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0029063951
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A priori prediction of activity for HIV-1 protease inhibitors employing energy minimization in the active site
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0032510317
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Comparative binding energy (COMBINE) analysis of HIV-1 protease inhibitors: Incorporation of solvent effects and validation as a powerful tool in receptor-based drug design
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Pérez C., Pastor M., Ortiz A.R., Gago F. Comparative binding energy (COMBINE) analysis of HIV-1 protease inhibitors Incorporation of solvent effects and validation as a powerful tool in receptor-based drug design . J. Med. Chem. 41:1998;836-852.
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Prediction of drug binding affinities by comparative binding energy analysis
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Comparative binding energy analysis
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(H. Kubinyi, G. Folkers, and Y.C. Martin, eds.). Kluwer Academic Publishers, Dordrecht
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Wade, R.C., Ortiz, A.R., and Gago, F. Comparative binding energy analysis. In: 3D QSAR in Drug Design, Vol. 2: Ligand-Protein Interactions and Molecular Similarity (H. Kubinyi, G. Folkers, and Y.C. Martin, eds.). Kluwer Academic Publishers, Dordrecht, 1998, pp. 19-34.
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Pearlman, D.A., Case, D.A., Caldwell, J.W., Ross, W.S., Cheatham, T.E., Ferguson, D.M., Seibel, G.L., Singh, U.C., Weiner, P., and Kollman, P.A. AMBER (UCSF): Assisted Model Building with Energy Refinement, version 4.1. Department of Pharmaceutical Chemistry, University of California, San Francisco, 1995.
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A rapid finite difference algorithm, utilizing successive over-relaxation to solve the Poisson-Boltzmann equation
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Solution NMR evidence that the HIV-1 protease catalytic aspartyl groups have different ionization states in the complex formed with the asymmetric drug KNI-272
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Wang Y.-X., Freedberg D.I., Yamazaki T., Wingfield P.T., Stahl S.J., Kaufman J.D., Kiso Y., Torchia D.A. Solution NMR evidence that the HIV-1 protease catalytic aspartyl groups have different ionization states in the complex formed with the asymmetric drug KNI-272. Biochemistry. 35:1996;9945-9950.
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0029011701
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A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
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Cornell W.D., Cieplak P., Bayly C.I., Gould I.R., Merz K.M., Ferguson D.M., Spellmeyer D.C., Fox T., Caldwell J.W., Kollman P.A. A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J. Am. Chem. Soc. 117:1995;5179-5197.
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