Fluorotyping of HLA-C: Differential detection of amplicons by sequence-specific priming and fluorogenic probing

Tissue Antigens

Volumn 50, Issue 6, 1997, Pages 627-638

  Luedeck, H ^a   Blasczyk, R ^a  

^a HUMBOLDT UNIVERSITY   (Germany)

Author keywords

5' 3' exonuclease activity of TaqPolymerase; Fluorogenic detection; HLA C; PCR; Sequence specific priming

Indexed keywords

DNA POLYMERASE; HLA C ANTIGEN;

ARTICLE; HLA TYPING; OLIGONUCLEOTIDE PROBE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

EID: 0031440932     PISSN: 00012815     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1399-0039.1997.tb02921.x     Document Type: Article

References (35)

1. Petersdorf EW, Stanley JF, Martin OJ, Hansen JA. Molecular diversity of the HLA-C locus in unrelated marrow transplantation. Tissue Antigens 1994: 44: 93-9.
2. Starzl TE, Demetris AJ, Trucco M et al. Chimerism after liver transplantation for type IV glycogen storage disease and type 1 Gaucher's disease. N Engl J Med 1993: 328: 745-9.
3. Eastmond CJ. Psoriatic arthritis. Genetics and HLA antigens. Baillieres Clin Rheumatol 1994: 8: 263-76.
4. Beaulieu AD, Roy R, Mathon G et al. Psoriatic arthritis: risk factors for patients with psoriasis - a study based on histocompatibility antigen frequencies. J Rheumatol 1983: 10: 633-6.
5. Zhou Y, Chaplin DD. Identification in the HLA class I region of a gene expressed late in keratinocyte differentiation. Proc Natl Acad Sci U S A 1993: 90: 9470-4.
6. Muller CA, Hasmann R, Grosse-Wilde H et al. Significant association of acute lymphoblastic leukemia with Cw*07. Genet Epidemiol 1988: 5: 453-61.
7. Little AM, Mason A, Marsh SGE, Parham P. HLA-C typing of eleven Papua New Guineans: identification of an HLA-Cw*04/Cw*02 hybrid allele. Tissue Antigens 1996: 48: 113-17.
8. Reed E, Ho E, Lupu F et al. Polymorphism of HLA in the Roman Population. Tissue Antigens 1992 : 39: 8-13.
9. De Pablo R, Vilches C, Moreno ME, Rementeria MC, Solis R, Kreisler M. Distribution of HLA antigen in Spanish Gypsies: a comparative study. Tissue Antigens 1992: 40: 187-96.
10. Howard PL, Collins CC, Heintz NH. Polymerase chain reaction and allele-specific oligonucleotides in paternity testing of the deceased. Transfusion 1991: 31: 441-2.
11. Bidwell J, Bidwell E, Savage D, Middleton D, Klouda P, Bradley B. A DNA-RFLP typing system that positively identifies serologically well-defined and ill-defined HLA-DR and DQ alleles including DRw10. Transplantation 1988: 45: 640-6.
12. Tiercy JM, Goumaz C, Mach B, Jeannet M. Application of HLA-DR oligotyping to 110 kidney transplant patients with doubtful serological typing. Transplantation 1991: 51: 1110-4.
13. Bein G, Gläser R, Kirchner H. Rapid HLA-DRB1 genotyping by nested PCR amplification. Tissue Antigens 1992: 39: 68-73.
14. Olerup O, Zetterquist H. HLA-DR typing by PCR amplification with sequence-specific primers (PCR-SSP) in 2 hours: an alternative to serological DR typing in clinical practice including donor-recipient matching in cadaveric transplantation. Tissue Antigens 1992: 39: 225-35.
15. McGinnis MD, Conrad MP, Bouwens AG, Tilanus MG, Kronick MN. Automated, solid-phase sequencing of DRB region genes using T7 sequencing chemistry and dye labeled primers. Tissue Antigens 1995: 46: 173-9.
16. Bugawan TL, Apple TR, Erlich HA. A method for typing polymorphism at the HLA-A locus using PCR amplification and immobilized oligonucleotide probes. Tissue Antigens 1994: 44: 137-47.
17. Fernandez-Viña M, Lazaro AM, Sun Y, Miller S, Forero L, Stastny P. Population diversity of B-locus alleles observed by high-resolution DNA typing. Tissue Antigens 1995: 45: 153-68.
18. Bunce M, O'Neill CM, Barnardo MC et al. Phototyping: comprehensive DNA typing for HLA-A, B. C, DRB1, DRB3, DRB4, DRB5 & DQB1 by PCR with 144 primer mixes utilizing sequence-specific primers (PCR-SSP). Tissue Antigens 1995: 46: 355-67.
19. Blasczyk R, Hahn U, Wehling J, Huhn D, Salama A. Complete subtyping of the HLA-A locus by sequence-specific amplification followed by direct sequencing or single strand conformation polymorphism analysis. Tissue Antigens 1995: 46: 86-95.
20. Kotsch K, Wehling J, Köhler S, Blasczyk R. Sequencing of HLA class I genes based on the conserved diversity of the noncoding regions: sequencing-based typing of the HLA-A gene. Tissue Antigens 1997: 50: 178-191.
21. Bodmer JG, Marsh SG, Albert ED et al. Nomenclature for factors of the HLA system, 1996. Tissue Antigens 1997: 49: 297-321.
22. Newton CR, Graham A, Heptinstall LE et al. Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS). Nucleic Acids Res 1989: 17: 2503-16.
23. Ferencik S, Grosse-Wilde H. A simple detection method for HLA-DRB1 specific PCR-SSP products. Eur J Immunogenet 1993: 20: 123-5.
24. Chia D, Terasaki P, Chan H, Tonai R, Siauw PA. Direct detection of PCR products for HLA class II typing. Tissue Antigens 1993: 42: 146-9.
25. Bein G, Haase D, Schult J, Eiermann TH, Kirchner H. Semiautomated HLA-DQB1 typing by fluorescent dye photometry of amplified DNA on microtiter plates. Hum Immunol 1994: 39: 1-8.
26. Lee GL, Conell CR, Bloch W. Allelic discrimination by nick-translation PCR with fluorogenic probes. Nucleic Acids Res 1993: 16: 3761-66.
27. Faas SJ, Menon R, Braun ER, Rudert WA, Trucco M. Sequence-specific priming and exonuclease-released fluorescence detection of HLA-DQB1 alleles. Tissue Antigens 1996: 48: 97-112.
28. Holland PM, Abramson RD, Watson R, Gelfand DH. Detection of specific polymerase chain reaction product by utilizing the 5′-3′ exonuclease activity of Thermus aquaticus. Proc Natl Acad Sci USA 1991: 88: 7276-80.
29. Livak KJ, Marmaro J, Todd JA. Towards fully automated genome-wide polymorphism screening. Nature Genet 1995: 9: 341-2.
30. Livak KJ, Flood SJA, Marmaro J, Giusti W, Deetz K. Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization. PCR Methods Appl 1995: 4: 1-6.
31. Förster VTH. Zwischenmolekulare Energiewanderung und Fluoreszenz. Ann Phys (Leipzig) 1948: 2: 55-75.
32. Blasczyk R, Wehling J, Weber M, Salama A. Sequence analysis of the 2nd intron revealed common sequence motifs providing the means for a unique sequencing based typing protocol of the HLA-A locus. Tissue Antigens 1996: 47: 102-10.
33. Cereb N, Kong Y, Lee S, Maye P, Yang SY. Nucleotide sequences of MHC class I introns 1, 2, and 3 in humans and intron 2 in nonhuman primates. Tissue Antigens 1996: 47: 498-511.
34. Summers CW, Hampson VJ, Taylor GM. HLA class I noncoding nucleotide sequences, 1992. Eur J Immunogenet 1993: 20: 201-40.
35. Beyer WH. Standard mathematical tables. 27th edn. Boca Raton, FL: CRC Press, 1984.