Trinucleotide repeats in yeast

Research in Microbiology

Volumn 148, Issue 9, 1997, Pages 731-744

  Richard, G F ^a,b   Dujon, B ^a  

^a INSTITUT PASTEUR   (France)

^b BRANDEIS UNIVERSITY   (United States)

Author keywords

Gene duplication; Genome analysis; Repeats; Trinucleotide; Yeast

Indexed keywords

AMINO ACID; NUCLEAR PROTEIN; REPETITIVE DNA; TRINUCLEOTIDE;

ARTICLE; CONTROLLED STUDY; GENE DUPLICATION; MOLECULAR GENETICS; NONHUMAN; PRIORITY JOURNAL; TRINUCLEOTIDE REPEAT; YEAST;

EID: 0031456250     PISSN: 09232508     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0923-2508(97)82449-7     Document Type: Article

References (30)

1. Arnold, J., Cuticchia, A.J., Newsome, D.A., Jennings, W.W.D. & Ivarie, R. (1988), Mono-through hexanucleotide composition of the sense strand of yeast DNA: a Markov chain analysis. Nucleic Acids Res., 16, 7145-7158.
2. Benson, G. & Waterman, M.S. (1994), A method for fast database search for all k-nucleotide repeats. Nucleic Acids Res., 22, 4828-4836.
3. Bernardi, G. (1993), The vertebrate genome: isochores and evolution. Mol. Biol. Evol., 10, 186-204.
4. Britten, R.J. & Kohne, D.E. (1968), Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms. Science, 161, 529-540.
5. Burge, C., Campbell, A.M. & Karlin, S. (1992), Over-and under-representation of short oligonucleotides in DNA sequences. Proc. Natl. Acad. Sci. USA, 89, 1358-1362.
6. Charlesworth, B., Sniegowski, P. & Stephan, W. (1994), The evolutionary dynamics of repetitive DNA in eukaryotes. Nature (Lond.), 371, 215-220.
7. Deininger, P.L. (1989), in "Mobile DNA" (D.E. Berg and M.M. Howe) (pp. 619-636). American Society for Microbiology.
8. Dib, C., Faure, S., Fizames, C., Samson, D., Drouot, N., Vignal, A., Millasseau, P., Marc, S., Hazan, J., Seboun, E., Lathrop, M., Gyapay, G., Morissette, J. & Weissenbach, J. (1996), A comprehensive genetic map of the human genome based on 5,264 sequences. Nature (Lond.), 380, 152-154.
9. Dujon, B. (1996), The yeast genome project: what did we learn? TIG, 12, 263-270.
10. Dujon, B., Alexandraki, D., André, B., Ansorge, W., Baladron, V., Ballesta, J.P.G. et al. (1994), Complete DNA sequence of yeast chromosome XI. Nature (Lond.), 369, 371-378.
11. Galisson, F. & Dujon, B. (1996), Sequence and analysis of a 33-kb fragment from chromosome XV of the yeast Saccharomyces cerevisiae. Yeast, 12, 977-985.
12. Goffeau, A., Barrell, B.G., Bussey, H., Davis, R.W., Dujon, B., Feldman, H., Galibert, F., Hoheisel, J.D., Jacq, C., Johnston, M., Louis, E.J., Mewes, H.W., Murakami, Y., Philippsen, P., Tettelin, H. & Oliver, S.G. (1996), Life with 6000 genes. Science, 274, 546-567.
13. Green, H. & Wang, N. (1994), Codon reiteration and the evolution of proteins. Proc. Natl. Acad. Sci. USA, 91, 4298-4302.
14. Hutchinson III, C.A., (1989), in "Mobile DNA" (D.E. Berg and M.M. Howe) (pp. 593-617) American Society for Microbiology.
15. Jaworski, A., Rosche, W.A., Gellibolian, R., Kang, S., Shimizu, M., Bowater, R.P., Sinden, R.R. & Wells, R.D. (1995), Mismatch repair in Escherichia coli enhances instability of (CTG)n triplet repeats from human hereditary diseases. Proc. Natl. Acad. Sci. USA, 92, 11019-11023.
16. Kalogeropoulos, A. (1993), Linguistic analysis of chromosome III DNA sequence of Saccharomyces cerevisiae. Yeast, 9, 889-905.
17. Karlin, S., Blaisdell, B.E., Sapolsky, R.J., Cardon, L. & Burge, C. (1993), Assessments of DNA inhomogeneities in yeast chromosome III. Nucleic Acids Res., 21, 703-711.
18. McDonald, J.F. (1993), Evolution and consequences of transposable elements. Curr. Opin. Genet. Dev., 3, 855-864.
19. Oliver, S.G., van der Aart, Q.J.M., Agostini-Carbone, M.L., Aigle, M., Alberghina, L., Alexandraki, D. et al. (1992), The complete DNA sequence of yeast chromosome III. Nature (Lond.), 357, 38-46.
20. Ollivier, E., Delorme, M.-O. & Hénaut, A. (1995), DosDNA occurs along yeast chromosomes, regardless of functional significance of the sequence. C.R. Acad. Sci. Paris, 318, 599-608.
21. Richard, G.-F. & Dujon, B. (1996), Distribution and variability of trinucleotide repeats in the genome of the yeast Saccharomyces cerevisiae. Gene, 174, 165-174.
22. Sharp, P.M. & Lloyd, A.T. (1993), Regional base composition variation along yeast chromosome III: evolution of chromosome primary structure. Nucleic Acids Res., 21, 179-183.
23. Singer, M. and Berg, P. (1991), Genes and genomes. University Science Books, Mill Valley, CA.
24. Stallings, R.L. (1994), Distribution of trinucleotide micro-satellites in different categories of mammalian genomic sequence: implications for human genetic diseases. Genomics, 21, 116-121.
25. Strand, M., Prolla, T.A., Liskay, R.M. and Petes, T.D. (1993), Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair. Nature (Lond.), 365, 274-276.
26. Thompson, J.D., Higgins, D.G. & Gibson, T.J. (1994), CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
27. Warren, S.T. (1996), The expanding world of trinucleotide repeats. Science, 271, 1374-1375.
28. Weiller, G., Schueller, C.M. & Schweyen, R.J. (1989), Putative target sites for mobile G+C rich clusters in yeast mitochondrial DNA: single elements and tandem arrays. Mol. Gen. Genet., 218, 272-283.
29. Yagil, G. (1994), The frequency of oligopurine-oligopyrimidine and other two-base tracts in yeast chromosome III. Yeast, 10, 603-611.
30. Yin, S., Heckman, J. & RajBhandary, U.L. (1981), Highly conserved GC-rich palindromic DNA sequences flank tRNA genes in Neurospora crassa mitochondria. Cell, 26, 325-332.