Cloning and gene mapping of the chromosome 13q14 region deleted in chronic lymphocytic leukemia

Genomics

Volumn 42, Issue 3, 1997, Pages 369-377

  Kalachikov, S ^a   Migliazza, A ^a,b   Cayanis, E ^a   Fracchiolla, N S ^a,b   Bonaldo, M F ^a,b   Lawton, L ^a,b   Jelenc, P ^a,b   Ye, X ^a   Qu, X ^a   Chien, M ^a   Hauptschein, R ^b   Gaidano, G ^c   Vitolo, U ^d   Saglio, G ^c   Resegotti, L ^d   Brodjansky, V ^e   Yankovsky, N ^e   Zhang, P ^a   Soares, M B ^a,b   Russo, J ^a   Edelman, I S ^a   Efstratiadis, A ^a,b   Dalla Favera, R ^a,b   Fischer, S G ^a   more..

^a The New York Presbyterian Hospital   (United States)

^b Università di Torino ^*  (United States)

^c UNIVERSITY OF TURIN   (Italy)

^d MOLINETTE HOSPITAL   (Italy)

^e VAVILOV INSTITUTE OF GENERAL GENETICS   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG;

ARTICLE; B LYMPHOCYTE; CHROMOSOME 13Q; CHROMOSOME DELETION 13; CHRONIC LYMPHATIC LEUKEMIA; COSMID; EXON; GENE ACTIVATION; GENE MAPPING; GENETIC ANALYSIS; GENETIC MARKER; HETEROZYGOSITY LOSS; HUMAN; HUMAN CELL; MOLECULAR CLONING; PRIORITY JOURNAL; TUMOR SUPPRESSOR GENE;

EID: 0031570685     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1997.4747     Document Type: Article

References (36)

1. Albertsen, H.A., Abderrahim, H., Cann, H., Dauset, J., Le Paslier, D., and Cohen, D. (1990). Construction and characterization of a yeast artificial chromosome library containing seven haploid human genome equivalents. Proc. Natl. Acad. Sci. USA 87: 4256-4260.
2. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990). Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
3. Bonaldo, M. F., Yu, M. T., Jelenc, P., Brown, S., Su, L., Lawton, L., Deaven, L., Efstratiadis, A., Warburton, D., and Scares, M. B. (1994). Selection of cDNAs using chromosome-specific genomic clones: Application to human chromosome 13. Hum. Mol. Genet. 3: 1663-1673.
4. Bonaldo, M. F., Lennon, G., and Scares, M. B. (1996). Normalization and subtraction: Two approaches to facilitate gene discovery. Genome Res. 6: 791-806.
5. Brodyanskii, V. M., Sulimova, G. E., Udina, I. G., Aitova, S. S., Shaikhaev, G. O., Sharikova, O. A., Zakharev, V. M., Fedorova, L. I., Zelenin, A. V., Eikhorn, S., Baush, C., Lalande, M., Ross, M., and Yankovskii, N. K. (1995). Screening of YAC clones and building a map of the chromosome 13 region often deleted during chronic B-cell lymphocytic leucosis. Mol. Biol. 29: 665-672.
6. Brown, A. G., Ross, F. M., Dunne, E. M., Steel, C. M., and Weir-Thompson, E. M. (1993). Evidence for a new tumour suppressor locus (DBM) in human B-cell neoplasia telomeric to the retinoblastoma gene. Nature Genet. 3: 67-72.
7. Bullrich, F., Veronese, M. L., Kitada, S., Jurlander, J., Caligiuri, M. A., Reed, J. C., and Croce, C. M. (1996). Minimal region of loss at 13q14 in B-cell chronic lymphocytic leukemia. Blood 88: 3109-3115.
8. Chapman, R. M., Corcoran, M. M., Gardiner, A., Hawtorn, L. A., Cowell, J. K., and Oscier, D. G. (1994). Frequent homozygous deletions of the D13S25 locus in chromosome region 13q14 defines the location of a gene critical in leukaemogenesis in chronic B-cell lymphocytic leukaemia. Oncogene 9: 1289-1293.
9. Cheson, B. D., Bennett, J. M., Grever, M., Kay, N., Keating, M. J., O'Brien, S., and Rai, K. R. (1996). National Cancer Institute-sponsored Working Group guidelines for chronic lymphocytic leukemia: Revised guidelines for diagnosis and treatment. Blood 87: 4990-4997.
10. Chirgwin, J. M., Przybyla, A. E., MacDonald, R. J., and Rutter, W. J. (1979). Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry 18: 5294-5299.
11. Deininger, P. L. (1983). Random subcloning of sonicated DNA: Application to shotgun DNA sequence analysis. Anal. Biochem. 129: 216-223.
12. Devilder, M. C., Francois, S., Bosic, C., Moreau, A., Mellerin, M. P., Le Paslier, D., Bataille, R., and Moisan, J. P. (1995). Deletion cartography around the D13S25 locus in B cell chronic lymphocytic leukemia and accurate mapping of the involved tumor suppressor gene. Cancer Res. 55: 1355-1357.
13. Dighiero, G., Travade, P., Chevret, S., Fenaux, P., Chastang, C., and Binet, J-L. (1991). B-cell chronic lymphocytic leukemia: Present status and future directions: French Cooperative Group on CLL. Blood 78: 1901-1914.
14. Fischer, S. G., Cayanis, E., Russo, J. J., Sunjevaric, I., Boukhgalter, B., Zhang, P., Yu, M. T., Rothstein, R., Warburton, D., Edelman, I. S., and Efstratiadis, A. (1994). Assembly of ordered contigs of cosmids selected with YACs of human chromosome 13. Genomics 21: 525-537.
15. Fischer, S. G., Cayanis, E., Bonaldo, M. D., Bowcock, A. M., Deaven, L. L., Edelman, I. S., Gallardo, T., Kalachikov, S., Lawton, L., Longmire, J. L., Lovett, M., Osborne-Lawrence, S., Rothstein, R., Russo, J. J., Scares, M. B., Sunjevaric, I., Venkatraj, V. S., Warburton, D., Zhang, P., and Efstratiadis, A. (1996). A high-resolution annotated physical map of the human chromosome 13q12-13 region containing the breast cancer susceptibility locus BRCA2. Proc. Natl. Acad. Sci. USA. 93: 690-694.
16. Foon, K. A., Rai, K. R., and Gale, R. P. (1990). Chronic lymphocytic leukemia: New insights into biology and therapy. Ann. Intern. Med. 113: 525-539.
17. Gaidano, G., Ballerini, P., Gong, J. Z., Inghirami, G., Neri, A., Newcomb, E. W., Magrath, I. T., Knowles, D. M., and Dalla-Favera, R. (1991). p53 mutations in human lymphoid malignancies: Association with Burkitt lymphoma and chronic lymphocytic leukemia. Proc. Natl. Acad. Sci. USA 88: 5413-5417.
18. Gaidano, G., Newcomb, E. W., Gong, J., Tassi, V., Neri, A., Cortelezzi, A., Calori, R., Baldini, L., and Dalla-Favera, R. (1994). Analysis of alterations of oncogenes and tumor suppressor genes in chronic lymphocytic leukemia. Am. J. Pathol. 144: 1312-1319.
19. Gamberi, B., Gaidano, G., Parsa, N., Carbone, A., Roncella, S., Knowles, D. M., Louie, D. C., Shibata, D., Chaganti, R. S. K., and Dalla-Favera, R. (1997). Microsatellite instability is rare in B-cell non-Hodgkin's lymphomas. Blood 89: 975-979.
20. Garcia-Marco, J. A., Price, C. M., Ellis, J., Morey, M., Matutes, E., Lens, D., Colman, S., and Catovsky, D. (1996). Correlation of trisomy 12 with proliferating cells by combined immunocytochemistry and fluorescence in situ hybridization in chronic lymphocytic leukemia. Leukemia 10: 1705-1711.
21. Gu, W., Cechova, K., Tassi, V., and Dalla-Favera, R. (1993). Opposite regulation of gene transcription and cell proliferation by c-Myc and Max. Proc. Natl. Acad. Sci. USA 90: 2935-2939.
22. Ioannou, P. A., Amemiya, C. T., Games, J., Kroisel, P. M., Shizuya, H., Chen, C., Batzer, M. A., and de Jong, P. J. (1994). A new bacteriophage P1-derived vector for the propagation of large human DNA fragments. Nature Genet. 6: 84-89.
23. Jabbar, S. A. B., Ganeshaguru, K., Wickremasinghe, R. G., and Hoffbrand, A. V. (1995). Deletion of chromosome 13 (band q14) but not trisomy 12 is a clonal event in B-chronic lymphocytic leukaemia (CLL). Br. J. Haematol. 90: 476-478.
24. Juliusson, G., and Gahrton, G. (1993). Cytogenetics in CLL and related disorders. Baillieres Clin. Haematol. 6: 821-848.
25. Juliusson, G., Oscier, D., Fitchett, M., Ross, F. M., Stockdill, G., Mackie, M. J., Parker, A. C., Castoldi, G. L., Cueno, A., Knuutila, S., Elonen, E., and Garthon, G. (1990). Prognostic subgroups in B-cell chronic lymphocytic leukemia defined by specific chromosomal abnormalities. N. Engl. J. Med. 323: 720-724.
26. Kawata, A., Han, T., Dadey, B., Weier, H-U. G., Okazaki, M., Yokota, S., Fukiage, T., Xiao, H., Block, A. W., Barcos, M., Henderson, E., Yoshida, M., and Seon, B. K. (1993). Establishment and characterization of the tumors of chronic lymphocytic leukemia cell line in nude and SCID mice. Leuk. Res. 17: 883-894.
27. Lalande, M., Donlon, T., Petersen, R. A., Liberfarb, R., Manter, S., and Latt, S. A. (1986). Molecular detection and differentiation of deletions in band 13q14 in human retinoblastoma. Cancer Genet. Cytogenet. 23: 151-157.
28. Larin, Z., Monaco, A. P., and Lehrach, H. (1991). Yeast artificial chromosome libraries containing large inserts from mouse and human DNA. Proc. Natl. Acad. Sci. USA 88: 4123-4127.
29. Liu, Y., Hermanson, M., Grandér, D., Merup, M., Wu, X., Heyman, M., Rasool, O., Juliusson, G., Gahrton, G., Detlofsson, R., Nikiforova, N., Buys, C., Söderhäll, S., Yankovsky, N., Zabarovsky, E., and Einhorn, S. (1995). 13q deletions in lymphoid malignancies. Blood 86: 1911-1915.
30. Matutes, E., Oscier, D., Garcia-Marco, J., Ellis, J., Copplestone, A., Gillingham, R., Hamblin, T., Lens, D., Swansbury, G. J., and Catowsky, D. (1996). Trisomy 12 defines a group of CLL with atypical morphology: Correlation between cytogenetic, clinical and laboratory features in 544 patients. Br. J. Haematol. 92: 382-388.
31. Miklos, G. L. G., and Rubin, G. M. (1996). The role of the genome project in determining gene function: Insights from model organisms. Cell 86: 521-529.
32. Miller, S. A., Dykes, D. D., and Polesky, H. F. (1988). A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res. 16: 1215.
33. Montserrat, E., Binet, J. L., Catowsky, D., Dighiero, G., Gale, R. P., Rai, K. R., and Rozman, C. (1992). 5th International Workshop on Chronic Lymphocytic Leukemia. Leuk. Res. 16: 717-720.
34. Schuler, G. D., Boguski, M. S., Stewart, E. A., Stein, L. D., Gyapay, G., Rice, K., White, R. E., Rodriguez-Tomé, P., Aggarwal, A., Bajorek, E., Bentolila, S., Birren, B. B., Butler, A., Castle, A. B., Chiannilkulchai, N., Chu, A., Glee, C., Cowles, S., Day, P. J. R., Dibling, T., Drouot, N., Dunham, I., Duprat, S., East, C., Edwards, C., Fan, J-B., Fang, N., Fizames, C., Garrett, C., Green, L., Hadley, D., Harris, M., Harrison, P., Brady, S., Hicks, A., Holloway, E., Hui, L., Hussain, S., Louis-Dit-Sully, C., Ma, J., MacGilvery, A., Mader, C., Maratukulam, A., Matise, T. C., McKusick, K. B., Morissette, J., Mungall, A., Muselet, D., Nusbaum, H. C., Page, D. C., Peck, A., Perkins, S., Piercy, M., Qin, F., Quackenbush, J., Ranby, S., Reif, T., Rozen, S., Sanders, C., She, X., Silva, J., Slonim, D. K., Soderlund, C., Sun, W-L., Tabar, P., Thangarajah, T., Vega-Czarny, N., Vollrath, D., Voyticky, S., Wilmer, T., Wu, X., Adams, M. D., Auffray, C., Walter, N. A. R., Brandon, R., Dehejia, A., Goodfellow, P. N., Houlgatte, R., Hudson, J. R., Jr., Ide, S. E., Iorio, K. R., Lee, W. Y., Seki, N., Nagase, T., Ishikawa, K., Nomura, N., Phillips, C., Polymeropoulos, M. H., Sandusky, M., Schmitt, K., Berry, R., Swanson, K., Torres, R., Venter, J. C., Sikela, J. M., Beckmann, J. S., Weissenbach, J., Myers, R. M., Cox, D. R., James, M. R., Bentley, D., Deloukas, P., Lander, E. S., and Hudson, T. J. (1996). A gene map of the human genome. Science 274: 540-546.
35. Ye, B. H., Rao, P. H., Chaganti, R. S., and Dalla-Favera, R. (1993). Cloning of bcl-6, the locus involved in chromosome translocations affecting band 3q27 in B-cell lymphoma. Cancer Res. 53: 2732-2735.
36. Zhang, P., Schon, E. A., Fischer, S. G., Cayanis, E., Weiss, J., Kistler, S., and Bourne, P. E. (1994). An algorithm based on graph theory for the assembly of contigs in physical mapping of DNA. Comput. Appl. Biosci. 10: 309-317.