Modulation of Cm/T, G/A, and G/T triplex stability by conjugate groups in the presence and absence of KCl

Biochemistry

Volumn 36, Issue 48, 1997, Pages 14816-14826

  Gamper Jr , Howard B ^a   Kutyavin, Igor V ^a   Rhinehart, Rebecca L ^a   Lokhov, Sergei G ^b   Reed, Michael W ^a   Meyer, Rich B ^a  

^a Nanogen Inc USA   (United States)

^b INSTITUTE OF CHEMICAL BIOLOGY AND FUNDAMENTAL MEDICINE   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; CORALYNE; GUANINE; NUCLEOTIDE; POTASSIUM CHLORIDE; PURINE; PYRIMIDINE; THYMIDINE; DNA; HLA DQ ANTIGEN; HLA DQB1 ANTIGEN; OLIGODEOXYRIBONUCLEOTIDE; TRIPLEX DNA;

ALLELE; ARTICLE; GEL MOBILITY SHIFT ASSAY; MOLECULAR RECOGNITION; NUCLEOTIDE METABOLISM; PRIORITY JOURNAL; PROTEIN STABILITY; PURINE SYNTHESIS; PYRIMIDINE SYNTHESIS; CHEMISTRY; CONFORMATION; DNA BASE COMPOSITION; DNA DENATURATION; DRUG EFFECT; GENETICS; HUMAN; NUCLEIC ACID HYBRIDIZATION;

BASE COMPOSITION; DNA; HLA-DQ ANTIGENS; HUMANS; NUCLEIC ACID CONFORMATION; NUCLEIC ACID DENATURATION; NUCLEIC ACID HYBRIDIZATION; OLIGODEOXYRIBONUCLEOTIDES; POTASSIUM CHLORIDE;

EID: 0031549903     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi971339+     Document Type: Article

References (72)

1. Alberts, B. (1989) Molecular Biology of the Cell, p 304, Garland, New York.
2. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., & Struhl, K. (1989) in Current protocols in molecular biology, John Wiley, New York.
3. Beal, P. A., & Dervan, P. B. (1991) Science 251, 1360-1363.
4. Boutorine, A. S., Boiziau, C., Le Doan, T., Toulme, J. J., & Helene, C. (1992) Biochimie 74, 485-489.
5. Cantor, C. R., Warshaw, M. M., & Shapiro, H. (1970) Biopolymers 9, 1059-1077.
6. Cassidy, S. A., Strekowski, L., & Fox, K. R. (1996) Nucleic Acids Res. 24, 4133-4138.
7. Chandler, S. P., Strekowski, L., Wilson, W. D., & Fox, K. R. (1995) Biochemistry 34, 7234-7242.
8. Cooney, M., Czernuszewicz, G., Postel, E. H., Flint, S. J., & Hogan M. E. (1988) Science 241, 456-459.
9. Durland, R. H., Kessler, D. J., Gunnell, S., Duvic, M., Pettitt, B. M., & Hogan, M. E. (1991) Biochemistry 30, 9246-9255.
10. Duval-Valentin, G., Thuong, N. T., & Helene, C. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 504-508.
11. Escude, C., Francois, J.-C., Sun, J.-S., Ott, G., Sprinzl, M., Garestier, T., & Helene, C. (1993) Nucleic Acids Res. 21, 5547-5553.
12. Escude, C., Nguyen, C. H., Mergny, J.-L., Sun, J. S., Bisagni, E., Garestier, T., & Helene, C. (1995) J. Am. Chem. Soc. 117, 10212-10219.
13. Escude, C., Sun, J.-S., Nguyen, C. H., Bisagni, E., Garestier, T., & Helene, C. (1996) Biochemistry 35, 5735-5740.
14. Faucon, B., Mergny, J.-L., & Helene, C. (1996) Nucleic Acids Res. 24, 3181-3188.
15. Fox, K. R., Polucci, P., Jenkins, T. C., & Neidle, S. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 7887-7891.
16. Fried, M., & Crothers, D. M. (1981) Nucleic Acids Res. 9, 6505-6525.
17. Gamper, H. B., Reed, M. W., Cox, T., Virosco, J. S., Adams, A. D., Gall, A. A., Scholler, J. K., & Meyer, R. B. (1993) Nucleic Acids Res. 21, 145-150.
18. Giovannangeli, C., Rougee, M., Garestier, T., Thuong, N. T., & Helene, C. (1992a) Proc. Natl. Acad. Sci. U.S.A. 89, 8631-8635.
19. Giovannangeli, C., Thuong, N. T., & Helene, C. (1992b) Nucleic Acids Res. 20, 4275-4281.
20. Giovannangeli, C., Perrouault, L., Escude, C., Thuong, N., & Helene, C. (1996) Biochemistry 35, 10539-10548.
21. Havre, P. A., & Glazer, P. M. (1993) J. Virol. 67, 7324-7331.
22. Howard, F. B., Miles, H. T., & Ross, P. D. (1995) Biochemistry 34, 7135-7144.
23. Ing, N. H., Beekman, J. M., Kessler, D. J., Murphy, M., Jayaraman, K., Zendegui, J. G., Hogan, M. E., O'Malley, B. W., & Tsai, M.-J. (1993) Nucleic Acids Res. 21, 2789-2796.
24. Kohwi, Y., & Kohwi-Shigematsu, T. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 3781-3785.
25. Krieg, A. M., Tonkinson, J., Matson, S., Zhao, Q., Saxon, M., Zhang, L.-M., Bhanja, U., Yakubov, L., & Stein, C. A. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 1048-1052.
26. Kumar, A. (1993) Nucleosides Nucleotides 12, 729-736.
27. Kutyavin, I. V., Gamper, H. B., Gall, A. A., & Meyer, R. B. (1993) J. Am. Chem. Soc. 115, 9303-9304.
28. Lampe, J. N., Kutyavin, I. V., Rhinehart, R., Reed, M. W., Meyer, R. B., Gamper, H. B. (1997) Nucleic Acids Res. (in press).
29. Laughton, C. A., & Neidle, S. (1992) Nucleic Acids Res. 20, 6535-6541.
30. Lee, J. S., Woodsworth, M. L., Latimer, L. J., & Morgan, A. R. (1984) Nucleic Acids Res. 12, 6603-6614.
31. Lee, J. S., Latimer, L. J. P., & Hampel, K. J. (1993) Biochemistry 32, 5591-5597.
32. Maher, L. J., Dervan, P. B., & Wold, B. J. (1990) Biochemistry 29, 8820-8826.
33. Marchand, C., Bailly, C., Nguyen, C. H., Bisagni, E., Garestier, T., Helene, C., & Waring, M. J. (1996) Biochemistry 35, 5022-5032.
34. Mergny, J.-L., Duval-Valentin, G., Nguyen, C. H., Perrouault, L., Faucon, B., Rougee, M., Montenay-Garestier, T., Bisagni, E., & Helene, C. (1992) Science 256, 1681-1684.
35. Mergny, J.-L., Lacroix, L., Han, X., Leroy, J.-L., & Helene, C. (1995) J. Am. Chem. Soc. 117, 8887-8898.
36. Moraru-Allen, A. A., Cassidy, S., Alvarez, J.-L. A., Fox, K. R., Brown, T., & Lane, A. N. (1997) Nucleic Acids Res. 25, 1890-1896.
37. Moser, H. E., & Dervan, P. B. (1987) Science 238, 645-650.
38. Mouscadet, J.-F., Ketterle, C., Goulaouic, H., Carteau, S., Subra, F., Le Bret, M., & Auclair, C. (1994) Biochemistry 33, 4187-4196.
39. Nepom, G. T., & Erlich, H. (1991) Annu. Rev. Immunol. 9, 493-525.
40. Noonberg, S. B., Francois, J.-C, Garestier, T., & Helene, C. (1995a) Nucleic Acids Res. 23, 1956-1963.
41. Noonberg, S. B., Francois, J.-C., Praseuth, D., Guieysse-Peugeot, A.-L., Lacoste, J., Garestier, T., & Helene, C. (1995b) Nucleic Acids Res. 23, 4042-4049.
42. Oberhauser, B., & Wagner, E. (1992) Nucleic Acids Res. 20, 533-538.
43. Olivas, W. M., & Maher, L. J. (1995) Biochemistry 34, 278-384.
44. Orson, F. M., Kinsey, B. M., & McShan, W. M. (1994) Nucleic Acids Res. 22, 479-484.
45. Pilch, D. S., Levenson, C., & Shafer, R. H. (1991) Biochemistry 30, 6081-6087.
46. Pilch, D. S., Martin, M. T., Nguyen, C. H., Sun, J. S., Bisagni, E., Garestier, T., & Helene, C. (1993) J. Am. Chem. Soc. 115, 9942-9951.
47. Plum, G. E., Pilch, D. S., Singleton, S. F., & Breslauer, K. J. (1995) Annu. Rev. Biophys. Biomol. Struct. 24, 319-350.
48. Porumb, H., Gousset, H., Letellier, R., Salle, V., Briane, D., Vassy, J., Amor-Gueret, M., Israel, L., & Taillandier, E. (1996) Cancer Res. 56, 515-522.
49. Povsic, T. J., & Dervan, P. B. (1989) J. Am. Chem. Soc. 111, 3059-3061.
50. Radhakrishnan, I., & Patel, D. J. (1994) Biochemistry 33, 11405-11416.
51. Reed, M. W., Lukhtanov, E. A., Gorn, V. V., Lucas, D. D., Zhou, J. H., Pai, S. B., Cheng, Y.-c., & Meyer, R. B. (1995) J. Med. Chem. 38, 4587-4596.
52. Rippe, K., Fritsch, V., Westhof, E., & Jovin, T. M. (1992) EMBO J. 11, 3777-3786.
53. Roy, C. (1994) Eur. J. Biochem. 220, 493-503.
54. Sandor, Z., & Bredberg, A. (1994) Nucleic Acids Res. 22, 2051-2056.
55. Scaria, P. V., & Shafer, R. H. (1996) Biochemistry 35, 10985-10994.
56. Scaria, P. V., Shire, S. J., & Shafer, R. H. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 10336-10340.
57. Singleton, S. F., & Dervan, P. B. (1993) Biochemistry 32, 13171-13179.
58. Sun, J. S., Francois, J.-C., Montenay-Garestier, T., Saison-Behmoaras, T., Roig, V., Thuong, N. T., & Helene, C. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 9198-9202.
59. Sun, J. S., De Bizemont, T., Duval-Valentin, G., Montenay-Garestier, T., & Helene, C. (1991) CR Acad. Sci. III 313, 585-590.
60. Sun, J. S., Garestier, T., & Helene, C. (1996) Curr. Opin. Struct. Biol. 6, 327-333.
61. Svinarchuk, F., Bertrand, J.-R., & Malvy, C. (1994) Nucleic Acids Res. 22, 3742-3747.
62. Svinarchuk, F., Monnot, M., Merle, A., Malvy, C., & Fermandjian, S. (1995a) Nucleic Acids Res. 23, 3831-3836.
63. Svinarchuk, F., Paoletti, J., & Malvy, C. (1995b) J. Biol. Chem. 270, 14068-14071.
64. Svinarchuk, F., Debin, A., Bertrand, J.-R., & Malvy, C. (1996) Nucleic Acids Res. 24, 295-302.
65. Takasugi, M., Guendouz, A., Chassignol, M., Decout, J. L., Lhomme, J., Thuong, N. T., & Helene, C. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 5602-5606.
66. Thuong, N. T., & Helene, C. (1993) Angew. Chem., Int. Ed. Engl. 32, 666-690.
67. Trapane, T. L., Hogrefe, R. I., Reynolds, M. A., Kan, L. S., & Ts'o, P. O. P. (1996) Biochemistry 35, 5495-5508.
68. Vasquez, K. M., Wensel, T. G., Hogan, M. E., & Wilson, J. H. (1995) Biochemistry 34, 7243-7251.
69. Vu, H., Hill, T. S., & Jayaraman, K. (1994) Bioconjugate Chem. 5, 666-668.
70. Wang, G., Levy, D. D., Seidman, M. M., & Glazer, P. M. (1995) Mol. Cell. Biol. 15, 1759-1768.
71. Wilson, W. D., Tanious, F. A., Mizan, S., Yao, S., Kiselyov, A. S., Zon, G., & Strekowski, L. (1993) Biochemistry 32, 10614-10621.
72. Young, S. L., Krawczyk, S. H., Matteucci, M. D., & Toole, J. J. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 10023-10026.