Sequence and analysis of a 33 kb fragment from the right arm of chromosome XV of the yeast Saccharomyces cerevisiae

Yeast

Volumn 12, Issue 9, 1996, Pages 877-885

  Galisson, Frédérique ^a   Dujon, Bernard ^a  

^a INSTITUT PASTEUR   (France)

Author keywords

CDC44; Chromosome sequencing; Chromosome XV; MGM1; MIP1; RPB8; Saccharomyces cerevisiae; STE13; STE4

Indexed keywords

ARTICLE; CHROMOSOME 15; CONTROLLED STUDY; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BASE SEQUENCE; CHROMOSOMES, FUNGAL; CONSENSUS SEQUENCE; COSMIDS; DNA, FUNGAL; FUNGAL PROTEINS; GENES, FUNGAL; GTP-BINDING PROTEINS; MITOCHONDRIAL PROTEINS; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

MYXOCOCCUS XANTHUS; PROKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 0030037583     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0061(199607)12:9<877::AID-YEA969>3.0.CO;2-S     Document Type: Article

References (31)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. and Lipman, D. J. (1990). Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
2. Anna-Arriola, S. S. and Herskowitz, I. (1994). Isolation and DNA sequence of the STE13 gene encoding dipeptidyl aminopeptidase. Yeast 10, 801-810.
3. Bairoch, A. (1993). The PROSITE dictionary of sites and patterns in proteins, its current status. Nucl. Acids Res. 21, 3097-3103.
4. Bennetzen, J. L. and Hall, B. D. (1982). Codon selection in yeast. J. Biol. Chem. 257, 3026-3031.
5. Beynon, J., Ally, A., Cannon, M., et al. (1987). Comparative organisation of nitrogen-specific genes from Azotobacter vinelandii and Klebsiella pneumoniae: DNA sequence of the nifUSV genes. J. Bacteriol. 169, 4024-4029.
6. Brigati, C., Kurtz, S., Balderes, D., Vidali, G. and Shore, D. (1993). An essential yeast gene encoding a TTAGGG repeat-binding protein. Mol. Cell. Biol. 13, 1306-1314.
7. Bussey, et al. (1995). The nucleotide sequence of chromosome I from Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 92, 3809-3813.
8. Dujon, B. (1992). Altogether now - sequencing the yeast genome. Curr. Biol. 2, 279-281.
9. Dujon, B., et al. (1994). The complete DNA sequence of chromosome XI of Saccharomvces cerevisiae (666 kb). Nature 369, 371-378.
10. Feldmann, H., et al. (1994). Complete DNA sequence of yeast chromosome II. EMBO J. 13, 5795-5809.
11. Fondrat, C. and Kalogeropoulos, A. (1994). Approaching the function of new genes by detection of their potential upstream activation sequences in Saccharomyces cerevisiae: application to chromosome III. Curr. Genet. 25, 396-406.
12. Howell, E. A., McAlear, M. A., Rose, D. M. and Holm, C. (1994). CDC44: a putative nucleotide binding protein required for cell cycle progression that has homology to subunits of replication factor C. Mol. Cell. Biol. 14, 255-267.
13. Johnston, M., et al. (1994). Complete nucleotide sequence of Saccharomvces cerevisiae chromosome VIII. Science 265, 2077-2082.
14. Jones, B. A. and Fangman, W. L. (1992). Mitochondrial DNA maintenance in yeast requires a protein containing a region related to the GTP-binding domain of dynamin. Genes Dev. 6, 380-389.
15. Kalogeropoulos, A. (1995). Automated intron detection in nuclear DNA sequences of Saccharomyces cerevisiae. Yeast 11, 555-565.
16. Marck, C. (1988). 'DNA Strider': a 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers. Nucl. Acids Res. 16, 1829-1836.
17. Murakami, et al. (1995). Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae. Nature Genetics 10, 261-268.
18. Oliver, S. G., et al. (1992). The complete DNA sequence of yeast chromosome III. Nature 357, 38-46.
19. Ouzounis, C., Bork, P. and Sander, C. (1994). The modular structure of the NIfU proteins. Trends Biochem. Sci. 19, 199-200.
20. Pearson, W. R. and Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85, 2444-2448.
21. Pearson, W. R. (1994). Using the FASTA program to search protein and DNA sequence databases. Methods Mol. Biol. 24, 307-331.
22. Rymond, B. C. and Rosbash, M. (1992). The Molecular Biology of the Yeast Saccharomyces cerevisiae. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, pp. 143-192.
23. Schimmel, P. (1991). Classes of aminoacyl-tRNA synthetases and the establishment of the genetic code. Trends Biochem. Sci. 16, 1-3.
24. Sharp, P. M. and Li, W. H. (1987). The codon adaptation index, a measure of directional synonymous codon usage bias, and its potential applications. Nucl. Acids Res. 15, 1281-1295.
25. Staden, R. (1994). The Staden package. In Griffin, A. M. and Griffin, H. G. (Eds), Methods in Molecular Biology, vol. 25. Humana Press, Inc., Totawa, NJ, pp. 9-170.
26. Thierry, A., Gaillon, L., Galibert, F. and Dujon, B. (1995). Construction of a complete library of Saccharomyces cerevisiae and physical mapping of chromosome XI at 3.7 kb resolution. Yeast 11, 121-135.
27. Vassarotti, A. and Goffeau, A. (1992). Sequencing the yeast genome: The European effort. Trends in Biotech. 10, 15-18.
28. Voss, H., Wiemann, S., Gothues, D., et al. (1993). Automated low-redundant large-scale DNA sequencing. BioTechniques 15, 714-721.
29. Welch, M. D., Vinh, D. B., Okamura, H. H. and Drubin, D. G. (1993). Screens for extragenic mutations that fail to complement act1 alleles identify genes that are important for actin function in Saccharomyces cerevisiae. Genetics 135, 265-274.
30. Whiteway, M., Hougan, L., Dignard, D., et al. (1989). The STE4 and STE18 genes of yeast encode potential β and γ subunits of the mating factor receptor-coupled G protein. Cell 56, 467-477.
31. Woychick, N. A., Liao, S.-M., Kolodsiej, P. A. and Young, R. A. (1990). Subunits shared by eucaryotic RNA polymerases. Genes Dev. 4, 313-323.