A major component approach to presenting consensus sequences

Bioinformatics

Volumn 14, Issue 2, 1998, Pages 151-156

  Smith, David K ^a   Xue, Hong ^a  

^a HONG KONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Hong Kong)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONSENSUS SEQUENCE; HISTOGRAM; INFORMATION PROCESSING; PRIORITY JOURNAL;

EID: 0031829413     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/14.2.151     Document Type: Article

References (17)

1. Bairoch, A. and Apweiler, R. (1997) The SWISS-PROT protein sequence data bank and its supplement TrEMBL. Nucleic Acids Res , 25, 31-36.
2. Bairoch, A., Bucher, B. and Hofmann, K. (1997) The PROSITE database, its status in 1997. Nucleic Acids Res., 25, 217-221.
3. Benson, D.A., Boguski, M.S., Lipman, D.J. and Ostell, J. (1997) Gen-Bank. Nucleic Acids Res., 25, 1-6.
4. Bork, P., Holm, L. and Sander, C. (1994) The immunoglobulin fold. Structural classification, sequence patterns and common core. J. Mol. Biol., 242, 309-320.
5. Brown, J.W. (1997) The ribonuclease P database. Nucleic Acids Res., 25, 263-264.
6. Dopazo, J. (1997) A new index to find regions showing an unexpected variability or conservation in sequence alignments. Comput. Applic. Biosci , 13, 313-317.
7. Harpaz, Y. and Chothia, C. (1994) Many of the immunoglobulin superfamily domains in cell adhesion molecules and surface receptors belong to a new structural set which is close to that containing variable domains. J. Mol. Biol., 238, 528-539.
8. Hawley, D.A. and McClure, W.R. (1983) Compilation and analysis of Escherichia coli promoter DNA sequences. Nucleic Acids Res., 11, 2237-2255.
9. Hunkapiller, T. and Hood, L. (1989) Diversity in the immunoglobulin gene superfamily. Adv. Immunol., 44, 1-63.
10. Kabat, E.A., Wu, T.T., Perry, H.M., Gottesman, K.S. and Foeller, C. (1991) Sequences of Proteins of Immunological Interest, 5th edn. US Department of Health and Human Services, Bethesda, MD.
11. Martin, A.C.R. (1996) Accessing the Kabat antibody sequence database by computer. Proteins Struct. Funct. Genet., 25, 130-133.
12. Parker, M.H. and Hefford, M.A. (1997) A consensus analysis of loop and helix-capping residues in four-α-helical-bundle proteins. Protein Eng., 10, 487-496.
13. Reznikoff, W.S. and McClure, W.R. (1986) E. coli promoters. In Reznikoff, W. and Gold, L. (eds), Maximizing Gene Expression. Butterworths, Boston, pp. 1-33.
14. Schneider, T.D. and Stephens, R.M. (1990) Sequence logos: a new way to display consensus sequences. Nucleic Acids Res., 18, 6097-6100.
15. Shannon, C.E. (1948) The mathematical theory of communication. Bell Syst. Tech. J., 27, 379-423, 623-656.
16. Simpson, R.J., Hammacher, A., Smith, D.K., Matthews, J.M. and Ward, L.D. (1997) Interleukin 6: Structure-function relationships. Protein Sci., 6, 929-955.
17. Taylor, W.R. (1986) Identification of protein sequence homology by consensus template alignment. J. Mol Biol., 188, 233-258.