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Volumn , Issue , 1998, Pages 212-221

A map of the protein space - An automatic hierarchical classification of all protein sequences

Author keywords

clustering; protein classification; protein families; sequence alignment; sequence homology

Indexed keywords

CLASSIFICATION (OF INFORMATION); DIRECTED GRAPHS;

EID: 0031614138     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (25)

References (27)
  • 2
    • 0025878149 scopus 로고
    • Amino acid substitution matrices from an information theoretic perspective
    • Altschul, S. F. (1991). Amino acid substitution matrices from an information theoretic perspective. Journal of Molecular Biology 2010: 555-565.
    • (1991) Journal of Molecular Biology , vol.2010 , pp. 555-565
    • Altschul, S. F.1
  • 4
    • 0026562263 scopus 로고
    • The SWISS-PROT protein sequence data bank
    • Bairoch, A., and Boeckman, B. (1992). The SWISS-PROT protein sequence data bank. Nucleic Acid Research 20: 2019-2022.
    • (1992) Nucleic Acid Research , vol.20 , pp. 2019-2022
    • Bairoch, A.1    Boeckman, B.2
  • 5
    • 0026817136 scopus 로고
    • Reconstructing history with amino acid sequences
    • Doolittle, R. F. (1992). Reconstructing history with amino acid sequences. Protein Science 1: 191-200.
    • (1992) Protein Science , vol.1 , pp. 191-200
    • Doolittle, R. F.1
  • 6
    • 0027485083 scopus 로고
    • Comparison of conformational characteristics in structurally similar protein pairs
    • Flores, T. P.; Orengo, C. A.; Moss, D.; and Thoronton, J. M. (1993). Comparison of conformational characteristics in structurally similar protein pairs. Protein Science 2: 1811-1826.
    • (1993) Protein Science , vol.2 , pp. 1811-1826
    • Flores, T. P.1    Orengo, C. A.2    Moss, D.3    Thoronton, J. M.4
  • 8
    • 0027363912 scopus 로고
    • Structural relationships of homologous proteins as a fundamental principle in homology modeling
    • Hilbert, M.; Böhm, G.; and Jaenicke, R. (1993). Structural relationships of homologous proteins as a fundamental principle in homology modeling. Proteins 17: 138-151.
    • (1993) Proteins , vol.17 , pp. 138-151
    • Hilbert, M.1    Böhm, G.2    Jaenicke, R.3
  • 10
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin, S., and Altschul, S. F. (1990). Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proceedings of the National Academy of Science (USA) 87: 2264-2268.
    • (1990) Proceedings of the National Academy of Science (USA) , vol.87 , pp. 2264-2268
    • Karlin, S.1    Altschul, S. F.2
  • 12
    • 0031547967 scopus 로고    scopus 로고
    • Global self organization of all known protein sequences reveals inherent biological signatures
    • Linial, M.; Linial, N.; Tishby, N.; and Yona, G. (1997). Global self organization of all known protein sequences reveals inherent biological signatures. Journal of Molecular Biology 268: 539-556.
    • (1997) Journal of Molecular Biology , vol.268 , pp. 539-556
    • Linial, M.1    Linial, N.2    Tishby, N.3    Yona, G.4
  • 13
    • 0021919480 scopus 로고
    • Rapid and sensitive protein similarity
    • Lipman, D. J., and Pearson, W. R. (1985). Rapid and sensitive protein similarity. Science 227: 1435-1441
    • (1985) Science , vol.227 , pp. 1435-1441
    • Lipman, D. J.1    Pearson, W. R.2
  • 14
    • 0027479161 scopus 로고
    • OBoligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences
    • Murzin, A. G. (1993). OBoligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences. EMBO Journal 12(5): 861-867.
    • (1993) EMBO Journal , vol.12 , Issue.5 , pp. 861-867
    • Murzin, A. G.1
  • 15
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman, S. B., and Wunsch, C. D. (1970). A general method applicable to the search for similarities in the amino acid sequence of two proteins. Journal of Molecular Biology 48: 443-453.
    • (1970) Journal of Molecular Biology , vol.48 , pp. 443-453
    • Needleman, S. B.1    Wunsch, C. D.2
  • 16
    • 0030788541 scopus 로고    scopus 로고
    • Extracting protein alignment models from the sequence database
    • Neuwald, A. F.; Liu, J. S.; Lipman, D. J.; and Lawrence, C. E. (1997). Extracting protein alignment models from the sequence database. Nucleic Acid Research 25(9): 1665-1677.
    • (1997) Nucleic Acid Research , vol.25 , Issue.9 , pp. 1665-1677
    • Neuwald, A. F.1    Liu, J. S.2    Lipman, D. J.3    Lawrence, C. E.4
  • 17
    • 0028239912 scopus 로고
    • GTPase: multifunctional molecular switches regulating vesicular traffic
    • Nuolfer, C., and Balch, W. (1994). GTPase: multifunctional molecular switches regulating vesicular traffic. Annual Review of Biochemistry 63: 949-990.
    • (1994) Annual Review of Biochemistry , vol.63 , pp. 949-990
    • Nuolfer, C.1    Balch, W.2
  • 18
    • 0029006770 scopus 로고
    • Comparison of methods for searching protein sequence databases
    • Pearson, W. R. (1995). Comparison of methods for searching protein sequence databases. Protein Science 4: 1145-1160.
    • (1995) Protein Science , vol.4 , pp. 1145-1160
    • Pearson, W. R.1
  • 19
    • 0029933671 scopus 로고    scopus 로고
    • Effiective protein sequence comparison
    • Pearson, W. R. (1996). Effiective protein sequence comparison. Methods Enzymol 266: pp 227-258..
    • (1996) Methods Enzymol , vol.266 , pp. 227-258
    • Pearson, W. R.1
  • 20
    • 0030776390 scopus 로고    scopus 로고
    • Identifying distantly related protein sequences
    • Pearson, W. R. (1997). Identifying distantly related protein sequences. Computer Applications in the Biosciences 13,4: 325-332.
    • (1997) Computer Applications in the Biosciences , vol.13 , Issue.4 , pp. 325-332
    • Pearson, W. R.1
  • 21
    • 0032512799 scopus 로고    scopus 로고
    • Empirical statistical estimates for sequence similarity searches
    • Pearson, W. R. (1998). Empirical statistical estimates for sequence similarity searches. Journal of Molecular Biology 276: 71-84.
    • (1998) Journal of Molecular Biology , vol.276 , pp. 71-84
    • Pearson, W. R.1
  • 22
    • 0030867578 scopus 로고    scopus 로고
    • Microbial genomes come tumbling in
    • Pennisi, E. (1997). Microbial genomes come tumbling in. Science 277: 1433.
    • (1997) Science , vol.277 , pp. 1433
    • Pennisi, E.1
  • 24
    • 0026030641 scopus 로고
    • Database of homology-derived protein structures and the structural meaning of sequence alignment
    • Sander, C, and Schneider, R. (1991). Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins 56-68.
    • (1991) Proteins , pp. 56-68
    • Sander, C1    Schneider, R.2
  • 26
    • 0029074668 scopus 로고
    • A comprehensive representation of extensive similarity linkage between Watanabe, H., and Otsuka, J. (1995). A comprehensive representation of extensive similarity linkage between large numbers of proteins
    • Watanabe, H., and Otsuka, J. (1995). A comprehensive representation of extensive similarity linkage between Watanabe, H., and Otsuka, J. (1995). A comprehensive representation of extensive similarity linkage between large numbers of proteins. Computer Applications in the Biosciences 11(2): 159-166.
    • (1995) Computer Applications in the Biosciences , vol.11 , Issue.2 , pp. 159-166
    • Watanabe, H.1    Otsuka, J.2
  • 27
    • 0001514262 scopus 로고
    • Statistics of local complexity in amino acid sequences and sequence databases
    • Wootton, J. C, and Federhen, S. (1993). Statistics of local complexity in amino acid sequences and sequence databases. Computers in Chemistry 17: 149-163.
    • (1993) Computers in Chemistry , vol.17 , pp. 149-163
    • Wootton, J. C1    Federhen, S.2


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