monath, T.P.1
  • 20
    • 0030999551 scopus 로고    scopus 로고
    • Infectious RNA transcripts from full-length dengue virus type 2 cDNA clones made in yeast
    • Polo, S., G. Ketner, R. Levis, and B. Falgout. 1997. Infectious RNA transcripts from full-length dengue virus type 2 cDNA clones made in yeast. J. Virol. 71:5366-5374.
    • (1997) J. Virol. , vol.71 , pp. 5366-5374
    • Polo, S.1    Ketner, G.2    Levis, R.3    Falgout, B.4
  • 21
    • 0021863828 scopus 로고
    • Nucleotide sequence of yellow fever virus: Implications for flavivirus gene expression and evolution
    • Rice, C. M., E. M. Lenches, S. R. Eddy, S. J. Shin, R. L. Sheets, and J. H. Strauss. 1985. Nucleotide sequence of yellow fever virus: implications for flavivirus gene expression and evolution. Science 229:726-735.
    • (1985) Science , vol.229 , pp. 726-735
    • Rice, C.M.1    Lenches, E.M.2    Eddy, S.R.3    Shin, S.J.4    Sheets, R.L.5    Strauss, J.H.6
  • 22
    • 0023472472 scopus 로고
    • Tricinc-sodium dodecyl sulfatepolyacrylamide gel electrophoresis
    • Schagger, H., and G. Von Jagow. 1987. Tricinc-sodium dodecyl sulfatepolyacrylamide gel electrophoresis. Anal. Biochem. 166:368-379.
    • (1987) Anal. Biochem. , vol.166 , pp. 368-379
    • Schagger, H.1    Von Jagow, G.2
  • 23
    • 0025978949 scopus 로고
    • Getting started with yeast
    • Sherman, F. 1991. Getting started with yeast. Methods Enzymol. 194:3-21.
    • (1991) Methods Enzymol. , vol.194 , pp. 3-21
    • Sherman, F.1
  • 24
    • 0029994685 scopus 로고    scopus 로고
    • Evidence for the existence of a pseudoknot structure at the 3′ terminus of the flavivirus genomic RNA
    • Shi, P.-Y., M. Brinton, J. M. Veal, Y. Y. Zhong, and W. D. Wilson. 1996. Evidence for the existence of a pseudoknot structure at the 3′ terminus of the flavivirus genomic RNA. Biochemistry 35:4222-4230.
    • (1996) Biochemistry , vol.35 , pp. 4222-4230
    • Shi, P.-Y.1    Brinton, M.2    Veal, J.M.3    Zhong, Y.Y.4    Wilson, W.D.5
  • 25
    • 9444225980 scopus 로고    scopus 로고
    • Cell proteins bind specifically to West Nile virus minus-strand 3′ stem-loop RNA
    • Shi, P.-Y., W. Li, and M. A. Brinton. 1996. Cell proteins bind specifically to West Nile virus minus-strand 3′ stem-loop RNA. J. Virol. 70:6278-6287.
    • (1996) J. Virol. , vol.70 , pp. 6278-6287
    • Shi, P.-Y.1    Li, W.2    Brinton, M.A.3
  • 26
    • 0000061809 scopus 로고
    • Targeted recombination-based cloning and manipulation of large DNA fragments in yeast
    • Spencer, F., G. Ketner, C. Connelly, and P. Hieter. 1993. Targeted recombination-based cloning and manipulation of large DNA fragments in yeast. Methods Companion Methods Enzymol. 5:161-175.
    • (1993) Methods Companion Methods Enzymol. , vol.5 , pp. 161-175
    • Spencer, F.1    Ketner, G.2    Connelly, C.3    Hieter, P.4
  • 27
    • 0023042840 scopus 로고
    • Location of the binding site for protein S4 on 16 Ribosomal RNA by chemical and enzymatic probing and primer extension
    • Stern, S., R. C. Wilson, and H. F. Noller. 1986. Location of the binding site for protein S4 on 16 Ribosomal RNA by chemical and enzymatic probing and primer extension. J. Mol. Biol. 192:101-110.
    • (1986) J. Mol. Biol. , vol.192 , pp. 101-110
    • Stern, S.1    Wilson, R.C.2    Noller, H.F.3
  • 28
    • 0000103947 scopus 로고
    • Studies of the nature of dengue viruses. III. RNA synthesis in cells infected with type 2 dengue virus
    • Stollar, V., R. W. Schlesinger, and T. M. Steven. 1967. Studies of the nature of dengue viruses. III. RNA synthesis in cells infected with type 2 dengue virus. Virology 33:650-658.
    • (1967) Virology , vol.33 , pp. 650-658
    • Stollar, V.1    Schlesinger, R.W.2    Steven, T.M.3
  • 29
    • 0022468027 scopus 로고
    • Nucleotide sequence at the 3′ end of Japanese encephalitis virus genome RNA
    • Takegami, T., M. Washizu, and K. Yasui. 1986. Nucleotide sequence at the 3′ end of Japanese encephalitis virus genome RNA. Virology 152:483-486.
    • (1986) Virology , vol.152 , pp. 483-486
    • Takegami, T.1    Washizu, M.2    Yasui, K.3
  • 30
    • 0029863798 scopus 로고    scopus 로고
    • Recombinant dengue type 1 virus NS5 protein expressed in Escherichia coli exhibits RNA-dependent RNA polymerase activity
    • Tan, B. H., J. Fu, R. J. Sugrue, E. H. Yap, Y. C. Chan, and Y. H. Tan. 1996. Recombinant dengue type 1 virus NS5 protein expressed in Escherichia coli exhibits RNA-dependent RNA polymerase activity. Virology 216:317-325.
    • (1996) Virology , vol.216 , pp. 317-325
    • Tan, B.H.1    Fu, J.2    Sugrue, R.J.3    Yap, E.H.4    Chan, Y.C.5    Tan, Y.H.6
  • 31
    • 0027457734 scopus 로고
    • Elimination of L-A double-stranded RNA virus of Saccharomyces cerevisiae by expression of gag and gag-pol from an L-A cDNA clone
    • Valle, R. P. C., and R. B. Wickner. 1993. Elimination of L-A double-stranded RNA virus of Saccharomyces cerevisiae by expression of gag and gag-pol from an L-A cDNA clone. J. Virol. 67:2764-2771.
    • (1993) J. Virol. , vol.67 , pp. 2764-2771
    • Valle, R.P.C.1    Wickner, R.B.2
  • 32
    • 0025996720 scopus 로고
    • RNA recognition by Tat derived peptides: Interaction with the major groove?
    • Weeks, K. M., and D. M. Crowthers. 1991. RNA recognition by Tat derived peptides: interaction with the major groove? Cell 66:577-588.
    • (1991) Cell , vol.66 , pp. 577-588
    • Weeks, K.M.1    Crowthers, D.M.2
  • 33
    • 0022530829 scopus 로고
    • Analysis of structure properties which possibly are characteristic for the 3′-terminal sequence of the genome RNA of flaviviruses
    • Wengler, G., and E. Castle. 1986. Analysis of structure properties which possibly are characteristic for the 3′-terminal sequence of the genome RNA of flaviviruses. J. Gen. Virol. 67:1183-1188.
    • (1986) J. Gen. Virol. , vol.67 , pp. 1183-1188
    • Wengler, G.1    Castle, E.2
  • 34
    • 0023657074 scopus 로고
    • Role of a bulged A residue in a specific RNA-protein interaction
    • Wu, H.-N., and O. C. Uhlenbeck. 1987. Role of a bulged A residue in a specific RNA-protein interaction. Biochemistry 26:8221-8227.
    • (1987) Biochemistry , vol.26 , pp. 8221-8227
    • Wu, H.-N.1    Uhlenbeck, O.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.