Molecular origins of osmotic second virial coefficients of proteins

Biophysical Journal

Volumn 75, Issue 5, 1998, Pages 2469-2477

  Neal, B L ^a,b   Asthagiri, D ^a   Lenhoff, A M ^a  

^a University of Delaware   (United States)

^b ARCO Chemical   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ANISOTROPY; ARTICLE; CRYSTALLIZATION; ELECTRICITY; MATHEMATICAL ANALYSIS; MOLECULAR RECOGNITION; OSMOSIS; PROTEIN INTERACTION; THERMOSTABILITY;

EID: 0031723926     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(98)77691-X     Document Type: Article

References (49)

1. Aliabadi, M. H., and W. S. Hall. 1988. Nonisoparametric formulations for the three dimensional boundary element method. Eng. Anal. 5:198-204.
2. Bassingthwaighte, J. B. 1997. Design and strategy for the Cardionome Project. Adv. Exp. Med. Biol. 430:325-339.
3. Baxter, R. J. 1968. Percus-Yevick equation for hard spheres with surface adhesion. J. Chem. Phys. 49:2770-2774.
4. Bhat, T. N., G. A. Bentley, G. Boulot, M. I. Greene, D. Tello, W. Dall'Acqua, H. Souchon, F. P. Schwarz, R. A. Mariuzza, and R. J. Poljak. 1994. Bound water molecules and conformational stabilization help mediate an antigen-antibody association. Proc. Natl. Acad. Sci. USA. 91:1089-1093.
5. Cabezas, H., Jr., and J. P. O'Connell. 1993. Some uses and misuses of thermodynamic models for dilute liquid solutions. Ind. Eng. Chem. Res. 32:2892-2904.
6. Chan, C. Y., A. N. Beris, and S. G. Advani. 1990. Simulation of 3-D hydrodynamic interactions around ellipsoidal particles using high order boundary element techniques. In Computational Engineering with Boundary Elements, Vol. 1, Fluid and Potential Problems. S. Grilli, C. A. Brebbia, and A. H. D. Cheng, editors. Computational Mechanics Publishers, Boston.
7. Chan, C. Y., A. N. Beris, and S. G. Advani. 1992. Second order boundary element method calculations of hydrodynamic interactions between particles in close proximity. Int. J. Numer. Methods Fluids. 14:1063-1086.
8. Coen, C. J., H. W. Blanch, and J. M. Prausnitz. 1995. Salting out of aqueous proteins: phase equilibria and intermolecular potentials. AIChE J. 41:996-1004.
9. Creighton, T. E. 1993. Proteins: Structures and Molecular Properties. W. H. Freeman and Co., New York.
10. Crosio, M.-P., J. Janin, and M. Jullien. 1992. Crystal packing in six crystal forms of pancreatic ribonuclease. J. Mol. Biol. 228:243-251.
11. Davies, D. R., and G. H. Cohen. 1996. Interactions of protein antigens with antibodies. Proc. Natl. Acad. Sci. USA. 93:7-12.
12. De Boor, C. 1978. A Practical Guide to Splines. Springer-Verlag, New York.
13. Gallagher, W. H., and C. K. Woodward. 1989. The concentration dependence of the diffusion coefficient for bovine pancreatic trypsin inhibitor: a dynamic light scattering study of a small protein. Biopolymers. 28: 2001-2024.
14. Garde, S., G. Hummer, M. E. Paulaitis, and A. E. García. 1997. Hydration of biological macromolecules: from small solutes to proteins and nucleic acids. In Proceedings of the 1996 MRS Fall Meeting Symposium on Statistical Mechanics in Physics and Biology. D. Wirtz and T. C. Halsey, editors. Materials Research Society, Pittsburgh.
15. George, A., Y. Chiang, B. Guo, A. Arabshahi, Z. Cai, and W. W. Wilson. 1997. Second virial coefficient as predictor in protein crystal growth. Methods Enzymol. 276:100-110.
16. George, A., and W. W. Wilson. 1994. Predicting protein crystallization from a dilute solution property. Acta Crystallogr. D. 50:361-365.
17. Haynes, C. A., F. J. Benitez, H. W. Blanch, and J. M. Prausnitz. 1993. Application of integral-equation theory to the description of aqueous two-phase partitioning systems. AIChE J. 39:215-223.
18. Haynes, C. A., K. Tamura, H. R. Korfer, H. W. Blanch, and J. M. Prausnitz. 1992. Thermodynamic properties of aqueous a-chymotrypsin solutions from membrane osmometry. J. Phys. Chem. 96:905-912.
19. Hill, T. L. 1987. Statistical Mechanics. Principles and Selected Applications. Dover, Mineola, NY.
20. Horton, N., and M. Lewis. 1992. Calculation of the free energy of association for protein complexes. Protein Sci. 1:169-181.
21. Hunter, R. J. 1987. Foundations of Colloid Science. Oxford University Press, Oxford.
22. Imoto, T. 1983. Electrostatic free energy of lysozyme. Biophys. J. 44: 293-298.
23. Janin, J., and F. Rodier. 1995. Protein-protein interactions at crystal contacts. Proteins Struct. Funct. Genet. 23:580-587.
24. Jones, S., and J. M. Thornton. 1996. Principles of protein-protein interactions. Proc. Natl. Acad. Sci. USA. 93:13-20.
25. Jorgensen, W. L., and J. Tirado-Rives. 1988. The OPLS potential functions for proteins. Energy minimizations for crystals of cyclic peptides and crambin. J. Am. Chem. Soc. 110:1657-1666.
26. Kirkwood, J. G. 1934. Theory of solutions of molecules of containing widely separated charges with special application to zwitterions. J. Chem. Phys. 2:351-361.
27. Kuehner, D. E., C. Heyer, C. Rämsch, U. M. Fornefeld, H. W. Blanch, and J. M. Prausnitz. 1997. Interactions of lysozyme in concentrated electrolyte solutions from dynamic light-scattering measurements. Biophys. J. 73:3211-3224.
28. Marini, M. A., and C. J. Martin. 1971. The prototropic behavior of alpha-chymotrypsin and chymotrypsinogen in water and formaldehyde. An examination of the reactivity of the amino groups in formaldehyde. Eur. J. Biochem. 19:162-168.
29. McMillan, W. G., and J. E. Mayer. 1945. The statistical thermodynamics of multicomponent systems. J. Chem. Phys. 13:276-305.
30. McQuarrie, D. A. 1976. Statistical Mechanics. Harper Collins, New York.
31. Muschol, M., and F. Rosenberger. 1995. Interactions in undersaturated and supersaturated lysozyme solutions: static and dynamic light scattering results. J. Chem. Phys. 103:10424-10432.
32. Neal, B. L. 1997. Molecular thermodynamic properties of aqueous protein solutions. Ph.D. thesis. University of Delaware, Newark, DE.
33. Neal, B. L., and A. M. Lenhoff. 1995. Excluded volume contribution to the osmotic second virial coefficient for proteins. AIChE J. 41:1010-1014.
34. Novotny, J., R. E. Bruccoleri, and F. A. Saul. 1989. On the attribution of binding energy in antigen-antibody complexes McPC 603, D 1.3, and HyHEL-5. Biochemistry. 28:4735-4749.
35. Rosenbaum, D., P. C. Zamora, and C. F. Zukoski. 1996. Phase behavior of small attractive colloidal particles. Phys. Rev. Lett. 76:150-153.
36. Rosenbaum, D. F., and C. F. Zukoski. 1996. Protein interactions and crystallization. J. Cryst. Growth. 169:752-758.
37. Roth, C. M., B. L. Neal, and A. M. Lenhoff. 1996. Van der Waals interactions involving proteins. Biophys. J. 70:977-987.
38. Sharp, K. A., and B. Honig. 1990. Electrostatic interactions in macromolecules: theory and applications. Annu. Rev. Biophys. Biophys. Chem. 19:301-332.
39. Stryer, L. 1988. Biochemistry. W. H. Freeman and Co., New York.
40. Vilker, V. L., C. K. Colton, and K. A. Smith. 1981. The osmotic pressure of concentrated protein solutions: effect of concentration and pH in saline solutions of bovine serum albumin. J. Colloid Interface Sci. 79:548-566.
41. Wang, D., W. Bode, and R. Huber. 1985. Bovine chymotrypsinogen A x-ray crystal structure analysis and refinement of a new crystal form at 1.8 Å resolution. J. Mol. Biol. 185:595-624.
42. Warwicker, J., and H. C. Watson. 1982. Calculation of the electric potential in the active site cleft due to α-helix dipoles. J. Mol. Biol. 157:671-679.
43. Watanabe, E., S. Tsoka, and J. A. Asenjo. 1994. Selection of chromatographic protein purification operations based on physicochemical properties. Ann. N.Y. Acad. Sci. 721:348-365.
44. Wilkins, M. R., K. L. Williams, R. D. Appel, and D. F. Hochstrasser. 1997. Proteome Research: New Frontiers in Functional Genomics. Springer-Verlag, Berlin.
45. Yoon, B. J., and A. M. Lenhoff. 1990. A boundary element method for molecular electrostatics with electrolyte effects. J. Comp. Chem. 11: 1080-1086.
46. Zauhar, R. J. 1995. SMART: a solvent-accessible triangulated surface generator for molecular graphics and boundary element applications. J. Computer-Aided Mol. Design. 9:149-159.
47. Zhou, H.-X. 1993. Boundary element solution of macromolecular electrostatics: interaction energy between two proteins. Biophys. J. 65: 955-963.
48. Zimm, B. H. 1946. Applications of the methods of molecular distribution to solutions of large molecules. J. Chem. Phys. 14:164-179.
49. Zubay, G. 1984. Biochemistry. Addison-Wesley, New York.