How Escherichia coli can bias the results of molecular cloning: Preferential selection of defective genomes of hepatitis C virus during the cloning procedure

Proceedings of the National Academy of Sciences of the United States of America

Volumn 94, Issue 25, 1997, Pages 13909-13914

  Forns, Xavier ^a   Bukh, Jens ^a   Purcell, Robert H ^a   Emerson, Suzanne U ^a,b  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

^b NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

STRUCTURAL PROTEIN;

ARTICLE; CODON; CONTROLLED STUDY; ESCHERICHIA COLI; GENE MUTATION; GENETIC VARIABILITY; HEPATITIS C VIRUS; MOLECULAR CLONING; NONHUMAN; PLASMID; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; VIRUS GENE;

ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; CODON, INITIATOR; DEFECTIVE VIRUSES; DNA PRIMERS; DNA, VIRAL; ESCHERICHIA COLI; GENE EXPRESSION; GENES, VIRAL; GENETIC VECTORS; GENOME, VIRAL; HEPACIVIRUS; HEPATITIS C; HUMANS; POLYMERASE CHAIN REACTION; VARIATION (GENETICS); VIRAL STRUCTURAL PROTEINS;

ESCHERICHIA COLI; HEPATITIS C VIRUS; MAMMALIA; UNIDENTIFIED BACTERIOPHAGE;

EID: 0031442672     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.94.25.13909     Document Type: Article

References (34)

1. Houghton, M., Weiner, A., Han, J., Kuo, G. & Choo, Q.-L. (1991) Hepatology 14, 381-388.
2. Bukh, J., Miller, R. H. & Purcell, R. H. (1995) Sem. Liver Dis. 15, 41-63.
3. Holland, J. J., De la Torre, J. C. & Steinhauer, D. A. (1992) Curr. Top. Microbiol. Immunol. 176, 1-20.
4. Domingo, E., Martínez-Salas, E., Sobrino, F., de la Torre, J. C., Portela, A., Ortin, J., López-Galindez, C., Pérez-Breña, P., Villanueva, N., Nájera R., VandePol, S., Steinhauer, D., DePolo, N. & Holland, J. (1985) Gene 40, 1-8.
5. Martell, M., Esteban, J. I., Quer, J., Genescà, J., Weiner, A., Estehan, R., Guardia, J. & Gómez, J. (1992) J. Virol. 66, 3225-3229.
6. Farci, P., Bukh, J. & Purcell, R. H. (1997) Springer Sem. Immunopathol. 19, 5-26.
7. Weiner, A. J., Geysen, H. M., Christopherson, C., Hall, J. E., Mason, T. J., Saracco, G., Bonino, F., Crawford, K., Marion, C. D., Crawford, K. A., Brunetto, M., Barr, P. J., Miyamura, T., McHutchinson, J. & Houghton, M. (1992) Proc. Natl. Acad. Sci. USA 89, 3468-3472.
8. Kato, N., Ootsuyama, Y., Sekiya, H., Ohkoshi, S., Nakazawa, T., Hijikata, M. & Shimotohno, K. (1994) J. Virol. 68, 4776-4784.
9. Van Doorn, L.-J., Capriles, I., Maertens, G., DeLeys, R., Murray, K., Kos, T., Schellekens, H. & Quint, W. (1995) J. Virol. 69, 773-778.
10. Farci, P., Shimoda, A., Wong, D., Cabezon, T., De Gioannis, D., Strazzera, A., Shimizu, Y., Shapiro, M, Alter, H. J. & Purcell, R. H. (1996) Proc. Natl. Acad. Sci. USA 93, 15394-15399.
11. Okada, S.-I., Akahane, Y., Suzuki, H., Okamoto, H. & Mishiro, S. (1992) Hepatology 16, 619-624.
12. Enomoto, N., Kurosaki, M., Tanaka, Y., Marumo, F. & Sato, C. (1994) J. Gen. Virol. 75, 1361-1369.
13. Koizumi, K., Enomoto, N., Kurosaki, M, Murakami, T., Izumi, N., Marumo, F. & Sato, C. (1995) Hepatology 22, 30-35.
14. Higashi, Y., Kakumu, S., Yoshioka, K., Wakita, T., Mizokami, M., Ohha, K., Ito, Y., Ishikawa, T., Takayanagi, M. & Nagai, Y. (1993) Virology 197, 659-668.
15. Kao, J.-H., Chen, P.-J., Lai, M.-Y., Wang, T.-H. & Chen, D.-S. (1995) J. Infect. Dis. 172, 261-264.
16. Yoshioka, K., Aiyama, T., Okumura, A., Takayanagi, M., Iwata, K., Ishikawa, T., Nagai, Y. & Kakumu, S. (1997)J. Infect. Dis. 175, 505-510.
17. Smith, D. B., McAllister, J., Casino C. & Simmonds, P. (1997) J. Gen. Virol. 78, 1511-1519.
18. Meyerhans, A., Cheynier, R., Albert, J., Seth, M., Kwok, S., Sninsky, J., Morfeldt-Månson, L., Asjö, B. & Wain-Hobson, S. (1989) Cell 58, 901-910.
19. Balfe, P., Simmonds, P., Ludlam, C. A., Bishop, J. O. & Leigh Brown, A. J. (1990) J. Virol. 64, 6221-6233.
20. Vartanian, J.-P., Meyerhans, A., Henry, M. & Wain-Hobson, S. (1992) AIDS 6, 1095-1098.
21. Schwartz, D. H., Viscidi, R., Laeyendecker, O., Song, H., Ray, S. C. & Michael, N. (1996) Immunol. Lett. 51, 3-6.
22. Feinstone, S. M., Alter, H. J., Dienes, H. P., Shimizu, Y., Popper, H., Blackmore, D., Sly, D., London, W. T. & Purcell, R. H. (1981) J. Infect. Dis. 144, 588-598.
23. Tellier, R., Bukh, J., Emerson, S. U., Miller, R. H. & Purcell, R. H. (1996) J. Clin. Micobiol. 34, 3085-3091.
24. Yanagi, M., Purcell, R. H., Emerson, S. U. & Bukh, J. (1997) Proc. Natl. Acad. Sci. USA 94, 8738-8743.
25. Shimizu, Y. K., Iwamoto, A., Hijikata, M. & Purcell, R. H. (1992) Proc. Natl. Acad. Sci. USA 89, 5477-5481.
26. Thanaraj, T. A. & Pandit, M. W. (1989) Nucleic Acids Res. 17, 2973-2985.
27. Sprengart, M. L., Fatscher, H. P. & Fuchs, E. (1990) Nucleic Acids Res. 18, 1719-1723.
28. Gualerzi, C. O. & Pon, C. L. (1990) Biochemistry 29, 5881-5889.
29. de Smit, M. H. & van Duin, J. (1994) J. Mol. Biol. 235, 173-184.
30. Miller, J. H. (1992) in A Short Course in Bacterial Genetics: A Laboratory Manual and Handbook for Escherichia coli and Related Bacteria, ed. Miller, J. H. (Cold Spring Harbor Lab. Press, Plainview, NY), pp. 20.1-20.4.
31. Ringquist, S., Shinedling, S., Barrick, D., Green, L., Binkley, J., Stormo, G. D. & Gold, L. (1992) Mol. Microbiol. 6, 1219-1229.
32. Eggertsson, G. & Söll, D. (1988) Microbiol. Rev. 52, 354-374.
33. Yi, M., Nakamoto, Y., Kaneko, S, Yamashita, T. & Murakami, S. (1997) Virology 231, 119-129.
34. Kolykhalov, A. A., Agapov, E. V., Blight, K. J., Mihalik, K., Feinstone, S. M. & Rice, C. M. (1997) Science 277, 570-574.