Cloning and sequence analysis of the structural gene for the bc1-Type Rieske iron-sulfur protein from Thermus thermophilus HB8

Journal of Bioenergetics and Biomembranes

Volumn 30, Issue 3, 1998, Pages 223-233

  Gatti, Domenico L ^a,b   Tarr, George ^b   Fee, James A ^b,c   Ackerman, Sharon H ^a  

^a WAYNE STATE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Phylogeny of Rieske proteins; Rieske iron sulfur protein; Thermus thermophilus

Indexed keywords

IRON SULFUR PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; SPECIES DIFFERENCE; STRUCTURAL GENE; THERMUS THERMOPHILUS;

BACTERIA (MICROORGANISMS); BOVINAE; CYANOBACTERIA; PROKARYOTA; THERMUS; THERMUS THERMOPHILUS;

EID: 0031720883     PISSN: 0145479X     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1020540702567     Document Type: Article

References (52)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990). J. Mol. Biol. 215, 403-410.
2. Berry, E. A., Huang, L. S., Zhang, Z., Chi, Y. I., Hung, L. W., and Kim, S. H. (1997). Abstract 2468 of the 17th International Congress of Biochemistry and Molecular Biology, FASEB J. 11, A1279.
3. Britt, R. D., Sauer, K., Klein, M. P., Knaff, D. B., Kriauciunas, A., Yu, C. -A., Yu, L., and Malkin, R. (1991). Biochemistry 30, 1892-1901.
4. Cline, J. F., Hoffman, B. M., Mims, W. B., LaHaie, E., Ballou, D. P., and Fee, J. A. (1985). J. Biol. Chem. 260, 3251-3254.
5. Cramer, W. A., Martinez, S. E., Huang, D., Furbacher, P. N., and Smith, J. L. (1994). Curr. Opin. Struct. Biol. 4, 536-544.
6. Davidson, E., Ohnishi, T., Atta-Asafo-Adjei, E., and Daldal, F. (1992). Biochemistry 31, 3342-3351.
7. Devereux, J., Haeberli, P., and Smithies, O. (1984). Nucleic Acids Res. 12, 387-395.
8. Doolittle, R. F. (1986). Of URFS and ORFS: A Primer on How to Analyze Derived Amino Acid Sequences, University Science Books, Mill Valley, California.
9. Feng, D. F., and Doolittle, R. F. (1990). Methods Enzymol. 183, 375-387.
10. Fee, J. A., Findling, K. L., Yoshida, T., Hille, R., Tarr, G. E., Hearshen, D. O., Dunham, W. R., Day, E. P., Kent, T. A., and Munck, E. (1984). J. Biol. Chem. 259, 124-133.
11. Findling, K. L., Yoshida, T., and Fee, J. A. (1984). J. Biol. Chem. 259, 123.
12. Gabellini, N., and Sebald, W. (1986). Eur. J. Biochem. 154, 569-579.
13. Gatti, D. L., Meinhardt, S. W., Ohnishi, T., and Tzagaloff, A. (1989). J. Mol. Biol. 205, 421-435.
14. Gennis, R. B., Barquera, B., Hacker, B., Van Doren, S., Arnaud, S., Crofts, A., Davidson, E., Gray, K. A., and Daldal, F. (1993). J. Bioenerg. Biomembr. 25, 195-209.
15. Graham, L. A., Brandt, U., Sargent, J. S., and Trumpower, B. L. (1992). J. Bioenerg. Biomembr. 25, 245-257.
16. Gribskov, M., Devereux, J., and Burgess, R. T. (1984). Nucleic Acids Res. 12, 539-549.
17. Grunstein, M., and Hogness, D. S. (1975). Proc. Natl. Acad. Sci. USA 72, 101-106.
18. Gurbiel, R. J., Doan, P. E., Gassner, G. T., Macke, T. J., Case, D. A., Ohnishi, T., Fee, J. A., Ballou, D. P., and Hoffman, B. M. (1996). Biochemistry 35, 7834-7845.
19. Hauska, G., Nitschke, W., and Herrmann, R. G. (1988). J. Bioenerg. Biomembr. 20, 211-228.
20. Hennig, M., Darimont, B., Sterner, R., Kirschner, K., and Jansonius, J. N. (1995). Structure 3, 163-167.
21. Hill, J. E., Myers, A. M., Köerner, T. J., and Tzagoloff, A. (1986). Yeast 2, 163-167.
22. Iwata, S., Saynovits, M., Link, T. A., and Michel, H. (1996). Structure 4, 567-579.
23. Karlin, S., and Altschul, S. F. (1993). Proc. Natl. Acad. Sci. USA 90, 5873-5877.
24. Keightley, J. A., Zimmermann, B. H., Mather, M. W., Springer, P., Pastuszyn, A., Lawrence, D. M., and Fee, J. A. (1995). J. Biol. Chem. 270, 20345-20358.
25. Krinner, M., Hauska, G., Hurt, E., and Lockau, W. (1982). Biochim. Biophys. Acta 681, 110-117.
26. Kuila, D., and Fee, J. A. (1986). J. Biol. Chem. 261, 2768-2771.
27. Kurowski, B., and Ludwig, B. (1987). J. Biol. Chem. 262, 13805-13811.
28. Liebl, U., Sled, V., Ohnishi, T., and Daldal, F. (1995). in Photosynthesis: From Light to Biosphere (Mathis, P., ed.), Kluwer Academic Publishers, Dordrecht, pp. 749-752.
29. Link, T. A., and Iwata, S. (1996). Biochim. Biophys. Acta 1275, 54-60.
30. Link, T. A., Saynovits, M., Assmann, C., Iwata, S., Ohnishi, T., and von Jagow, G. (1996). Eur. J. Biochem. 237, 71-75.
31. Macedo-Ribeiro, S., Darimont, B., Sterner, R., and Huber, R. (1996). Structure 4, 1291-1301.
32. Maniatis, T., Fritsch, E. F., and Sambrook, J. (1982). Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Springs Harbor.
33. Maseda, H., and Hoshino, T. (1995) FEMS Microbiol. 128, 127-134
34. Mather, M. W., and Fee, J. A. (1990). Plasmid 24, 45-56.
35. Mather, M. W., Springer, P., and Fee, J. A. (1991). J. Biol. Chem. 266, 5025-5035.
36. Mather, M. W., Keightley, J. A., and Fee, J. A. (1993). Methods Enzymol. 218, 695-704.
37. Mather, M. W., Springer, P., Mensel, S., Buse, G., and Fee, J. A. (1993). J. Biol. Chem. 268, 5395-5408.
38. Maxam, A. M., and Gilbert, W. (1977). Proc. Natl. Acad. Sci. USA 74, 560-564.
39. Musafia, B., Buchner, V., and Arad, D. (1995). J. Mol. Biol. 254, 761-770.
40. Rieske, J. S., Hansen, R. E., and Zaugg, W. S. (1964). J. Biol. Chem. 239, 3017-3022.
41. Sanger, F., Nicklen, S., and Coulson, A. R. (1977). Proc. Natl. Acad. Sci. USA 74, 5463-5467.
42. Schmidt, C. L., Anemüller, S., and Schäffer, G. (1996). FEBS Lett. 888, 43-46.
43. Sone, N., Tsuchiya, N., Inoue, M., and Noguchi, S. (1996). J. Biol. Chem. 271, 12457-12462.
44. Tarr, G. (1982). In Methods in Protein Sequence Analysis (Elzinga, M., ed.), Humana Press Inc., Clifton, pp. 223-232.
45. Trumpower, B. L. (1981). Biochim. Biophys. Acta 639, 129-155.
46. Trumpower, B. L., Edwards, C. A., and Ohnishi, T. (1980). J. Biol. Chem. 255, 7487-7493.
47. Xia, D., Yu, C.-A., Kim, H., Xia, J.-Z., Kachurin, A. M., Zhang, L., Yu, L., and Deisenhoffer, J. (1997). Science 277, 60-66.
48. Yang, X., and Trumpower, B. L. (1986). J. Biol. Chem. 261, 12281-12289.
49. Yip, K. S. P., Stillman, T. J., Britton, K. L., Artymiuk, P. J., Baker, P. J., Sedelnikova, S. E., Engel, P. C., Pasquo, A., Chiaraluce, R., Consalvi, V., and Rice, D. W. (1995). Structure 3, 1147-1158.
50. Yoshida, T., Lorence, R. M., Choc, M. G., Tarr, G. E., Findling, K. L., and Fee, J. A. (1984). J. Biol. Chem. 259, 112-123.
51. Zhang, H., Carrell, C. J., Huang, D. Sied, V., Ohnishi, T., Smith, J. L., and Cramer, W. A. (1996). J. Biol. Chem. 271, 31360-31366.
52. Zimmermann, B. H. (1988). Ph.D. Thesis, The University of Michigan.