메뉴 건너뛰기




Volumn 5, Issue 6, 1997, Pages 729-734

A biopolymer by any other name would bind as well: A comparison of the ligand-binding pockets of nucleic acids and proteins

Author keywords

[No Author keywords available]

Indexed keywords


EID: 0031570666     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0969-2126(97)00227-X     Document Type: Review
Times cited : (18)

References (29)
  • 1
    • 0025678737 scopus 로고
    • Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
    • Michel, F. & Westhof, E. (1990). Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J. Mol. Biol. 216, 585-610.
    • (1990) J. Mol. Biol. , vol.216 , pp. 585-610
    • Michel, F.1    Westhof, E.2
  • 2
    • 0026651395 scopus 로고
    • Conformation of the TAR RNA-arginine complex by NMR spectroscopy
    • Puglisi, J.D., Tan, R., Calnan, B.J., Frankel, A.D. & Williamson, J.R. (1992). Conformation of the TAR RNA-arginine complex by NMR spectroscopy. Science 257, 76-80.
    • (1992) Science , vol.257 , pp. 76-80
    • Puglisi, J.D.1    Tan, R.2    Calnan, B.J.3    Frankel, A.D.4    Williamson, J.R.5
  • 3
    • 0026589545 scopus 로고
    • Specific binding of arginine to TAR RNA
    • Tao, J. & Frankel, A.D. (1992). Specific binding of arginine to TAR RNA. Proc. Natl. Acad. Sci. USA 89, 2723-2726.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 2723-2726
    • Tao, J.1    Frankel, A.D.2
  • 4
    • 0031102380 scopus 로고    scopus 로고
    • Nucleic acid selection and the challenge of combinatorial chemistry
    • Osborne, S.E. & Ellington, A.D. (1997). Nucleic acid selection and the challenge of combinatorial chemistry. Chem. Rev. 97, 349-370.
    • (1997) Chem. Rev. , vol.97 , pp. 349-370
    • Osborne, S.E.1    Ellington, A.D.2
  • 6
    • 0028430587 scopus 로고
    • RNA selection. Aptamers achieve the desired recognition
    • Ellington, A.D. (1994). RNA selection. Aptamers achieve the desired recognition. Curr. Biol. 4, 427-429.
    • (1994) Curr. Biol. , vol.4 , pp. 427-429
    • Ellington, A.D.1
  • 7
    • 0029924638 scopus 로고    scopus 로고
    • RNA aptamers that bind L-arginine with sub-micromolar dissociation constants and high enantioselectivity
    • Geiger, A., Burgstaller, P., von der Eltz, H., Roeder, A. & Famulok, M. (1996). RNA aptamers that bind L-arginine with sub-micromolar dissociation constants and high enantioselectivity. Nucleic Acids Res. 24, 1029-1036.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 1029-1036
    • Geiger, A.1    Burgstaller, P.2    Von Der Eltz, H.3    Roeder, A.4    Famulok, M.5
  • 8
    • 0027995790 scopus 로고
    • Isolation of RNA aptamers for biological cofactors by in vitro selection
    • Burgstaller, P. & Famulok, M. (1994). Isolation of RNA aptamers for biological cofactors by in vitro selection. Angew. Chem. Int. Ed. Engl. 33, 1084-1087.
    • (1994) Angew. Chem. Int. Ed. Engl. , vol.33 , pp. 1084-1087
    • Burgstaller, P.1    Famulok, M.2
  • 9
    • 0027180473 scopus 로고
    • An RNA motif that binds ATP
    • Sassanfar, M. & Szostak, J.W. (1993). An RNA motif that binds ATP. Nature 364, 550-553.
    • (1993) Nature , vol.364 , pp. 550-553
    • Sassanfar, M.1    Szostak, J.W.2
  • 10
    • 0028224199 scopus 로고
    • High-resolution molecular discrimination by RNA
    • Jenison, R.D., Gill, S.C., Pardi, A. & Polisky, B. (1994). High-resolution molecular discrimination by RNA. Science 263, 1425-1429.
    • (1994) Science , vol.263 , pp. 1425-1429
    • Jenison, R.D.1    Gill, S.C.2    Pardi, A.3    Polisky, B.4
  • 11
  • 12
    • 0029902155 scopus 로고    scopus 로고
    • Aptly named aptamers display their aptitude
    • Williamson, J.R. (1996). Aptly named aptamers display their aptitude. Nature 382, 112-113.
    • (1996) Nature , vol.382 , pp. 112-113
    • Williamson, J.R.1
  • 13
    • 0029959406 scopus 로고    scopus 로고
    • Selecting apt RNAs for NMR
    • Cech, T.R. & Szewczak, A.A. (1996). Selecting apt RNAs for NMR. RNA 2, 625-627.
    • (1996) RNA , vol.2 , pp. 625-627
    • Cech, T.R.1    Szewczak, A.A.2
  • 14
    • 0029864853 scopus 로고    scopus 로고
    • Molecular recognition in the FMN-RNA aptamer complex
    • Fan, P., Suri, A.K., Fiala, R., Live, D. & Patel, D.J. (1996). Molecular recognition in the FMN-RNA aptamer complex. J. Mol. Biol. 258, 480-500.
    • (1996) J. Mol. Biol. , vol.258 , pp. 480-500
    • Fan, P.1    Suri, A.K.2    Fiala, R.3    Live, D.4    Patel, D.J.5
  • 15
    • 0029946537 scopus 로고    scopus 로고
    • Structural basis of RNA folding and recognition in an AMP-RNA aptamer complex
    • Jiang, F., Kumar, R.A., Jones, R.A. & Patel, D.J. (1996). Structural basis of RNA folding and recognition in an AMP-RNA aptamer complex. Nature 382, 183-186.
    • (1996) Nature , vol.382 , pp. 183-186
    • Jiang, F.1    Kumar, R.A.2    Jones, R.A.3    Patel, D.J.4
  • 16
    • 0029972909 scopus 로고    scopus 로고
    • Structural basis of ligand discrimination by two related RNA aptamers resolved by NMR spectroscopy
    • Yang, Y., Kochoyan, M., Burgstaller, P., Westhof, E. & Famulok, M. (1996). Structural basis of ligand discrimination by two related RNA aptamers resolved by NMR spectroscopy. Science 272, 1343-1347.
    • (1996) Science , vol.272 , pp. 1343-1347
    • Yang, Y.1    Kochoyan, M.2    Burgstaller, P.3    Westhof, E.4    Famulok, M.5
  • 17
    • 0025123541 scopus 로고
    • Hydrogen-1, carbon-13, and nitrogen-15 NMR spectroscopy of Anabaena 7120 flavodoxin: Assignment of beta-sheet and flavin binding site resonances and analysis of protein-flavin interactions
    • Stockman, B.J., Krezel, A.M., Markley, J.L., Leonhardt, K.G. & Straus, N.A. (1990). Hydrogen-1, carbon-13, and nitrogen-15 NMR spectroscopy of Anabaena 7120 flavodoxin: assignment of beta-sheet and flavin binding site resonances and analysis of protein-flavin interactions. Biochemistry 29, 9600-9609.
    • (1990) Biochemistry , vol.29 , pp. 9600-9609
    • Stockman, B.J.1    Krezel, A.M.2    Markley, J.L.3    Leonhardt, K.G.4    Straus, N.A.5
  • 18
    • 0026326962 scopus 로고
    • Structural basis for the activation of glycogen phosphorylase b by adenosine monophosphate
    • Sprang, S.R., Withers, S.G., Goldsmith, E.J., Fletterick, R.J. & Madsen, N.B. (1991). Structural basis for the activation of glycogen phosphorylase b by adenosine monophosphate. Science 254, 1367-1371.
    • (1991) Science , vol.254 , pp. 1367-1371
    • Sprang, S.R.1    Withers, S.G.2    Goldsmith, E.J.3    Fletterick, R.J.4    Madsen, N.B.5
  • 19
    • 0016345760 scopus 로고
    • Chemical and biological evolution of a nucleotide-binding protein
    • Rossmann, M.G., Moras, D. & Olsen, K.W. (1974). Chemical and biological evolution of a nucleotide-binding protein. Nature 250, 194-199.
    • (1974) Nature , vol.250 , pp. 194-199
    • Rossmann, M.G.1    Moras, D.2    Olsen, K.W.3
  • 20
    • 1542563485 scopus 로고
    • Evolutionary and structural relationships among dehydrogenases
    • (Boyer, P.D., ed) Academic Press, New York, USA
    • Rossmann, M.G., Liljas, A., Brändén, C.I. & Banaszak, L.J. (1975). Evolutionary and structural relationships among dehydrogenases. In The Enzymes Vol. 11A. (Boyer, P.D., ed) pp. 61-102. Academic Press, New York, USA.
    • (1975) The Enzymes , vol.11 A , pp. 61-102
    • Rossmann, M.G.1    Liljas, A.2    Brändén, C.I.3    Banaszak, L.J.4
  • 21
    • 0016354103 scopus 로고
    • Topological comparison of adenyl kinase with other proteins
    • Schulz, G.E. & Schirmer, R.H. (1974). Topological comparison of adenyl kinase with other proteins. Nature 250, 142-144.
    • (1974) Nature , vol.250 , pp. 142-144
    • Schulz, G.E.1    Schirmer, R.H.2
  • 22
    • 0025158208 scopus 로고
    • Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs
    • Eriani, G., Delarue, M., Poch, O., Gangloff, J. & Moras, D. (1990). Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs. Nature 347, 203-206.
    • (1990) Nature , vol.347 , pp. 203-206
    • Eriani, G.1    Delarue, M.2    Poch, O.3    Gangloff, J.4    Moras, D.5
  • 23
    • 0017158856 scopus 로고
    • Structure of glycogen phosphorylase a at 3.0Å resolution and its ligand binding sites at 6Å
    • Fletterick, R.J., Sygusch, J., Semple, H. & Madsen, N.B. (1976). Structure of glycogen phosphorylase a at 3.0Å resolution and its ligand binding sites at 6Å. J. Biol. Chem. 251, 6142-6146.
    • (1976) J. Biol. Chem. , vol.251 , pp. 6142-6146
    • Fletterick, R.J.1    Sygusch, J.2    Semple, H.3    Madsen, N.B.4
  • 24
    • 0017860747 scopus 로고
    • Crystallographic studies on the activity of glycogen phosphorylase b
    • Weber, I.T., et al., & Jenkins, J.A. (1978). Crystallographic studies on the activity of glycogen phosphorylase b. Nature 274, 433-437.
    • (1978) Nature , vol.274 , pp. 433-437
    • Weber, I.T.1    Jenkins, J.A.2
  • 26
    • 0029670095 scopus 로고    scopus 로고
    • Structure of the oligomerization and L-arginine binding domain of the arginine repressor of Escherichia coli
    • Van Duyne, G.D., Ghosh, G., Maas, W.K. & Sigler, P.B. (1996). Structure of the oligomerization and L-arginine binding domain of the arginine repressor of Escherichia coli. J. Mol. Biol. 256, 377-391.
    • (1996) J. Mol. Biol. , vol.256 , pp. 377-391
    • Van Duyne, G.D.1    Ghosh, G.2    Maas, W.K.3    Sigler, P.B.4
  • 27
    • 23444436172 scopus 로고
    • Protein design by binary patterning of polar and nonpolar amino acids
    • Kamtekar, S., Schiffer, J.M., Xiong, H., Babik, J.M. & Hecht, M.H. (1993). Protein design by binary patterning of polar and nonpolar amino acids. Science 262, 1680-1685.
    • (1993) Science , vol.262 , pp. 1680-1685
    • Kamtekar, S.1    Schiffer, J.M.2    Xiong, H.3    Babik, J.M.4    Hecht, M.H.5
  • 28
    • 0028426892 scopus 로고
    • An RNA pocket for an aliphatic hydrophobe
    • Majerfeld, I. & Yarus, M. (1994). An RNA pocket for an aliphatic hydrophobe. Nat. Struct. Biol. 1, 287-292.
    • (1994) Nat. Struct. Biol. , vol.1 , pp. 287-292
    • Majerfeld, I.1    Yarus, M.2
  • 29
    • 0026423027 scopus 로고
    • Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops
    • Heus, H.A. & Pardi, A. (1991). Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops. Science 253, 191-194.
    • (1991) Science , vol.253 , pp. 191-194
    • Heus, H.A.1    Pardi, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.