Cloning, sequencing and transcriptional analysis of a Streptomyces coelicolor operon containing the rplM and rpsI genes encoding ribosomal proteins ScoL13 and ScoS9

Molecular and General Genetics

Volumn 257, Issue 1, 1997, Pages 91-96

  Sanchez, C ^a   Blanco, G ^a   Mendez, C ^a   Salas, J A ^a  

^a DEPARTAMENTO DE BIOQUÍMICA Y BIOLOGÍA MOLECULAR   (Spain)

Author keywords

Actinomycetes; Genes rpsI rplM; Ribosomal proteins S9 L13

Indexed keywords

RIBOSOME PROTEIN;

AMINO TERMINAL SEQUENCE; ARTICLE; DNA LIBRARY; MOLECULAR CLONING; NONHUMAN; OPERON; PRIORITY JOURNAL; PROMOTER REGION; STREPTOMYCES COELICOLOR; TRANSCRIPTION REGULATION;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BASE SEQUENCE; CLONING, MOLECULAR; GENE EXPRESSION REGULATION, BACTERIAL; MOLECULAR SEQUENCE DATA; OPERON; PROMOTER REGIONS (GENETICS); RIBOSOMAL PROTEINS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; STREPTOMYCES; TRANSCRIPTION, GENETIC;

ACTINOBACTERIA (CLASS); EUKARYOTA; FUNGI; MYXOGASTRIA; STREPTOMYCES COELICOLOR; UNCULTURED ACTINOMYCETE;

EID: 0031405727     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004380050627     Document Type: Article

References (36)

1. Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (1992) Current protocols in molecular biology. John Wiley and Sons, New York
2. Blanco G, Parra F, Méndez C, Salas JA (1992) The nucleotide sequence of the L10 equivalent ribosomal protein from Streptomyces antibioticus. Nucleic Acids Res 20:5223
3. Blanco G, Rodicio R, Puglia AM, Méndez C, Thompson CJ, Salas JA (1994) Synthesis of ribosomal proteins during growth of Streptomyces coelicolor. Mol Microbiol 12:375-385
4. Calcutt MJ, Schmidt FJ (1992) Conserved arrangement in the origin region of the Streptomyces coelicolor chromosome. J Bacteriol 174:3220-3226
5. Cho EJ, Bae JB, Kang JG, Roe JH (1996) Molecular analysis of RNA polymerase alpha subunit gene from Streptomyces coelicolor A3(2). Nucleic Acids Res 24:4565-4571
6. Clayton TM, Bibb MJ (1990) Streptomyces promoter-probe plasmids that utilise the xylE gene of Pseudomonas putida. Nucleic Acid Res 18:1077
7. Devereux J, Haeberli P, Smithies O (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acid Res 12:387-395
8. Doull JL, Vining LC (1989) Culture conditions promoting dispersed growth and biphasic production of actinorhodin in shaken cultures of Streptomyces coelicolor A3(2). FEMS Microbiol Lett 65:265-268
9. Fierro JF, Parra F, Quirós LM, Hardisson C. Salas JA (1987) Heterogeneity of the ribosomal protein pattern in mycelium of Streptomyces species. FEMS Microbiol Lett 41:283-287
10. Hale VA, O'Brien Y, Schotel JL (1995) Cloning and sequencing of a secY homolog from Streptomyces scabies. Gene 163:87-92
11. Hanner M, Mayer C, Köhrer C, Golderer G, Gröbner P, Piendl W (1994) Autogenous translational regulation of the ribosomal MvaL 1 operon in the arehaebacterium Methanococcus vanielli. J Bacteriol 176:409-418
12. Himmelreich R, Hilbert H, Plagens H, Pirkl E, Li B-C, Herrmann R (1996) Complete sequence of the genome of the bacterium Mycoplasma pneumoniae. Nucleic Acids Res 24:4420 4449
13. Hopwood DA, Bibb MJ, Chater KF, Kieser T, Bruton CJ, Kieser HM, Lydiate DJ, Smith CP, Ward JM, Schrempf H (1985) Genetic manipulation of Streptomyces. A laboratory manual. The John Innes Foundation, Norwich, England
14. Isono S, Thamm S, Kitakawa M, Isono K (1985) Cloning and nucleotide sequencing of the genes for ribosomal proteins S9 (rpsI) and L13 (rplM) of EscherichiA coli. Mol Gen Genet 198:279 282
15. Katayama M, Sakai Y, Okamoto S, Ihara F, Nihira T, Yamada Y (1996) Gene organisation in the ada-rplL region of Streptomyces virginiae. Gene 171:135 136
16. Kawasaki H, Emori Y, Suzuki K (1990) Production and separation of peptides from proteins stained with Coomassie brilliant blue R-250 after separation by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Anal Biochem 191: 332 336
17. Leu. the enolase, and a putative membrane protein in the archaebacterium Haloarcula (Halobacterium) marismortui. J Biol Chem 266:24573-24579
18. Langer D, Hain J, Thuriaux P, Zillig W (1995) Transcription in Archaea: similarity to that in Eucarya. Proc Natl Acad Sci USA 92:5768 5772
19. Mikulik K, Janda I, Weiser J, Statsna J, Jiranova A (1984) RNA and ribosomal protein patterns during aerial spore germination in Streptomyces grandticolor. Eur J Biochem 145:381-388
20. Ochi K (1992) Polyacrylamide gel electrophoresis analysis of ribosomal protein: a new approach for actinomycele taxonomy. Gene 115:261 265
21. Overhoff-Freundlieb B, Freudl R (1991) Supression of an Escherichia coli sec Ats mutant by a gene cloned from Staphylococcus carnosus. FEMS Microbiol Lett 84:143-150
22. Parra F, Blaneo G, Martin JM, Balbín M, Méndez C, Salas JA (1992) Cloning and sequence of a gene encoding the L7/L12 ribosomal protein equivalent of Streptomyces antibioticus. Gene 118:127 129
23. Quirós LM, Parra F, Hardisson C, Salas JA (1989) Structural and functional analysis of ribosomal subunits from vegetative mycelium and spores of Streptomyces antibioticus. J Gen Microbiol 135:1661 1670
24. Quirós LM, Parra F, Salas JA (1992) Changes in ribosomal proteins during colony development in Streptomyces. Can J Microbiol 38:1260-1269
25. Ruengjitehawalya M. Okamoto S, Nihira T, Yamada Y (1993) Nucleotide sequence of the genes encoding L11 and L1 equivalent ribosomal proteins from Streptomyces sp. FR1-5. Nucleic Acids Res 21:2524
26. Sambrook J, Fritsch E, Maniatis T (1989) Molecular cloning: a laboratory manual (2nd edn). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
27. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 74:5463-5467
28. Strohl WR (1992) Compilation and analysis of DNA sequences associated with apparent streptomycete promoters. Nucleic Acids Res 20:961-974
29. Studier FW, Moffat BA (1986) Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J Mol Biol 189:113-130
30. Theisen M. Potter AA (1992) Cloning, sequencing, expression, and functional studies of a 15000-molecular-weight Haemophilus somnus antigen similar to Escherichia coli ribosomal protein S9. J Bacteriol 174:17-23
31. VanBogelen RA, Hutton ME, Neidhardt FC (1990) Gene/protein database of Escherichia coli K-12: Edition 3. Electrophoresis 11:1131-1166
32. Wittmann-Liebold B, Köpke AKE, Arndt E, Krömer W. Hatakeyama T, Wittmann HG (1990) Sequence comparison and evolution of ribosomal proteins and their genes. In: Hill WE. Dahlberg A, Garrett RA, Moore PB, Sehlessinger D, Warner JR (eds) The Ribosome: structure, function and evolution. American Society for Microbiology, Washington DC, pp 598-616
33. Wright F, Bibb MJ (1992) Codon usage in the G + C-rich Streptomyces genome. Gene 113:55-65
34. Yasumoto K, Liu H, Jeong SM, Ohaslii Y, Kakinuma S, Tanaka K, Kawamura F, Yoshikawa H, Takahashi H (1996) Sequence analysis of a 50 kb region between spoOH and rrnH on the Bacilus subtilis chromosome. Microbiology 142:3039-3046
35. Zuker M, Stiegler P (1981) Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res 9: 133-148
36. Zukowski MM, Gaffney DF, Speck D, Kauffmann M, Findeli A, Wiscup A. Lecocq JP (1983) Chromogenic identification of genetic regulatory signals in Bacillus subtilis based on expression of a cloned Pseudomonas gene. Proc Natl Acad Sci USA 80:1101-1105