HLA-C high resolution typing: Analysis of exons 2 and 3 by sequence based typing and detection of polymorphisms in exons 1-5 by sequence specific primers

Tissue Antigens

Volumn 52, Issue 3, 1998, Pages 251-259

  Delfino, L ^a   Morabito, A ^a   Longo, A ^a   Ferrara, G B ^a,b  

^a UNIVERSITY OF GENOA   (Italy)

^b ADVANCED BIOTECHNOLOGY CENTER   (Italy)

Author keywords

HLA C; PCR SBT; PCR SSP; Serological typing

Indexed keywords

HLA C ANTIGEN;

ALLELE; ARTICLE; EXON; GENE AMPLIFICATION; HLA TYPING; HUMAN; INTRON; NORMAL HUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; TECHNIQUE;

EID: 0031664269     PISSN: 00012815     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1399-0039.1998.tb03040.x     Document Type: Article

References (44)

1. Bjorkman P, Parham P. Structure, function and diversity of class I major histocompatibility complex molecules. Annu Rev Biochem 1990: 59: 253-88.
2. Townsend A, Bodmer H. Antigen recognition by class-I restricted T lymphocytes. Annu Rev Immunol 1989: 7: 601-24.
3. Keever CA, Leong N, Cunningham I et al. HLA-B44 directed cytotoxic T cells associated with acute graft versus host disease following unrelated bone marrow transplantation. Bone Marrow Transplant 1994: 14: 137-45.
4. Fleischhauer K, Kernan NA, O'Reilly RJ, Dupont B, Yang SY. Bone marrow-allograft rejection by T lymphocytes recognizing a single amino acid difference in HLA-B44. N Engl J Med 1990: 323: 1818-22.
5. Christiansen FT, Tay G, Smith LK et al. Histocompatibility matching for bone marrow transplantation. Donor-recipient pairs in the 4AOHW cell panel. Hum Immunol 1993: 38: 42-51.
6. Petersdorf EW, Stanley JF, Martin PJ, Hansen JA. Molecular diversity of the HLA-C locus in unrelated marrow transplantation. Tissue Antigens 1997: 44: 93-9.
7. Green J, Montasser M, Low HC, Woodrow JC. Investigations of the associations of a number of HLA antigens with psoriasis and psoriatic arthritis. Stat Med 1988: 7: 443-50.
8. Muller CA, Hasmann R, Grosse-Wilde H et al. Significant association of acute lymphoblastic leukaemia with HLA-Cw7. Genet Epidemiol 1988: 5: 453-61.
9. Zhou Y, Chaplin DD. Identification in the HLA class I region of a gene expressed late in keratinocyte differentiation. Proc Natl Acad Sci U S A 1993: 90: 9470-4.
10. Reed E, Ho E, Lupu F et al. Polymorphism of HLA in the Romanian population. Tissue Antigens 1992: 39: 8-13.
11. De Pablo R, Vilches C, Moreno ME, Rementeria MC, Solis R, Kreisler M. Distribution of HLA antigen in Spanish Gypsies: a comparative study. Tissue Antigens 1992: 40: 187-96.
12. Wells RS, Seielstad MT, Bunce M, Tyan DB, Bekele E, Parham P. Cw*1701 defines a divergent African HLA-C allelic lineage. Immunogenetics 1997: 46: 173-80.
13. Little AM, Mason A, Marsh SGE, Parham P. HLA-C typing of eleven Papua New Guineans: identification of an HLA-Cw4/2 hybrid allele. Tissue Antigens 1996: 48: 113-7.
14. Barnardo MC, Davey NJ, Bunce M et al. A correlation between HLA-C matching and donor antirecipient CTL precursor frequency in bone marrow transplantation. Transplantation 1996: 61: 1420-3.
15. Baan CC, Vaessen LMB, Kate FT et al. Rejection of a kidney graft mismatched only for the HLA-C locus and an HLA-Bw22 split. Transplantation 1992: 55: 438-9.
16. Chapman JR, Taylor CJ, Ting A, Morris PJ. Hyperacute rejection of a renal allograft in the presence of anti-HLA Cw5 antibody. Transplantation 1986: 42: 91-3.
17. Petersdorf EW, Longton GM, Anasetti C et al. Association of HLA-C disparity with graft failure after marrow transplantation from unrelated donors. Blood 1997: 89: 1818-3.
18. Grundschober C, Rufer N, Sanchez-Mazas et al. Molecular characterization of HLA-C incompatibilities in HLA-ABDR-matched unrelated bone marrow donor-recipient pairs. Tissue Antigens: 1997: 49: 612-3.
19. Colonna M, Brooks EG, Falco M, Ferrara GB, Strominger JL. Generation of allospecific natural killer cells by stimulation across a polymorphism of HLA-C. Science 1993: 260: 1121-4.
20. Littaua RA, Oldstone MBA, Takeda A et al. An HLA-C restricted CD8+ cytotoxic T-lymphocyte clone recognises a highly conserved epitope on human immunodeficiency virus type lgag. J Virol 1991: 65: 4051-6.
21. Johnson RP, Trocha A, Buchanan TM, Walker BD. Recognition of a highly conserved region of human immunodeficiency virus type 1gp120 by an HLA-Cw4-restricted cytotoxic T-lymphocyte clone. J Virol 1993: 67: 438-45.
22. Dill O, Kievits, Foch S, Ivanyi P, Hammerling GJ. Immunological function of HLA-C antigens in HLA-Cw3 transgenic mice. Proc Natl Acad Sci U S A 1988: 85: 5664-8.
23. D'Amaro J, Van Rood JJ, Bach FH, Rimm AA, Bortin MM. HLA-C associations with acute leukaemia. Lancet 1984: 2: 1176-8.
24. Morrison AW, Mowbray JF, Williamson R, Sheeka S, Sodha N, Koskinene N. On genetic and environmental factors in Mernier's disease. Am J Otol 1994: 15: 35-9.
25. Sanz L, Gonzalez-Escribano F, de Pablo R, Nunez-Roldan A, Kreisler M, Vilches C. HLA-CW*1602: a new susceptibility marker of Behçet's disease in southern Spain. Tissue Antigen 1998: 51: 111-4.
26. Ikaheimo I, Silvennoinen-Kassinene S, Karvonen J, Tiilikainen A. Alanine at position 73 of HLA-C is associated with psoriasis vulgaris in Finland. Br J Dermatol 1994: 131: 257-9.
27. Bodmer JG, Marsh SGE, Albert ED et al. Nomenclature for factors of the HLA system 1996. Tissue Antigens 1997: 49: 297-321.
28. Mason PM, Parham P. HLA class I region sequences, 1998. Tissue Antigens 1998: 51: 417-66.
29. Aizawa M. Antigens and gene frequencies of ethnic groups. In: Aizawa M, Natori T, Wakisaka A, Konoeda Y, ed. HLA in Asia-Oceania. Sapporo, Japan: Hokkaido University Press, 1986: 1079-91.
30. Baur MP, Neugebauer M, Albert ED. Reference tables of two-locus haplotype frequencies for all MHC marker loci. In: Albert ED, Baur MP, Mayr WR, eds. Histocompatibility testing. Berlin: Springer-Verlag, 1984: 677-755.
31. Takiguchi M, Nishimura I, Hayashi H, Karaki S, Karyone A, Kano K. The structure and expression of genes encoding serologically undetected HLA-C locus antigens. J Immunol 1989: 143: 1372.
32. Ferrara GB, Tosi RM, Longo A, Azzolina G, Caminati G. Low immunogenicity of the third HLA series. Transplantation 1975: 20: 340-3.
33. Ferrara GB, Tosi R, Longo A, Castellani A, Viviani C, Carminati G. "Silent" alleles at HLA-C locus. J Immunol 1978: 121: 731-5.
34. Tatari Z, Fortier C, Bobrynina V, Loiseau P, Charron D, Raffoux C. HLA-Cw allele analysis by PCR-restriction fragment lenght polymorphism: study of known and additional alleles. Proc Natl Acad Sci U S A 1995: 92: 8803-7.
35. Kennedy LJ, Poulton KV, Dyer PA, Ollier WER, Thomson W. Definition of HLA-C alleles using sequence-specific oligonucleotide probes (PCR-SSOP). Tissue Antigens 1995: 46: 187-95.
36. Levine JE, Yang SY. SSOP typing of the Tenth International Histocompatibility Workshop reference cell lines for HLA-C alleles. Tissue Antigens 1994: 44: 174-83.
37. Bunce M, Kenneth IW. Rapid DNA typing for HLA-C using sequence specific primers (PCR-SSP): identification of serological and non-serologically defined HLA-C alleles including several new alleles. Tissue Antigens 1994: 43: 7-17.
38. Bunce M, Barnardo MCNM, Procter J, Marsh SGE, Vilches C, Welsh KI. High resolution HLA-C typing by PCR-SSP: identification of allelic frequencies and linkage disequilibria in 604 unrelated random UK Caucasoids and comparison with serology. Tissue Antigens 1997: 50: 100-11.
39. Wang H, Tokunaga K, Ishikawa Y et al. A high-resolution genotyping method for HLA-C alleles and possible shared HLA-C-B haplotypes between Japanese and Caucasians. Tissue Antigens 1997: 50: 620-6.
40. Luedeck H, Blasczyk R. Fluorotyping of HLA-C: differential detection of amplicons by sequence-specific priming and fluorogenic probing. Tissue Antigens 1997: 50: 627-38.
41. Schlesinger BC, Laumbacher B, Wank R. Sequence based typing (SBT) of HLA-C alleles in 214 Caucasians using the automated DNA sequencer ALF. In: Charron D, ed. Genetic diversity of HLA. Functional and medical implication. Vol II. Paris: EDK Medical and Scientific International Publishers, 1997: 380-2.
42. Fae' I, Perrasek M, Broer E, Mayr WR, Fischer GF. Nucleotide sequencing analysis of HLA-C alleles. In: Charron D, ed. Genetic diversity of HLA. Functional and medical implication. Vol II. Paris: EDK Medical and Scientific International Publishers, 1997: 378-9.
43. Bettinotti MP, Mitsuishi Y, Lau M, Terasaki PI. Improved direct sequencing system for accurate detection of heterozygosity in HLA-A, B and C loci. In: Charron D, ed. Genetic diversity of HLA. Functional and medical implication. Vol II. Paris: EDK Medical and Scientific International Publishers, 1997: 373-4.
44. Miller SA, Dykes DD, Polesky HF. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 1988: 16: 1215-8.