A consensus residue analysis of loop and helix-capping residues in four-α-helical-bundle proteins

Protein Engineering

Volumn 10, Issue 5, 1997, Pages 487-496

  Parker, Matthew H ^a,b   Hefford, Mary Alice ^b  

^a University of Alabama at Birmingham   (United States)

^b AGRICULTURE AND AGRI FOOD CANADA   (Canada)

Author keywords

Four helix bundle; Helix capping; Loop

Indexed keywords

AMINO ACID; GLYCINE; PROLINE;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CONTROLLED STUDY; CRYSTAL STRUCTURE; DATA BASE; PRIORITY JOURNAL; PROTEIN STABILITY; PROTEIN STRUCTURE; PROTEIN TERTIARY STRUCTURE; X RAY CRYSTALLOGRAPHY;

ANIMALS; CONSENSUS SEQUENCE; CRYSTALLOGRAPHY, X-RAY; DIETARY PROTEINS; DRUG DESIGN; DRUG STABILITY; LEUCINE; LYSINE; METHIONINE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PEPTIDE LIBRARY; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT; THREONINE;

LEPIDOPTERA;

EID: 0031007986     PISSN: 02692139     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (28)

1. Aurora, R., Srinivisan, R. and Rose, G.D. (1994) Science, 264, 1126-1130.
2. Beauregard, M., Dupont, C., Teather, R.M. and Hefford, M.A. (1995) Bio/ Technology, 13, 974-981.
3. Chou, K-C., Maggiora, G.M., Nemethy, G. and Scheraga, H.A. (1988) Proc. Natl Acad. Sci. USA, 85, 4295-4299.
4. Cohen, C. and Parry, D.A.D. (1990) Proteins: Struct. Funct. Genet., 7, 1-15.
5. Crofts, A.R. (1992) pdViewer for Windows. A Program for Viewing Macromolecular Structures from the Brookhaven Protein Data Bank under Windows. Copyright, University of Illinois, Urbana, Champaign.
6. Dasgupta, S. and Bell, J.A. (1993) Int. J. Pept. Protein Res., 41, 499-511.
7. Feng, D.F. and Doolittle, R.F. (1987) J. Mol. Evol., 25, 351-360.
8. Harper, E.T. and Rose, G.D. (1993) Biochemistry, 32, 7605-7609.
9. Harris, N.L., Presnell, S.R. and Cohen, F.E. (1994) J. Mol. Biol., 236, 1356-1368.
10. Hecht, M.H., Richardson, J.S., Richardson, D.C. and Ogden, R.C. (1990) Science, 249, 884-891.
11. Hol, W.G.J., van Duijnen, P.T. and Berendsen, H.J.C. (1978) Nature, 273, 443-446.
12. Ishikawa, K., Nakamura, H., Morikawa, K., Kimura, S. and Kanaya, S. (1993) Biochemistry, 32, 7136-7142.
13. Kabsch, W. and Sander, C. (1983) Biopolymers, 22, 2577-2637.
14. Kamtekar, S., Schiffer, J.M., Xiong, H., Babik, J.M. and Hecht, M.H. (1993) Science, 262, 1680-1685.
15. Lesser, G.J., Lee, R.H., Zehfus, M.H. and Rose, G.D. (1987) In Oxender, D.L. and Fox, C.F. (eds), Protein Engineering. Alan R. Liss, New York pp. 175-179.
16. Milner-White, E.J. (1988) J. Mol. Biol., 199, 503-511.
17. Mott, H.R. and Campbell, I.D. (1995) Curr. Opin. Struct. Biol., 5, 114-121.
18. Munoz, V., Blanco, F.J. and Serrano, L. (1995) Nature Struct. Biol., 2, 380-385.
19. Negri, A., Tedeschi, G., Bonomi, F., Zhang, J.-H. and Kurtz, D.M. (1994) Biochim. Biophys. Acta, 1208, 277-285.
20. Paliakasis, C.D. and Kokkinidis, M. (1992) Protein Engng, 5, 739-748.
21. Pastore, A., De Francesco, R., Morelli, M.A.C., Nalis, D. and Cortese, R. (1992) Protein Engng, 5, 749-757.
22. Regan, L. and DeGrado, W.F. (1988) Science, 241, 976-978.
23. Richardson, J.S. and Richardson, D.C. (1988) Science, 240, 1648-1652.
24. Robinson, H.H. and Crofts, A.R. (1987) The pdViewer Package of Programs for Viewing Macromolecular Structures from the Brookhaven Protein Data Bank on Personal Computers under DOS. University of Illinois, Urbana, Champaign.
25. Sanchez-Ferrer, A., Nunez-Delicado, E. and Bru, R. (1995) Trends Biochem. Sci., 20, 286-288.
26. Seale, J.W., Srinivasan, R. and Rose, G.D. (1994) Protein Sci., 3, 1741-1745.
27. Sneath, P.H.A. and Sokol, R.R. (1973) Numerical Taxonomy. W.H. Freeman and Co., San Francisco, pp. 230-234.
28. Ueda, T., Tamura, T., Maeda, Y., Hashimoyo, Y., Miki, T., Yamada, H. and Imoto, I. (1993) Protein Engng, 6, 183-187.