-
1
-
-
0001961791
-
Cutinases from fungi and pollen
-
Borgström, B. and Brockman, H.L. (eds.). Amsterdam: Elsevier
-
Kolattukudy, P.E. Cutinases from fungi and pollen. In: "Lipases," Borgström, B. and Brockman, H.L. (eds.). Amsterdam: Elsevier, 1984:471-504.
-
Lipases
, vol.1984
, pp. 471-504
-
-
Kolattukudy, P.E.1
-
2
-
-
0026583770
-
Fusarium solani cutinase is a lipolytic enzyme with a catalytic serine accessible to solvent
-
Martinez, C., De Geus, P., Lauwereys, M., Matthyssens, G., Cambillau, C. Fusarium solani cutinase is a lipolytic enzyme with a catalytic serine accessible to solvent. Nature 356:615-618, 1992.
-
(1992)
Nature
, vol.356
, pp. 615-618
-
-
Martinez, C.1
De Geus, P.2
Lauwereys, M.3
Matthyssens, G.4
Cambillau, C.5
-
3
-
-
0027481669
-
Molecular dynamics studies of proteins
-
Van Gunsteren, W.F. Molecular dynamics studies of proteins. Curr. Opin. Struct. Biol. 3:277-281, 1993.
-
(1993)
Curr. Opin. Struct. Biol.
, vol.3
, pp. 277-281
-
-
Van Gunsteren, W.F.1
-
4
-
-
0003561278
-
-
BIOMOS, Biomolecular Software, The Netherlands; Laboratory of Physical Chemistry, University of Groningen
-
Van Gunsteren, W.F., Berendsen, H.J.C. Groningen molecular simulation (GROMOS) library manual. BIOMOS, Biomolecular Software, The Netherlands; Laboratory of Physical Chemistry, University of Groningen, 1987.
-
(1987)
Groningen Molecular Simulation (GROMOS) Library Manual
-
-
Van Gunsteren, W.F.1
Berendsen, H.J.C.2
-
5
-
-
0025398721
-
WHAT IF: A molecular modelling and drug design program
-
Vriend, G. WHAT IF: A molecular modelling and drug design program. J. Mol. Graph. 8:52-57, 1990.
-
(1990)
J. Mol. Graph.
, vol.8
, pp. 52-57
-
-
Vriend, G.1
-
6
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W., Sander, C. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22:2577-2637, 1993.
-
(1993)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
7
-
-
0003742069
-
-
London; Department of Biochemistry and Molecular Biology, University College
-
Hubbard, S.J., Thornton, J.M. "NACCESS," Computer Program, London; Department of Biochemistry and Molecular Biology, University College, 1993.
-
(1993)
"NACCESS," Computer Program
-
-
Hubbard, S.J.1
Thornton, J.M.2
-
8
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein, F.C., Koetzle, T.F., Williams, G.J.B., et al. The Protein Data Bank: A computer-based archival file for macromolecular structures. J. Mol. Biol. 112:535-542, 1977.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
-
9
-
-
1242346370
-
The missing term in effective pair potentials
-
Berendsen, H.J.C., Grigera, J.R., Straatsma, T.P. The missing term in effective pair potentials. J. Phys. Chem. 91:6269-6271, 1987.
-
(1987)
J. Phys. Chem.
, vol.91
, pp. 6269-6271
-
-
Berendsen, H.J.C.1
Grigera, J.R.2
Straatsma, T.P.3
-
10
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen, H.J.C., Postma, J.P.M., Van Gunsteren, W.F., DiNola, A., Haak, J.R. Molecular dynamics with coupling to an external bath. J. Chem. Phys. 81:3684-3690, 1984.
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
DiNola, A.4
Haak, J.R.5
-
11
-
-
33646940952
-
Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert, J.P., Ciccotti, G., Berendsen, H.J.C. Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes. J. Comput. Phys. 23:327-341, 1977.
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
12
-
-
2142813682
-
Computer simulation of molecular dynamics: Methodology, applications and perspectives
-
Van Gunsteren, W.F., Berendsen, H.J.C. Computer simulation of molecular dynamics: Methodology, applications and perspectives. Angew. Chem. Int. Ed. Engl. 29:992-1023, 1990.
-
(1990)
Angew. Chem. Int. Ed. Engl.
, vol.29
, pp. 992-1023
-
-
Van Gunsteren, W.F.1
Berendsen, H.J.C.2
-
13
-
-
0011746241
-
A molecular dynamics study of the decane/water interface
-
Van Buuren, A.R., Marrink, S.J., Berendsen, H.J.C. A molecular dynamics study of the decane/water interface. J. Phvs. Chem. 97:9206-9212, 1993.
-
(1993)
J. Phvs. Chem.
, vol.97
, pp. 9206-9212
-
-
Van Buuren, A.R.1
Marrink, S.J.2
Berendsen, H.J.C.3
-
14
-
-
0008025298
-
Convergence properties of free energy calculations: α-cyclodextrin complexes as a case study
-
Mark, A.E., Van Helden, S.P., Smith, P.E., Janssen, L.H.M., Van Gunsteren, W.F. Convergence properties of free energy calculations: α-cyclodextrin complexes as a case study. J. Am. Chem. Soc. 116:6293-6302, 1994.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 6293-6302
-
-
Mark, A.E.1
Van Helden, S.P.2
Smith, P.E.3
Janssen, L.H.M.4
Van Gunsteren, W.F.5
-
15
-
-
0029162947
-
Comparison of MD simulations and NMR experiments for hen lysozyme: Analysis of local fluctuations, cooperative motions and global changes
-
Smith, L.J., Mark, A.E., Dobson, C.M., Van Gunsteren, W.F. Comparison of MD simulations and NMR experiments for hen lysozyme: Analysis of local fluctuations, cooperative motions and global changes. Biochemistry 34:10918-10931, 1995.
-
(1995)
Biochemistry
, vol.34
, pp. 10918-10931
-
-
Smith, L.J.1
Mark, A.E.2
Dobson, C.M.3
Van Gunsteren, W.F.4
-
16
-
-
0029906944
-
A method for detecting hydrophobic patches on protein surfaces
-
Lijnzaad, P., Berendsen, H.J.C., Argos, P. A method for detecting hydrophobic patches on protein surfaces. Proteins 26:192-203, 1996.
-
(1996)
Proteins
, vol.26
, pp. 192-203
-
-
Lijnzaad, P.1
Berendsen, H.J.C.2
Argos, P.3
-
17
-
-
0030055023
-
Hydrophobic patches on the surfaces of protein structures
-
Lijnzaad, P., Berendsen, H.J.C., Argos, P. Hydrophobic patches on the surfaces of protein structures. Proteins 25:389-397, 1996.
-
(1996)
Proteins
, vol.25
, pp. 389-397
-
-
Lijnzaad, P.1
Berendsen, H.J.C.2
Argos, P.3
-
18
-
-
0027441950
-
Essential dynamics on proteins
-
Amadei, A., Linssen, A.B.M., Berendsen, H.J.C. Essential dynamics on proteins. Proteins 17:412-425, 1993.
-
(1993)
Proteins
, vol.17
, pp. 412-425
-
-
Amadei, A.1
Linssen, A.B.M.2
Berendsen, H.J.C.3
-
19
-
-
0029075795
-
The essential dynamics of Thermolysin: Confirmation of the hinge-bending motion and comparison of simulations in vacuum and water
-
Van Aalten, D.M.F., Amadei, A., Linssen, A.B.M., Eijsink, V.G.H., Vriend, G., Berendsen, H.J.C. The essential dynamics of Thermolysin: Confirmation of the hinge-bending motion and comparison of simulations in vacuum and water. Proteins 22:45-54, 1995.
-
(1995)
Proteins
, vol.22
, pp. 45-54
-
-
Van Aalten, D.M.F.1
Amadei, A.2
Linssen, A.B.M.3
Eijsink, V.G.H.4
Vriend, G.5
Berendsen, H.J.C.6
-
20
-
-
0001201618
-
Structure from NMR and molecular dynamics: Distance restraining inhibits motion in the essential subspace
-
Scheek, R.M., Van Nuland, N.A.J., De Groot, B.L., Linssen, A.B.M., Amadei, A. Structure from NMR and molecular dynamics: Distance restraining inhibits motion in the essential subspace. J. Biomol. NMR 6:106-111, 1995.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 106-111
-
-
Scheek, R.M.1
Van Nuland, N.A.J.2
De Groot, B.L.3
Linssen, A.B.M.4
Amadei, A.5
-
21
-
-
0029586726
-
Essential dynamics of the cellular retinol-binding protein - Evidence for ligand-induced conformational changes
-
Van Aalten, D.M.F., Findley, J.B.C., Amadei, A., Berendsen, H.J.C. Essential dynamics of the cellular retinol-binding protein - Evidence for ligand-induced conformational changes. Protein Eng. 8:1129-1135, 1995.
-
(1995)
Protein Eng.
, vol.8
, pp. 1129-1135
-
-
Van Aalten, D.M.F.1
Findley, J.B.C.2
Amadei, A.3
Berendsen, H.J.C.4
-
22
-
-
0030836641
-
The essential dynamics of Cu, Zn superoxide dismutase: Suggestion of intersubunit communication
-
Chillemi, G., Falconi, M., Amadei, A., Zimatore, G., Desideri, A., DiNola, A. The essential dynamics of Cu, Zn superoxide dismutase: Suggestion of intersubunit communication. Biophys. J. 73:1007-1018, 1997.
-
(1997)
Biophys. J.
, vol.73
, pp. 1007-1018
-
-
Chillemi, G.1
Falconi, M.2
Amadei, A.3
Zimatore, G.4
Desideri, A.5
Dinola, A.6
-
23
-
-
0003902144
-
-
Seattle, Washington: Department of Biological Structure, University of Washington
-
Stout, G.H., Jensen, L.H. "X-ray Structure Determination. A Practical Guide." 2nd ed. Seattle, Washington: Department of Biological Structure, University of Washington, 1989.
-
(1989)
"X-ray Structure Determination. A Practical Guide." 2nd Ed.
-
-
Stout, G.H.1
Jensen, L.H.2
-
24
-
-
0029092698
-
Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations
-
Hünenberger, P.H., Mark, A.E., Van Gunsteren, W.F. Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations. J. Mol. Biol. 252:492-503, 1995.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 492-503
-
-
Hünenberger, P.H.1
Mark, A.E.2
Van Gunsteren, W.F.3
-
26
-
-
0029065498
-
Cutinase from Fusarium solani pisi hydrolyzing triglyceride analogues. Effect of acyl chain length and position in the substrate molecule on activity and enantioselectivity
-
Mannesse, M.L.M., Cox, R.C., Koops, B.C. et al. Cutinase from Fusarium solani pisi hydrolyzing triglyceride analogues. Effect of acyl chain length and position in the substrate molecule on activity and enantioselectivity. Biochemistry 34:6400-6407, 1995.
-
(1995)
Biochemistry
, vol.34
, pp. 6400-6407
-
-
Mannesse, M.L.M.1
Cox, R.C.2
Koops, B.C.3
-
27
-
-
0001309005
-
Molecular surface triangulating
-
Connolly, L. Molecular surface triangulating. J. Appl. Cryst. 18:499-505, 1985.
-
(1985)
J. Appl. Cryst.
, vol.18
, pp. 499-505
-
-
Connolly, L.1
-
28
-
-
0030041250
-
Contribution of cutinase serine 42 side chain to the stabilization of the oxyanion transition state
-
Nicolas, A., Egmond, M., Verrips, C.T. et al. Contribution of cutinase serine 42 side chain to the stabilization of the oxyanion transition state. Biochemistry 35:398-410, 1996.
-
(1996)
Biochemistry
, vol.35
, pp. 398-410
-
-
Nicolas, A.1
Egmond, M.2
Verrips, C.T.3
-
29
-
-
0028883212
-
Genome structure and nucleotide sequence of a lipolytic enzyme gene of Aspergillus oryzae
-
Ohnishi, K., Toida, J., Nakazawa, H., Sekiguchi, J. Genome structure and nucleotide sequence of a lipolytic enzyme gene of Aspergillus oryzae. FEMS Microbiol. Lett. 126:145-150, 1995.
-
(1995)
FEMS Microbiol. Lett.
, vol.126
, pp. 145-150
-
-
Ohnishi, K.1
Toida, J.2
Nakazawa, H.3
Sekiguchi, J.4
|