Classification of auxin plant hormones by interaction property similarity indices

Journal of Computer-Aided Molecular Design

Volumn 12, Issue 1, 1998, Pages 63-79

  Tomić, Sanja ^a,b   Gabdoulline, Razif R ^a   Kojić Prodić, Biserka ^b   Wade, Rebecca C ^a  

^a EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^b RUDER BO KOVI INSTITUTE   (Croatia)

Author keywords

Auxins; Molecular alignment; Molecular interaction field; Molecular modeling; QSAR; Similarity index

Indexed keywords

COMPUTATIONAL CHEMISTRY; CONFORMATIONS; ENDOCRINOLOGY; HORMONES; MOLECULAR GRAPHICS; MOLECULAR INTERACTIONS; MOLECULAR STRUCTURE;

AUXIN; BEST MATCH; INDOLE-3-ACETIC ACID; INTERACTION PROPERTIES; LOW-ENERGY CONFORMATIONS; MOLECULAR INTERACTION FIELDS; MOLECULAR MECHANISM; PLANT HORMONE; QSAR; SIMILARITY INDICES;

MOLECULAR MODELING;

INDOLEACETIC ACID DERIVATIVE;

ARTICLE; CHEMICAL MODEL; CHEMICAL STRUCTURE; CHEMISTRY; CLASSIFICATION; COMPUTER SIMULATION; CONFORMATION; STRUCTURE ACTIVITY RELATION; THERMODYNAMICS;

COMPUTER SIMULATION; INDOLEACETIC ACIDS; MODELS, CHEMICAL; MOLECULAR CONFORMATION; MOLECULAR STRUCTURE; STRUCTURE-ACTIVITY RELATIONSHIP; THERMODYNAMICS;

EID: 0031634739     PISSN: 0920654X     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1007973008558     Document Type: Article

References (79)

1. Davies, P.J., Plant Hormones and Their Role in Plant Growth and Development, Martinus Nijhoff, Dordrecht, The Netherlands, 1987.
2. Thimann, K.V., Hormone Action in the Whole Life of Plants, The University of Massachusetts Press, Amherst, MA, U.S.A., 1977.
3. Palme, K.J., Plant Growth Regul., 12 (1993) 171.
4. Klämbt, D., Plant Mol. Biol., 14 (1990) 1045.
5. Jones, A.M., Physiol. Plant., 80 (1990) 154.
6. Jones, A.M. and Prasad, P.V., BioEssays, 14 (1992) 43.
7. Venis, M.A. and Napier, M., Crit. Rev. Plant Sci., 14 (1995) 27.
8. Tian, H., Klämbt, D. and Jones, A.M., J. Biol. Chem., 270 (1995) 26962.
9. Löbler, M. and Klämbt, D., J. Biol. Chem., 260 (1985) 9848.
10. Shimomura, S., Sotobayashi, S., Futai, M. and Fukui, T., J. Biochem., 99 (1986) 1513.
11. Inohara, N., Shimomura, S., Fukui, T. and Futai, M., Proc. Natl. Acad. Sci. USA, 86 (1989) 3564.
12. Napier, R.M., Venis, M.A., Bolton, M.A., Richardson, L.I. and Butcher, G.W., Planta, 176 (1988) 519.
13. Veldstra, H., Enzymologia, 11 (1944) 97.
14. Porter, W.L. and Thimann, K.V., Phytochemistry, 4 (1965) 229.
15. Kaethner, J.M., Nature, 267 (1977) 19.
16. Farrimond, J.A., Elliott, M.C. and Clark, D.W., Nature, 274 (1978) 401.
17. Lehmann, P.A.F., Chem.-Biol. Interact., 20 (1978) 239.
18. Rakhaminova, A.B., Khavkin, E.E. and Yaguzhinskii, L.S., Biokhimiya, 43 (1978) 806.
19. Katekar, G.F., Phytochemistry, 18 (1979) 223.
20. Pattabhi, V., Curr. Sci., 59 (1990) 1228.
21. Bures, M.G., Black-Schaefer, C. and Gardner, G., J. Comput.-Aided Mol. Design, 5 (1991) 323.
22. Kojić-Prodić, B., Nigović, B., Tomić, S., Ilić, N., Magnus, V., Konjevic, R., Giba, Z. and Duax, W.L., Acta Crystallogr., B47 (1991) 1010.
23. Nigović, B., Kojić-Prodić, B., Antolić, S., Tomić, S., Puntarec, V. and Cohen, J.D., Acta Crystallogr., B52 (1996) 332.
24. Antolić, S., Kojić-Prodić, B., Tomić, S., Nigović, B., Magnus, V. and Cohen, J.D., Acta Crystallogr., B52 (1996) 651.
25. Edgerton, M.D., Tropsha, A. and Jones, A.M., Phytochemistry, 35 (1994) 1111.
26. Beale, M.H. and Sponsel, J., Plant Growth Regul., 12 (1996) 227.
27. Ramek, M., Tomić, S. and Kojić-Prodić, B., Int. J. Quant. Chem., Quant. Biol. Symp., 22 (1995) 75.
28. Ramek, M., Tomić, S. and Kojić-Prodić, B., Int. J. Quant. Chem., 60 (1996) 1727.
29. Lutz, B.T.G., Van der Windt, E., Kanters, J., Klämbt, D., Kojić-Prodic, B. and Ramek, M., J. Mol. Struct., 382 (1996) 177.
30. Wade, R.C., In Kubinyi, H. (Ed.) 3D QSAR in Drug Design: Theory, Methods and Applications, ESCOM, Leiden, The Netherlands, 1993, pp. 486-505.
31. Good, A.C., In Dean, P.M. (Ed.) Molecular Similarity in Drug Design, Blackie Academic & Professional, London, U.K., 1995, pp. 1-23.
32. Burt, C. and Richards, G., J. Comput. Chem., 11 (1990) 1139.
33. Richard, A.M., J. Comput. Chem., 12 (1991) 959.
34. Carbo, R., Arnau, M. and Leyda, L., Int. J. Quant. Chem., 17 (1980) 1185.
35. Klebe, G., Abraham, U. and Mietzner, T., J. Med. Chem., 37 (1994) 4130.
36. Cramer III, R.D., De Priest, S.A., Patterson, D.E. and Hecht, P., In Kubinyi, H. (Ed.) 3D QSAR in Drug Design: Theory, Methods and Applications, ESCOM, Leiden, The Netherlands, 1993, pp. 443-485.
37. Kearsley, S.K. and Smith, G.M., Tetrahedron Comput. Methodol., 3 (1990) 615.
38. Bagdassarian, C.K., Schramm, V.L. and Schwartz, S.D., J. Am. Chem. Soc., 118 (1996) 8825.
39. Carbo, R. and Calabuig, B., Int. J. Quant. Chem., 42 (1992) 1681.
40. Hodgkin, E.E. and Richards, W.G., Int. J. Quant. Chem., Quant. Biol. Symp., 14 (1987) 105.
41. Good, E.E., Hodgkin, E.E. and Richards, W.G., J. Chem. Inf. Comput. Sci., 32 (1992) 188.
42. Ray, P.M., Dohrmann, U. and Hartel, R., Plant Physiol., 60 (1977) 585.
43. Hatano, T., Katayama, M. and Marumo, S., Experientia, 43 (1987) 1237.
44. Hatano, T., Kato, Y., Katayama, M. and Marumo, S., Experientia, 45 (1989) 400.
45. Katayama, M., Kato, Y., Kimoto, H. and Fuji, S., Experientia, 51 (1995) 721.
46. Katekar, G.F. and Geissler, A.E., Phytochemistry, 21 (1982) 257.
47. Katekar, G.F. and Geissler, A.E., Phytochemistry, 22 (1983) 27.
48. Rescher, U., Walther, A., Schiebl, C. and Klämbt, D., J. Plant Growth Regul., 15 (1996) 1.
49. Reinecke, D.M., Ozga, J.A. and Magnus, V., Phytochemistry, 40 (1995) 1361.
50. Wain, R.L. and Wightman, F., Ann. Appl. Biol., 40 (1953) 244.
51. Fawcett, C.H., Wain, R.L. and Wightman, F., Ann. Appl. Biol., 43 (1955) 342.
52. Veldstra, H. and Van der Westeringh, C., Recl. Trav. Chim. Pays-Bas, 70 (1951) 1113.
53. Bruström, H., Physiol. Plant., 3 (1950) 277.
54. Nitsch, J.P. and Nitsch, C., Plant Physiol., 3 (1956) 94.
55. Mür, R.M. and Hansch, C., Physiol. Plant., 28 (1953) 218.
56. Stenlid, G. and Engvild, K.C., Physiol. Plant., 70 (1987) 109.
57. Böttger, M., Engvild, K.C. and Soll, H., Planta, 140 (1978) 89.
58. Toothill, J.R., Wain, R.L. and Wightman, F., Ann. Appl. Biol., 44 (1956) 547.
59. Hansen, B., I. Bot. Nat., (1954) 230.
60. Veldstra, H., Recl. Trav. Chim. Pays-Bas, 71 (1952) 15.
61. Pybus, M.F., Wain, R.L. and Wightman, F., Nature, 182 (1958) 1094.
62. Smith, G., Kennard, C.H.L. and White, A.H., Acta Crystallogr., B34 (1978) 2885.
63. Hoffmann, A.L., Fox, S.W. and Bullock, M.W., J. Biol. Chem., 196 (1952) 437.
64. INSIGHT, v. 95, Biosym Technologies, San Diego, CA, U.S.A., 1995.
65. DISCOVER, v. 2.97, Biosym Technologies, San Diego, CA, U.S.A., 1995.
66. Maple, J.R., Thacher, T.S., Dinur, U. and Hagler, A.T., Chem. Design Autom. News, 5(9) (1990) 5.
67. Gundertofte, K., Liljefors, T., Norrby, P.O. and Pettersson, I., J. Comput. Chem., 17 (1996) 429.
68. Dauber-Osguthorpe, P., Roberts, V.A., Osguthorpe, D.J., Wolff, J., Genest, M. and Hagler, A.T., Proteins Struct. Funct. Genet., 4 (1988) 31.
69. Mulliken, R.S., J. Chem. Phys., 23 (1955) 1833.
70. Tomić, S., Ph.D. Thesis, University of Zagreb, Zagreb, Croatia, 1993.
71. GRID user manual, edition 14, Molecular Discovery Ltd., Oxford, U.K.
72. Goodford, P.J., J. Med. Chem., 28 (1985) 849.
73. Boobbyer, D.N.A., Goodford, P.J., McWhinnie, P.M. and Wade, R.C., J. Med. Chem., 32 (1989) 1083.
74. Wade, R.C., Clark, K.J. and Goodford, P.J., J. Med. Chem., 36 (1993) 140.
75. Wade, R.C. and Goodford, P.J., J. Med. Chem., 36 (1993) 148.
76. Gabdoulline, R.R. and Wade, R.C., J. Mol. Graph., 14 (1996) 341.
77. Korn, G.A. and Korn, T.M., Mathematical Handbook for Scientists and Engineers, McGraw-Hill, New York, NY, U.S.A., 1961.
78. Stewart, J.J.P., J. Comput. Chem., 10 (1989) 209.
79. Tomić, S., Ramek, M. and Kojić-Prodić, B., Croat. Chem. Acta, (1998) in press.