Phylogenetic relationships of the macaques (Cercopithecidae: Macaca), as revealed by high resolution restriction site mapping of mitochondrial ribosomal genes

Journal of Human Evolution

Volumn 34, Issue 1, 1998, Pages 1-23

  Morales, Juan Carlos ^a   Melnick, Don J ^a  

^a Och Spine at New York Presbyterian Hospitals   (United States)

Author keywords

Macaca; Macaques; Mitochondrial DNA; Phylogeny

Indexed keywords

GENE MAPPING; MACACA ARCTOIDES; MACACA SYLVANUS; MITOCHONDRIAL GENETICS; PHYLOGENY; RESTRICTION MAPPING; RIBOSOMAL DNA;

MACACA; MACAQUE; MITOCHONDRIAL DNA; PHYLOGENY; PRIMATE;

ANIMALS; ANIMALS, WILD; ANIMALS, ZOO; BINDING SITES; DNA, MITOCHONDRIAL; DNA, RIBOSOMAL; HUMANS; MACACA; PHYLOGENY; RESTRICTION MAPPING;

CERCOPITHECIDAE; HOMINIDAE; MACACA; MACACA ARCTOIDES; MACACA SYLVANUS; PRIMATES;

EID: 0031840284     PISSN: 00472484     EISSN: None     Source Type: Journal    
DOI: 10.1006/jhev.1997.0171     Document Type: Article

References (56)

1. Albert, V. A., Mishler, B. D. & Chase, M. W. (1992). Character-state weighting for restriction site data in phylogenetic reconstruction, with an example from chloroplast DNA. In (P. S. Soltis, D. E. Soltis & J. J. Doyle, Eds) Molecular Systematic of Plants, pp. 369-401. London: Chapman and Hall.
2. Albrecht, G. H. (1978). The craniofacial morphology of the Sulawesi macaques. Multivariate approaches to biological problems.Contributions to Primatology, Vol. 13. Basel: S. Karger.
3. Anderson, S., Bankier, A. T., Barrell, B. G., de Bruijn, M. H. L., Coulson, A. R., Drouin, J., Eperon, I. C., Nierlich, D. P., Roe, B. A., Sanger, F., Schreier, P. H., Smith, A. J. H., Staden, R. & Young, I. G. (1981). Sequence organization of the human mitochondrial genome. Nature 290, 457-465.
4. Carpenter, J. M. (1988). Choosing among equally parsimonious cladograms. Cladistics 4, 291-296.
5. Collura, R. V. & Stewart, C.-B. (1995). Insertions and duplications of mtDNA in the nuclear genomes of Old World monkeys and hominoids. Nature 378, 485-489.
6. Corbet, G. B. & Hill, J. E. (1992). The Mammals of the Indomalayan Region. Oxford: Oxford University Press, 488 pp.
7. Cronin, J. E., Cann, R. & Sarich, V. M. (1980). Molecular evolution and systematics of the genus Macaca. In (D. G. Lindburg, Ed.) The Macaques: Studies in Ecology, Behavior, and Evolution, pp. 31-51. New York: Van Nostrand Reinhold Co.
8. Darga, L. L., Goodman, M., Weiss, M. L., Moore, G. W., Prychodko, W., Dene, H., Tashian, R. & Koen, A. (1975). Molecular systematics and clinal variation in macaques. In (C. L. Markert, Ed.) Isozymes IV, Genetics and Evolution, pp. 797-812. New York: Academic Press.
9. DeBry, R. W. & Slade, N. A. (1985). Cladistic analysis of restriction endonuclease cleavage maps within a maximum likelihood framework. Syst. Zool. 34, 21-34.
10. Delson, E. (1980). Fossil macaques, phyletic relationships and a scenario of deployment. In (D. G. Lindburg, Ed.) The Macaques: Studies in Ecology, Behavior, and Evolution, pp. 10-30. New York: Van Nostrand Reinhold Co.
11. Delson, E. (1996). The oldest monkeys in Asia. In International Symposium: Evolution of Asian Primates, p. 40. Freude & Kyoto University Primate Research Institute, Inuyama, Aichi, Japan.
12. Disotell, T. R., Honeycutt, R. L. & Ruvolo, M. (1992). Mitochondrial DNA phylogeny of the Old-World monkey tribe Papionini. Mol. Bio. Evol. 9, 1-13.
13. Eudey, A. A. (1980). Pleistocene glacial phenomena and the evolution of Asian macaques. In (D. G. Lindburg, Ed.) The Macaques: Studies in Ecology, Behavior, and Evolution, pp. 52-83. New York: Van Nostrand Reinhold Co.
14. Fa, J. E. (1989). The genus Macaca: a review of taxonomy and evolution. Mammal Rev. 19, 45-81.
15. Farris, J. S. (1969). A successive approximation approach to character weighing. Syst. Zool. 22, 50-54.
16. Felsenstein, J. (1991). PHYLIP (Phylogeny Inference Package). Version 3.4. Seattle: University of Washington (on disc).
17. Fooden, J. (1969). Taxonomy and evolution of the monkeys of the Celebes (Primates: Cercopithecidae). Bibliotheca Primatologica, No. 10. Basel: S. Karger.
18. Fooden, J. (1976). Provisional classification and key to living species of macaques (Primates: Macaca). Folia Primatol. 25, 225-236.
19. Fooden, J. (1980). Classification and distribution of living macaques. In (D. G. Lindburg, Ed.) The Macaques: Studies in Ecology, Behavior, and Evolution, pp. 1-9. New York: Van Nostrand Reinhold Co.
20. Fooden, J. (1982). Ecogeographic segregation in macaque species. Primates 23, 574-579.
21. Fooden, J. (1988). Taxonomy and evolution of the sinica group of macaques: 6. Interspecific comparisons and synthesis. Fieldiana Zoology, n.s. 45, 1-44.
22. Fooden, J. (1990). The bear macaque, Macaca arctoides: a systematic review. J. hum. Evol. 19, 607-686.
23. Fooden, J. & Lanyon, S. M. (1989). Blood-protein allele frequencies and phylogenetic relationships in Macaca: A review. Am. J. Primatol. 17, 209-241.
24. Frakes, L. A., Francis, J. E. & Syktus, J. I. (1992). Climate modes of the phanerozoic: the history of the earth's climate over the past 600 million years. Cambridge: Cambridge University Press.
25. Froehlich, J. W., Supriatna, J. & Muskita, Y. (1996). Biodiversity and the conservation biology of Macaca nigra: An anthropological view. Tropical Biodiversity 3, 85-102.
26. Groves, C. P. (1980). Speciation in Macaca: the view from Sulawesi. In (D. G. Lindburg, Ed.) The Macaques: Studies in Ecology, Behavior, and Evolution, pp. 84-124. New York: Van Nostrand Reinhold Co.
27. Groves, C. P. (1989). A Theory of Human and Primate Evolution. Oxford: Clarendon Press.
28. Harihara, S., Saitou, N., Horai, M., Gojobori, T., Park, K. S., Misawa, S., Ellepolo, S. B., Ishide, T. & Omototo, K. (1989). Differentiation of mitochondrial DNA types in Macaca fascicularis. Primates 29, 117-127.
29. Hayasaka, K., Fujii, K. & Horai, S. (1996). Molecular phylogeny of macaques: Implications of nucleotide sequences from an 896-base pair region of mitochondrial DNA. Mol. Biol. Evol. 13, 1044-1053.
30. Hayasaka, K., Horai, S., Gojobori, T., Shotake, T., Nozawa, K. & Matsunaga, E. (1988). Phylogenetic relationships among Japanese, rhesus, Taiwanese, and crab-eating monkeys, inferred from restriction-enzyme analysis of mitochondrial DNAs. Mol. Biol. Evol. 5, 270-281.
31. Hayasaka, K., Horai, S., Shotake, T., Nozawa, K. & Matsunaga, E. (1986). Mitochondrial DNA polymorphism in Japanese monkeys, Macaca fuscata. Jpn. J. Genet. 61, 345-359.
32. Hedges, S. B. (1992). The number of replications needed for accurate estimation of the bootstrap P value in phylogenetic studies. Mol. Biol. Evol. 9, 366-369.
33. Hill, W. C. O. (1974). Primates: Comparative Anatomy and Taxonomy, Vol. VII: Cynopithecinae (Cercocebus, Macaca, Cynopithecus). Edinburgh: Edinburgh University Press.
34. Hoelzer, G. A., Ashley, M. A. & Melnick, D. J. (1992). The evolutionary history of the sinica-group of macaque monkeys as revealed by mtDNA restriction site analysis. Mol. Phyl. Evol. 1, 215-222.
35. Hoelzer, G. A., Dittus, W. P. J., Ashley, M. V. & Melnick, D. J. (1994). The local distribution of highly divergent mitochondrial DNA haplotypes in toque macaques (Macaca sinica) at Polonnaruwa, Sri Lanka. Mol. ecol. 3, 451-458.
36. Hoelzer, G. A. & Melnick, D. J. (1996). Evolutionary relationships of the macaques. In (J. E. Fa & D. G. Lindburg, Eds) Evolution and Ecology of Macaque Societies, pp. 3-19. Cambridge: Cambridge University Press.
37. Iawamoto, M. (1975). On a skull of a fossil macaque from the Shikimuzu limestone quarry in the Shikoku district, Japan. Primates 16, 83-94.
38. Iawamoto, M. & Hasegawa, Y. (1972). Two macaque fossil teeth from the Japanese Pleistocene. Primates 13, 77-78.
39. Maniatis, T., Fritsch, E. F. & Sambrook, J. (1982). Molecular Cloning: A Laboratory Manual. Cold Spring Harbor: Cold Spring Harbor Laboratory Press.
40. McElroy, D., Moran, P., Bermingham, E. & Kornfield, I. (1992). REAP: An integrated environment for the manipulation and phylogenetic analysis of restriction data. J. Heredity 83, 157-158.
41. Melnick, D. J. (1990). Molecules, evolution and time. Trends in Ecology and Evolution 5, 772-773.
42. Melnick, D. J. & Hoelzer, G. A. (1993). What is mtDNA good for in the study of Primate evolution? Evol. Anthro. 2, 2-10.
43. Melnick, D. J., Hoelzer, G. A., Absher, R. & Ashley, M. V. (1993). mtDNA diversity in rhesus monkeys reveals overestimates of divergence time and paraphyly with neighboring species. Mol. Biol. Evol. 10, 282-295.
44. Melnick, D. J. & Kidd, K. K. (1985). Genetic and evolutionary relationships among Asian macaques. Int. J. Primatol. 6, 123-160.
45. Mishler, B. D., Albert, V. A., Chase, M. W., Karis, P. O. & Bremer, K. (1996). Character-state weighting for DNA restriction site data: asymmetry, ancestors and the Asteraceae. Cladistics 12, 11-19.
46. Morales, J. C., Patton, J. C. & Bickham, J. W. (1993). Partial endonuclease digestion mapping of PCR-amplified DNA. PCR: Methods and Applications 2, 228-233.
47. Nei, M. & Tajima, F. (1981). DNA polymorphism detectable by restriction endonucleases. Genetics 97, 145-163.
48. Nozawa, K., Shotake, T., Ohkura, Y. & Tanabe, Y. (1977). Genetic variations within and between species of Asian macaques. Jpn. J. Genet. 52, 15-30.
49. Pocock, R. I. (1926). The external characters of the Catarrhine monkeys and apes. Proc. Zool. Soc. London 1925, 1479-1579.
50. Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
51. Swofford, D. L. (1993). PAUP; Phylogenetic Analysis Using Parsimony. Version 3.1.1. Champaign: Illinois Natural History Survey (on disc).
52. Szalay, F. & Delson, E. (1979). Evolutionary History of the Primates. New York: Academic Press.
53. Tanaka, T. & Takenaka, O. (1996). Phylogenetic relationship of the genus Macaca, inferred from DNA sequence. In International Symposium: Evolution of Asian Primates, p. 10. Freude & Kyoto University Primate Research Institute, Inuyama, Aichi, Japan.
54. Vrba, E. S., Denton, G., Partridge, T. C. & Burckle, L. H. (Eds) (1995). Paleoclimate and Evolution, with Emphasis on Human Origins. New Haven: Yale University Press.
55. Zhang, Y. & Shi, L. (1993a). Phylogenetic relationships of macaques as inferred from restriction endonuclease analysis of mitochondrial DNA. Folia Primatol. 60, 7-17.
56. Zhang, Y. & Shi, L. (1993b). Phylogeny of rhesus monkeys (Macaca mulatta) as revealed by mitochondrial DNA restriction enzyme analysis. Int. J. Primatol. 14, 587-605.