Optimizing potentials for the inverse protein folding problem

Protein Engineering

Volumn 11, Issue 9, 1998, Pages 749-752

  Chiu, Ting Lan ^a   Goldstein, Richard A ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

Author keywords

Contact potential; Lattice proteins; Protein folding; Sequence recognition; Structure recognition

Indexed keywords

PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; PREDICTION; PRIORITY JOURNAL; PROTEIN FOLDING;

EID: 0031709922     PISSN: 02692139     EISSN: None     Source Type: Journal    
DOI: 10.1093/protein/11.9.749     Document Type: Article

References (23)

1. Anfinsen, C. (1973) Science, 181, 223-230.
2. Bowie, J.U., Luthy, R. and Eisenberg, D. (1991) Science, 253, 164-170.
3. Chiu, T.L. and Goldstein, R.A. (1998) Folding Design, 3, 223-228.
4. Crippen, G.M. (1991) Biochemistry, 30, 4232-4237.
5. Crippen, G.M. (1996) Proteins, 26, 167-171.
6. Crippen, G.M. and Maiorov, V.N. (1995) In Bohr, H. and Branak, S. (eds) Protein Folds. A Distance-based Approach. CRC Press, New York, pp. 189-201.
7. Doolittle, R.F. (1981) Science, 214, 149-159.
8. Gill, P.E. and Murray, W. (eds) (1974) Numerical Methods for Constrained Optimization. Academic Press, London.
9. Godzik, A. (1995) Protein Engng, 8, 409-416.
10. Goldstein, R.A., Luthey-Schulten, Z.A. and Wolynes, P.G. (1992a) Proc. Natl Acad. Sci. USA, 89, 4918-4922.
11. Goldstein, R.A., Luthey-Schulten, Z.A. and Wolynes, P.G. (1992b) Proc. Natl Acad. Sci. USA, 89, 9029-9033.
12. Govandarajan, S. and Goldstein, R.A. (1998) Proc. Natl Acad. Sci. USA, 95, 5545-5549.
13. Hao, M.H. and Scheraga, H.A. (1996) Proc. Natl Acad. Sci. USA, 93, 4984-4989.
14. Koretke, K.K., Luthey-Schulten, Z. and Wolynes, P.G. (1996) Protein Sci., 5, 1043-1059.
15. Maiorov, V.N. and Crippen, G.M. (1992) J. Mol. Biol., 227, 876-888.
16. Miray, L.A. and Shakhnovich, E.I. (1996) J. Mol. Biol., 264, 1164-1179.
17. Miyazawa, S. and Jernigan, R.L. (1985) Macromol., 18, 534-552.
18. Shakhnovich, E.I., Farztdinov, G., Gutin, A.M. and Karplus, M. (1991) Phys. Rev. Lett., 67, 1665-1668.
19. Sippl, M.J. (1993) J. Comp.-Aided Mol. Design, 7, 473-501.
20. Thomas, P.D. and Dill, K.A. (1996) J. Mol. Biol., 257, 457-469.
21. Šali, A., Shakhnovich, E.I. and Karplus, M.J. (1994a) J. Mol. Biol., 235, 1614-1636.
22. Šali, A., Shakhnovich, E.I. and Karplus, M.J. (1994b) Nature, 369, 248-251.
23. Yue, K. and Dill, K.A. (1992) Proc. Natl Acad. Sci. USA, 89, 4163-4167.