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Volumn 14, Issue 3, 1998, Pages 232-243

GeneGenerator - A flexible algorithm for gene prediction and its application to maize sequences

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ALGORITHM; CONFERENCE PAPER; DATA BASE; EXON; GENE; GENE SEQUENCE; GENE STRUCTURE; INTRON; MAIZE; NONHUMAN; PREDICTION; PRIORITY JOURNAL; SCORING SYSTEM; STATISTICS; TRAINING;

EID: 0031825707     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/14.3.232     Document Type: Conference Paper
Times cited : (14)

References (15)
  • 1
    • 0030295312 scopus 로고    scopus 로고
    • Arabidopsis intron mutations and pre-mRNA splicing
    • Brown, J.W.S. (1996) Arabidopsis intron mutations and pre-mRNA splicing. Plant J., 110, 771-780.
    • (1996) Plant J. , vol.110 , pp. 771-780
    • Brown, J.W.S.1
  • 2
    • 0030585734 scopus 로고    scopus 로고
    • Evaluation of gene structure prediction programs
    • Burset, M. and Guigó, R. (1996) Evaluation of gene structure prediction programs. Genomics, 34, 353-367.
    • (1996) Genomics , vol.34 , pp. 353-367
    • Burset, M.1    Guigó, R.2
  • 3
    • 0030768930 scopus 로고    scopus 로고
    • Computational methods for the identification of genes in vertebrate genomic sequences
    • Claverie, J.-M. (1997) Computational methods for the identification of genes in vertebrate genomic sequences. Hum. Mol. Genet., 6, 1735-1744.
    • (1997) Hum. Mol. Genet. , vol.6 , pp. 1735-1744
    • Claverie, J.-M.1
  • 4
    • 0030218799 scopus 로고    scopus 로고
    • Finding genes by computer: The state of the art
    • Fickett, J.W. (1996) Finding genes by computer: the state of the art. Trends Genet , 12, 316-320.
    • (1996) Trends Genet , vol.12 , pp. 316-320
    • Fickett, J.W.1
  • 5
    • 0027059264 scopus 로고
    • Assessment of protein coding measures
    • Fickett, J.W. and Tung, C.S. (1992) Assessment of protein coding measures. Nucleic Acids Res., 20, 6441-6450.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 6441-6450
    • Fickett, J.W.1    Tung, C.S.2
  • 6
    • 0027234853 scopus 로고
    • Prediction of the exon-intron structure by a dynamic programming approach
    • Gelfand, M.S. and Roytberg, M.A. (1993) Prediction of the exon-intron structure by a dynamic programming approach. BioSystems, 30, 173-182.
    • (1993) BioSystems , vol.30 , pp. 173-182
    • Gelfand, M.S.1    Roytberg, M.A.2
  • 8
    • 0029791403 scopus 로고    scopus 로고
    • Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information
    • Hebsgaard, S.M., Kerning, P.C., Tolstrup, N., Engelbrecht, J., Rouzé, P. and Brunak, S. (1996) Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information. Nucleic Acids Res., 24, 3439-3452.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 3439-3452
    • Hebsgaard, S.M.1    Kerning, P.C.2    Tolstrup, N.3    Engelbrecht, J.4    Rouzé, P.5    Brunak, S.6
  • 9
    • 0029114904 scopus 로고
    • DNASTAT: A Pascal unit for the statistical analysis of DNA and protein sequences
    • Kleffe, J., Hermann, K., Gunia, W., Vahrson, W. and Wittig, B. (1995) DNASTAT: a Pascal unit for the statistical analysis of DNA and protein sequences. Comput. Applic. Biosci., 11, 449-455.
    • (1995) Comput. Applic. Biosci. , vol.11 , pp. 449-455
    • Kleffe, J.1    Hermann, K.2    Gunia, W.3    Vahrson, W.4    Wittig, B.5
  • 10
    • 0029822410 scopus 로고    scopus 로고
    • Logitlinear models for the prediction of splice sites in plant pre-mRNA sequences
    • Kleffe, J., Hermann, K., Vahrson, W., Wittig, B. and Brendel, V. (1996a) Logitlinear models for the prediction of splice sites in plant pre-mRNA sequences. Nucleic Acids Res , 247, 4709-4718.
    • (1996) Nucleic Acids Res , vol.247 , pp. 4709-4718
    • Kleffe, J.1    Hermann, K.2    Vahrson, W.3    Wittig, B.4    Brendel, V.5
  • 11
    • 0346046349 scopus 로고    scopus 로고
    • Statistical analysis of GeneMark performance by cross validation
    • Kleffe, J., Hermann, K. and Borodovsky, M. (1996b) Statistical analysis of GeneMark performance by cross validation. Comput. Chem., 20, 123-133.
    • (1996) Comput. Chem. , vol.20 , pp. 123-133
    • Kleffe, J.1    Hermann, K.2    Borodovsky, M.3
  • 12
    • 0027912333 scopus 로고
    • Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
    • Lawrence, C.E., Altschul, S.F., Boguski, M.S., Liu, J.S., Neuwald, A.F. and Wootton, J.C. (1993) Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science, 262, 208-214.
    • (1993) Science , vol.262 , pp. 208-214
    • Lawrence, C.E.1    Altschul, S.F.2    Boguski, M.S.3    Liu, J.S.4    Neuwald, A.F.5    Wootton, J.C.6
  • 14
    • 0030255869 scopus 로고    scopus 로고
    • Splicing of precursors to mRNA in higher plants: Mechanisms, regulation and sub-nuclear organisation of the spliceosomal machinery
    • Simpson, G.G. and Filipowicz, W. (1996) Splicing of precursors to mRNA in higher plants: mechanisms, regulation and sub-nuclear organisation of the spliceosomal machinery. Plant Mol. Biol., 32, 1-41.
    • (1996) Plant Mol. Biol. , vol.32 , pp. 1-41
    • Simpson, G.G.1    Filipowicz, W.2
  • 15
    • 0029814920 scopus 로고    scopus 로고
    • A segment-based dynamic programming algorithm for predicting gene structure
    • Wu, T.D. (1996) A segment-based dynamic programming algorithm for predicting gene structure. J. Comput. Biol , 3, 375-394.
    • (1996) J. Comput. Biol , vol.3 , pp. 375-394
    • Wu, T.D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.