Tinkerbell - A tool for interactive segmentation of 3D data

Journal of Structural Biology

Volumn 120, Issue 3, 1997, Pages 266-275

  Li, Yanhong ^a,b   Leith, Ardean ^a   Frank, Joachim ^a,c  

^a WADSWORTH CENTER   (United States)

^b State University of New York   (United States)

^c STATE UNIVERSITY OF NEW YORK   (United States)

Author keywords

Manipulation of 3D images; Segmentation; Tomography

Indexed keywords

AUTOMATION; CALCIFICATION; COMPUTER PROGRAM; CONFERENCE PAPER; DATA ANALYSIS; DIAGNOSTIC IMAGING; IMAGE RECONSTRUCTION; MITOCHONDRIAL MEMBRANE; NONHUMAN; PRIORITY JOURNAL; THREE DIMENSIONAL IMAGING; TOMOGRAPHY;

EID: 0031405779     PISSN: 10478477     EISSN: None     Source Type: Journal    
DOI: 10.1006/jsbi.1997.3917     Document Type: Conference Paper

References (23)

1. Barnard D. P., Turner J. N., Frank J., McEwen B. F. A 360° single-axis tilt stage for the high-voltage electron microscope. J. Microsc. 167:1992;39-48.
2. Carazo J. M., Frank J. The Fidelity of 3D Reconstructions from incomplete data and the use of restoration methods. Electron Tomography. 1992;Plenum, New York. p. 117-166.
3. Chalcroft J. P., Davey C. L. A simply constructed extreme-tilt holder for the Philips eucentric goniometer stage. J. Microsc. 134:1984;41-48.
4. J. Frank, 1992, Electron Tomography, Plenum, New York.
5. Frank J. Approaches to large-scale structures. Curr. Opin. Struct. Biol. 5:1995;194-201.
6. Frank J. Three-Dimensional Electron Microscopy of Macromolecular Assemblies. 1996;Academic Press, San Diego.
7. Frank J., McEwen B. F. Electron tomography's remaining problems: How to fill the wedge in Fourier space and how to see what you've got in real space. Bailey G. W., Bentley J., Small J. A. Proceedings, 50th Annual Meeting of the Electron Microscopy Society of America. 1992;1062-1063 San Francisco Press, San Francisco.
8. Frank J., Zhu J., Penczek P., Li Y., Srivastava S., Verschoor A., Radermacher M., Grassucci R., Lata R. K., Agrawal R. K. A model of protein synthesis based on cryo-electron microscopy of theE. coli. Nature. 376:1995;391-392.
9. Frank J., Radermacher M., Penczek P., Zhu J., Li Y., Ladjadj M., Leith A. SPIDER and WEB: Processing and visualization of images in 3D electron microscopy and related fields. J. Struct. Biol. 116:1996;190-199.
10. Henn C., Teschner M., Engel A., Aebi U. Real-time isocontouring and texture mapping meet new challenges in interactive molecular graphics applications. J. Struct. Biol. 116:1996;86-92.
11. Hoppe W., Gassmann J., Hunsmann N., Schramm H. J., Sturm M. Three-dimensional reconstruction of individual negatively stained yeast fatty-acid synthetase molecules from tilt series in the electron microscope. Hoppe-Seyler's Z. Physiol. Chem. 355:1974;1483-1487.
12. Koster A. J., Chen H., Sedat J. W., Agard D. A. Automated microscopy for electron tomography. Ultramicroscopy. 46:1992;207-227.
13. Leith A., Marko M., Parsons D. F. Computer Graphics for cellular reconstruction. IEEE Comp. Graphics Appl. 9:1989;16-23.
14. Mannella C. A., Marko M., Penczek P., Barnard D., Frank J. The internal compartmentation of rat-liver mitochondria: Tomographic study using the high-voltage transmission electron microscope. Microsc. Res. Tech. 27:1994;278-283.
15. Mannella C. A., Marko M., Buttle K. Reconsidering mitochondrial structure: New views of an old organelle. Trends Biochem. Sci. 22:1997;37-38.
16. Marko M., Leith A. Sterecon - Three-dimensional reconstructions from stereoscopic contouring. J. Struct. Biol. 116:1996;93-98.
17. McEwen B. F., Arena J. T., Frank J., Rieder C. L. Structure of the colcemid-treated PtK1 kinetochore outer plate as determined by high voltage electron microscopic tomography. J. Cell Biol. 120:1993;301-312.
18. McEwen B. F., Song M. J., Landis W. J. Quantitative determination of the mineral distribution in different collagen zones of calcifying tendon using high voltage electron microscopic tomography. J. Comput. Assist. Microsc. 3:1991;201-210.
19. McEwen B. F., Heagle A. B. Electron microscopic tomography: A tool for probing the structure and function of subcellular components. Int. J. Imaging Syst. Technol. 8:1997;175-187.
20. Penczek P., Marko M., Buttle K., Frank J. Double-tilt electron tomography. Ultramicroscopy. 60:1995;393-410.
21. Rath B. K., Marko M., Radermacher M., Frank J. Low-dose automated electron tomography: A recent implementation. J. Strut. Biol. 120:1997.
22. Teschner M., Henn C., Vollhardt H., Reiling S., Brickmann J. Texture mapping: A new tool for molecular graphics. J. Mol. Graph. 12:1994;98-105.
23. J. Wernecke, 1993, The Inventor Mentor: Programming Object-Oriented 3D Graphics with Open Inventor, Addison-Wesley, CA.