Probing lymphocyte biology by genomic-scale gene expression analysis

Journal of Clinical Immunology

Volumn 18, Issue 6, 1998, Pages 373-379

  Alizadeh, Ash ^a   Eisen, Michael ^b   Botstein, David ^b   Brown, Patrick O ^b,c   Staudt, Louis M ^a,c  

^a NATIONAL CANCER INSTITUTE   (United States)

^b STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

Cytokines; Gene expression; Genome; Lymphocyte activation; Microarray

Indexed keywords

COMPLEMENTARY DNA; CYTOKINE; MESSENGER RNA; TRANSCRIPTION FACTOR;

ARTICLE; GENE ACTIVATION; GENE EXPRESSION; GENE INDUCTION; GENE TECHNOLOGY; GENETIC TRANSCRIPTION; GENOME; HUMAN; IMMUNOPATHOLOGY; LYMPHATIC SYSTEM TUMOR; LYMPHOCYTE ACTIVATION; LYMPHOCYTE DIFFERENTIATION; NONHUMAN; PRIORITY JOURNAL;

EID: 0031700765     PISSN: 02719142     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1023293621057     Document Type: Article

References (31)

1. Schena M, Shalon D, Davis RW, Brown PO: Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270:467-470, 1995
2. Shalon D, Smith SJ, Brown PO: A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Res 6:639-645, 1996
3. DeRisi J, Penland L, Brown PO, Bittner ML, Meltzer PS, Ray M, Chen Y, Su YA, Trent JM: Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nat Genet 14:457-160, 1996
4. Schena M, Shalon D, Heller R, Chai A, Brown PO, Davis RW: Parallel human genome analysis: Microarray-based expression monitoring of 1000 genes. Proc Natl Acad Sci USA 93:10614-10619, 1996
5. Lockhart DJ, Dong H, Byrne MC, Follettie MT, Gallo MV, Chee MS, Mittmann M, Wang C, Kobayashi M, Horton H, Brown EL: Expression monitoring by hybridization to high-density oligonucleotide arrays [In Process Citation]. Nat Biotechnol 14:1675-1680, 1996
6. Pietu G, Alibert O, Guichard V, Lamy B, Bois F, Leroy E, Mariage-Sampson R, Houlgatte R, Soularue P, Auffray C: Novel gene transcripts preferentially expressed in human muscles revealed by quantitative hybridization of a high density cDNA array. Genome Res 6:492-503, 1996
7. DeRisi JL, Iyer VR, Brown PO: Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278:680-686, 1997
8. Lashkari DA, DeRisi JL, McCusker JH, Namath AF, Gentile C, Hwang SY, Brown PO, Davis RW: Yeast microarrays for genome wide parallel genetic and gene expression analysis. Proc Natl Acad Sci USA 94:13057-13062, 1997
9. Heller RA, Schena M, Chai A, Shalon D, Bedilion T, Gilmore J, Woolley DE, Davis RW: Discovery and analysis of inflammatory disease-related genes using cDNA microarrays. Proc Natl Acad Sci USA 94:2150-2155, 1997
10. Wodicka L, Dong H, Mittmann M, Ho MH, Lockhart DJ: Genome-wide expression monitoring in Saccharomyces cerevisiae. Nat Biotechnol 15:1359-1367, 1997
11. Fodor SP, Read JL, Pirrung MC, Stryer L, Lu AT, Solas D: Light-directed, spatially addressable parallel chemical synthesis. Science 251:767-773, 1991
12. Southern EM, Maskos U, Elder JK: Analyzing and comparing nucleic acid sequences by hybridization to arrays of oligonucleotides: Evaluation using experimental models. Genomics 13:1008-1017, 1992
13. Fodor SP, Rava RP, Huang XC, Pease AC, Holmes CP, Adams CL: Multiplexed biochemical assays with biological chips. Nature 364:555-556, 1993
14. Maskos U, Southern EM: A study of oligonucleotide reassociation using large arrays of oligonucleotides synthesised on a glass support. Nucleic Acids Res 21:4663-4669, 1993
15. Southern EM, Case-Green SC, Elder JK, Johnson M, Mir KU, Wang L, Williams JC: Arrays of complementary oligonucleotides for analysing the hybridisation behaviour of nucleic acids. Nucleic Acids Res 22:1368-1373, 1994
16. Lipshutz RJ, Morris D, Chee M, Hubbell E, Kozal MJ, Shah N, Shen N, Yang R, Fodor SP: Using oligonucleotide probe arrays to access genetic diversity. Biotechniques 19:442-447, 1995
17. Southern EM: Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98:503-517, 1975
18. Adams MD, Dubnick M, Kerlavage AR, Moreno R, Kelley JM, Utterback TR, Nagle JW, Fields C, Venter JC: Sequence identification of 2.375 human brain genes. Nature 355:632-634, 1992
19. Schuler GD: Pieces of the puzzle: Expressed sequence tags and the catalog of human genes. J Mol Med 75:694-698, 1997
20. Lennon G, Auffray C, Polymeropoulos M, Soares MB: The I.M.A.G.E. Consortium: An integrated molecular analysis of genomes and their expression. Genomics 33:151-152, 1996
21. Strausberg RL, Dahl CA, Klausner RD: New opportunities for uncovering the molecular basis of cancer. Nat Genet 15 Spec No: 415-416, 1997
22. Kelly K, Siebenlist U: Immediate-early genes induced by antigen receptor stimulation. Curr Opin Immunol 7:327-332, 1995
23. Ullman KS, Northrop JP, Verweij CL, Crabtree GR: Transmission of signals from the T lymphocyte antigen receptor to the genes responsible for cell proliferation and immune function: The missing link. Annu Rev Immunol 8:421-452, 1990
24. Chen WJ, Lewis KS, Chandra G, Cogswell JP, Stinnett SW, Kadwell SH, Gray JG: Characterization of human E4BP4, a phosphorylated bZIP factor. Biochim Biophys Acta 1264:388-396, 1995
25. Zhang W, Zhang J, Kornuc M, Kwan K, Frank R, Nimer SD: Molecular cloning and characterization of NF-IL3A, a transcriptional activator of the human interleukin-3 promoter. Mol Cell Biol 15:6055-6063, 1995
26. Ikushima S, Inukai T, Inaba T, Nimer SD, Cleveland JL, Look AT: Pivotal role for the NFIL3/E4BP4 transcription factor in interleukin 3-mediated survival of pro-B lymphocytes. Proc Natl Acad Sci USA 94:2609-2614, 1997
27. Illera VA, Perandones CE, Stunz LL, Mower DA, Jr., Ashman RF: Apoptosis in splenic B lymphocytes. Regulation by protein kinase C and IL-4. J Immunol 151:2965-2973, 1993
28. Panayiotidis P, Ganeshaguru K, Jabbar SA, Hoflbrand AV: Interleukin-4 inhibits apoptotic cell death and loss of the bcl-2 protein in B-chronic lymphocytic leukaemia cells in vitro. Br J Haematol 85:439-445, 1993
29. Screaton GR, Mongkolsapaya J, Xu XN, Cowper AE, McMichael AJ, Bell JI: TRICK2, a new alternatively spliced receptor that transduces the cytotoxic signal from TRAIL. Curr Biol 7:693-696, 1997
30. Staudt LM, Dent AL, Shaffer AL, Yu X: Regulation of lymphocyte cell fate decisions and lymphomagenesis by BCL-6. Int J Immunol (in press), 1998
31. Brown PO, Hartwell L: Genomics and human disease - Variations on variation. Nat Genet 18:91-93, 1998