Dynamics of regulatory evolution in primate β-globin gene clusters: cis-mediated aquisition of simian γ fetal expression patterns

Gene

Volumn 205, Issue 1-2, 1997, Pages 47-57

  Chiu, C H ^a   Schneider, H ^b   Slightom, J L ^c   Gumucio, D L ^d   Goodman, M ^a  

^a WAYNE STATE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b FEDERAL UNIVERSITY OF PARÁ   (Brazil)

^c PFIZER INC   (United States)

^d UNIVERSITY OF MICHIGAN   (United States)

Author keywords

globin genes; Gene conversions; Locus Control Region; New World monkeys

Indexed keywords

BETA GLOBIN; CIS ACTING ELEMENT;

CONFERENCE PAPER; DNA FLANKING REGION; DYNAMICS; EVOLUTION; GENE CLUSTER; GENE CONVERSION; GENE DUPLICATION; GENE EXPRESSION; GLOBIN GENE; HUMAN; MONKEY; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; PHYLOGENY; PRIORITY JOURNAL; PROMOTER REGION;

ANIMALS; BASE SEQUENCE; DNA; EVOLUTION, MOLECULAR; FETUS; GENE CONVERSION; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GLOBINS; HUMANS; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PRIMATES; PROMOTER REGIONS (GENETICS); SEQUENCE HOMOLOGY, NUCLEIC ACID;

CERCOPITHECIDAE; HOMO; PLATYRRHINI; PRIMATES; SIMIAE;

EID: 0031593159     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(97)00476-9     Document Type: Conference Paper

References (47)

1. Alter, B.P., 1979. The Gγ:Aγ composition of fetal hemoglobin in fetuses and newborns. Blood 54, 1158-1163.
2. Bailey, W.J., Hayasaka, K., Skinner, C.G., Kehoe, S., Sieu, L.C., Slightom, J.L., Goodman, M., 1992. Reexamination of the African hominoid trichotomy with additional sequences from the primate β-globin gene cluster. Mol. Phylogen. Evol. 1, 97-135.
3. Barrie, P.A., Jeffreys, A.J., Scott, A.F., 1981. Evolution of the β-globin gene cluster in man and the primates. J. Mol. Biol. 149, 319-336.
4. Bresnick, E.H., Tze, L., 1997. Synergism between hypersensitive sites confers long-range gene activation by the β-globin locus control region. Proc. Natl. Acad. Sci. USA 94, 4566-4571.
5. Bunn, H.F., Forget, B.G., 1986. Hemoglobin: Molecular, Genetic, and Clinical Aspects. W. B. Saunders, Philadelphia, PA.
6. Cabot, E.L., Beckenbach, A.T., 1989. Simultaneous editing of multiple nucleic acid and protein sequences with ESEE. Comp. Appl. Biosci. 5, 233-234.
7. Chiu, C.-H., Schneider, H., Schneider, M.P.C., Sampaio, I., Meireles, C.M.M., Slightom, J.L., Gumucio, D.L., Goodman, M., 1996. Reduction of two functional γ-globin genes to one: an evolutionary trend in New World monkeys (Infraorder Platyrrhini). Proc. Natl. Acad. Sci. USA 93, 6510-6515.
8. Collins, F.S., Weissman, S.M., 1984. The molecular genetics of human hemoglobins. Prog. Nucl. Acid Res. Mol. Biol. 31, 315-462.
9. Dierks, P., van Ooyen, A., Cochran, M.D., Dobkin, C., Reiser, J., Weissmann, C., 1983. Three regions upstream from the cap site are required for efficient and accurate transcription of the rabbit β-globin gene in mouse 3T3 cells. Cell 32, 695-706.
10. Engel, J.D., 1993. Developmental regulation of human β-globin gene transcription: a switch of loyalties? Trends Genet. 9, 304-309.
11. Fitch, D.H.A., Bailey, W.J., Tagle, D.A., Goodman, M., Sieu, L., Slightom, J.L., 1991. Duplication of the γ-globin gene mediated by L1 long interspersed repetitive elements in an early ancestor of simian primates. Proc. Natl. Acad. Sci. USA 88, 7396-7400.
12. Fitch, D.H.A., Mainone, A.C., Goodman, M., Slightom, J.L., 1990. Molecular history of gene conversions in the primate fetal γ-globin genes. J. Biol. Chem. 265, 781-793.
13. Goodman, M., Koop, B.F., Czelusniak, J., Weiss, M.L., Slightom, J.L., 1984. The η-globin gene: its long evolutionary history in the β-globin gene family of mammals. J. Mol. Biol. 180, 803-823.
14. Goodman, M., Slightom, J.L., Gumucio, D.L., 1996. Molecular evolution in the β-globin gene family of mammals, emergence of redundant genes, important new genes, and new expression patterns. In: R.S. Holmes, H.A. Lim (Eds.), Gene Families: Structure, Function, Genetics, and Evolution. World Scientific, Singapore, pp. 43-52.
15. Gumucio, D.L., Heilstedt-Williamson, H., Gray, T.A., Tarle, S., Shelton, D.A., Tagle, D.A., Slightom, J.L., Goodman, M., Collins, F.S., 1992. Phylogenetic footprinting reveals a nuclear protein which binds to silencer sequences in the human γ and ε-globin genes. Mol. Cell. Biol. 13, 3277-3281.
16. Gumucio, D.L., Shelton, D.A., Blanchard-McQuate, K., Gray, T., Tarle, S., Heilstedt-Williamson, H., Slightom, J.L., Collins, F., Goodman, M., 1994. Differential phylogenetic footprinting as a means to identify base changes responsible for recruitment of the anthropoid γ gene to a fetal expression pattern. J. Biol. Chem. 269, 15371-15380.
17. Hanscombe, O., Whyatt, D., Fraser, P., Yannoutsos, N., Greaves, D., Dillon, N., Grosveld, F., 1991. Importance of globin gene order for correct developmental expression. Genes and Development 5, 1387-1394.
18. Harris, S., Barrie, P.A., Weiss, M.L., Jeffreys, A.J., 1984. The primate ψβ1 gene: an ancient β-globin pseudogene. J. Mol. Biol. 180, 785-801.
19. Hayasaka, K., Fitch, D.H.A., Slightom, J.L., Goodman, M., Fetal recruitment of anthropoid γ-globin genes: findings from phylogenetic analyses involving 5′-flanking sequences of the ψγ1 globin gene of spider monkey Ateles geoffroyi. 1992. J. Mol. Biol. 224, 875-881.
20. Hayasaka, K., Skinner, C.G., Goodman, M., Slightom, J.L., 1993. The γ-globin genes and their flanking sequences in primates: findings with nucleotide sequences of capuchin monkey and tarsier. Genomics 18, 20-28.
21. Huisman, T.H.J., Schroeder, W.A., Keeling, M.E., Gengozian, N., Miller, A., Brodie, A.R., Shelton, J.R., Apell, G., 1973. Search for non-allelic structural genes for γ-chains of fetal hemoglobins in some primates. Biochem. Genet. 10, 309-318.
22. Jane, S.M., Gumucio, D.L., Ney, P.A., Cunningham, J.M., Nienhuis, A.W., 1993. Methylation-enhanced binding of Sp1 to the stage selector element of the human γ-globin gene promoter may regulate developmental specificity of expression. Mol. Cell. Biol. 13, 3272-3281.
23. Jane, S.M., Ney, P.A., Vanin, E.F., Gumucio, D.L., Nienhuis, A.W., 1992. Identification of a stage selector element in the human γ-globin promoter that fosters preferential interaction with the 5′ HS2 enhancer when in competition with the β-promoter. EMBO J. 11, 2961-2969.
24. Johnson, R.M., Buck, S., Chiu, C.-H., Schneider, H., Sampaio, I., Gage, D.A., Shen, T.-L., Schneider, M.P.C., Muniz, J.A., Gumucio, D.L., Goodman, M., 1996. Fetal globin expression in New World monkeys. J. Biol. Chem. 271, 14684-14691.
25. Koop, B.F., Siemieniak, D., Slightom, J.L., Goodman, M., Dunbar, J., Wright, P.C., Simons, E.L., 1989. Tarsius δ and β globin genes: conversions, evolution, and systematic implications. J. Biol. Chem. 264, 68-79.
26. Li, Q., Powers, P.A., Smithies, O., 1985. Nucleotide sequence of 16-kilobase pairs of DNA 5′ to the human ε-globin gene. J. Biol. Chem. 260, 14901-14910.
27. Margot, J.B., Demers, G.W., Hardison, R.C., 1989. Complete nucleotide sequences of the rabbit β-like globin gene cluster: Analysis of intergenic sequences and comparison with the human β-like globin gene cluster. J. Mol. Biol. 205, 15-40.
28. Martin, D.I.K., Fiering, S., Groudine, M., 1996. Regulation of β-globin gene expression: straightening out the locus. Curr. Opin. Gen. Dev. 6, 488-495.
29. Meireles, C.M.M., Schneider, M.P.C., Sampaio, M.I.C., Schneider, H., Slightom, J.L., Chiu, C.-H., Neiswanger, K., Gumucio, D.L., Czelusniak, J., Goodman, M., 1995. Fate of a redundant γ-globin gene in the atelid clade of New World monkeys: implications concerning fetal globin gene expression. Proc. Natl. Acad. Sci. USA 92, 2607-2611.
30. Myers, R.M., Tilly, K., Maniatis, T., 1986. Fine structure genetic analysis of a β-globin promoter. Science 232, 613-618.
31. Nute, P.E., Pataryas, H.A., Stamatoyannopoulos, G., 1973. The Gγ and Aγ hemoglobin chains during fetal development. Am. J. Hum. Genet. 25, 271-276.
32. Orkin, S.H., 1995. Regulation of globin gene expression in erythroid cells. FEBS Lett. 231, 271-281.
33. Perkins, A.C., Gaensler, K.M.L., Orkin, S.H., 1996. Silencing of human fetal globin expression is impaired in the absence of the adult β-globin gene activator protein EKLF. Proc. Natl. Acad. Sci. USA 93, 12267-12271.
34. Peschle, C., Mavilio, F., Care, A., Migliaccio, G., Migliaccio, A.G., Salvo, G., Samoggia, P., Petti, S., Guerriero, R., Marinucci, M., Lazzaro, D., Russo, G., Mastroberardino, G., 1985. Haemoglobin switching in human embryos: asynchrony of ζ→α and ε→γ-globin switches in primitive and definitive erythropoietic lineage. Nature 313, 235-238.
35. Peterson, K.R., Stamatoyannopoulos, G., 1993. Role of gene order in developmental control of human γ- and β-globin gene expression. Mol. Cell. Biol. 13, 4836-4843.
36. Rogan, P.K., Pan, J., Weissman, S.M., 1987. L1 repeat elements in the human ε-Gγ-globin gene intergenic region: Sequence analysis and concerted evolution within this family. Mol. Biol. Evol. 4, 327-342.
37. Rowe, N., 1996. The Pictorial Guide to the Living Primates. Pogonias Press, East Hampton, NY.
38. Schneider, H., Sampaio, I., Harada, M.L., Barroso, C.M., Schneider, M.P., Czelusniak, J., Goodman, M., 1996. Molecular phylogeny of the New World monkeys (Platyrrhini, Primates) based on two unlinked nuclear genes: IRBP intron 1 and ε-globin sequences. Am. J. Phys. Anthropol. 100, 153-179.
39. Shen, S., Slightom, J.L., Smithies, O., 1981. A history of the human fetal globin gene duplication. Cell 26, 191-203.
40. Slightom, J.L., Blechl, A.E., Smithies, O., 1980. Human fetal Gγ- and Aγ-globin genes: complete nucleotide sequence suggests that DNA can be exchanged between these duplicated genes. Cell 21, 627-668.
41. Slightom, J.L., Bock, J.H., Tagle, D.A., Gumucio, D.L., Goodman, M., Stojanovic, N., Jackson, J., Miller, W., Hardison, R., 1997. The complete sequences of the galago and rabbit β-globin Locus Control Regions: extended sequence and functional conservation outside the cores of Dnase hypersensitive sites. Genomics 39, 90-94.
42. Slightom, J.L., Koop, B.F., Xu, P., Goodman, M., 1988. Rhesus fetal globin genes: concerted evolution in the descent of higher primates. J. Biol. Chem. 263, 12427-12438.
43. Smit, A.F.A., Toth, C., Riggs, A.D., Jurka, J., 1995. Ancestral mammalian-wide subfamilies of LINE-1 repetitive sequences. J. Mol. Biol. 246, 401-417.
44. Swofford, D.L., 1993. PAUP: Phylogenetic Analysis Using Parsimony, 3.1.1. Illinois Natural History Survey, Champaign, IL.
45. Tagle, D.A., Koop, B.F., Goodman, M., Slightom, J.L., Hess, D.L., Jones, R.T., 1988. Embryonic ε and γ globin genes of a prosimian primate (Galago crassicaudatus). J. Mol. Biol. 203, 439-455.
46. Tagle, D.A., Stanhope, M.J., Siemieniak, D.R., Benson, P., Goodman, M., Slightom, J.L., 1992. The β-globin gene cluster of the prosimian primate Galago crassicaudatus: nucleotide sequence determination of the 41-kb cluster and comparative sequence analyses. Genomics 13, 741-760.
47. TomHon, C., Zhu, W., Millinoff, D., Hayasaka, K., Slightom, J.L., Goodman, M., Gumucio, D.L., 1997. Evolution of a fetal expression pattern via cis changes near the γ globin gene. J. Biol. Chem. 272, 14062-14066.