Map positions of 47 Arabidopsis sequences with sequence similarity to disease resistance genes

Plant Journal

Volumn 12, Issue 5, 1997, Pages 1197-1211

  Botella, Miguel A ^a   Coleman, Mark J ^a   Hughes, Douglas E ^b   Nishimura, Marc T ^b   Jones, Jonathan D G ^a   Somerville, Shauna C ^b  

^a SAINSBURY LABORATORY   (United Kingdom)

^b GEOPHYSICAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; EMBRYOPHYTA;

EID: 0031278434     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.1997.12051197.x     Document Type: Article

References (56)

1. Agyare, F.D., Lashkari, D.A., Lagos, A., Namath, A.F., Lagos, G., Davis, R.W. and Lemieux, B. (1997) Mapping expressed sequence tag sites on yeast artificial chromosome clones of Arabidopsis thaliana DNA. Genome Res. 7, 1-9.
2. Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
3. Andersen, M. (1996) The latest RI map using the Lister and Dean RI lines. Weeds World, 3, 27-42.
4. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A. and Struhl, K. (eds) (1990) Current Protocols in Molecular Biology. New York: Wiley Interscience.
5. Bennetzen, J.L. and Hulbert, S.H. (1992) Organization, instability, and evolution of plant disease resistance genes. Plant Mol. Biol. 20, 575-578.
6. Bent, A.F. (1996) Plant disease resistance genes: function meets structure. Plant Cell, 8, 1757-1771.
7. Bent, A.F., Kunkel, B.N., Dahlbeck, D., Brown, K.L., Schmidt, R., Giraudat, J., Leung, J. and Staskawicz, B.J. (1994) RPS2 of Arabidopsis thaliana: a leucine-rich repeat class of plant disease resistance genes. Science, 265, 1856-1860.
8. Bernatzky, R. and Tanksley, S.D. (1986) Genetics of actin-related sequences of tomato. Theor. Appl. Genet 72, 314-321.
9. Braun, D.M. and Walker, J.C. (1996) Plant transmembrane receptors: new pieces in the signaling puzzle. Trends Biochem. Sci. 21, 70-73.
10. Cai, D., Kleine, M., Kifle, S. et al. (1997) Positional cloning of a gene for nematode resistance in sugar beet. Science, 275, 832-834.
11. Clark, S.E., Williams, R.W. and Meyerowitz, E.M. (1997) The CLAVATA1 gene encodes a putative receptor kinase that controls shoot and floral meristem size in Arabidopsis. Cell, 89, 575-585.
12. Cooke, R., Raynal, M., Laudié, M. et al. (1996) Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs. Plant J. 9, 101-124.
13. Creusot, F., Fouilloux, E., Dron, M. et al. (1995) The CIC library: a large insert YAC library for genome mapping in Arabidopsis thaliana. Plant J. 8, 763-770.
14. Crute, I., Beynon, J., Dangl, J., Holub, E., Mauch-Mani, B., Slusarenko, A., Staskawicz, B. and Ausubel, F. (1994). Microbial pathogenesis of Arabidopsis. In Arabidopsis (Meyerowitz, E.M. and Somerville, C.R., eds). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, pp. 705-747.
15. Dixon, M.S., Jones, D.A., Keddie, J.S., Thomas, C.M., Harrison, K. and Jones, J.D.G. (1996) The tomato Cf-2 disease resistance locus comprises two functional genes encoding leucine-rich repeat proteins. Cell, 84, 451-459.
16. Ellis, J.G., Lawrence, G.J., Finnegan, E.J. and Anderson, P.A. (1995). Contrasting complexity of two rust resistance loci in flax. Proc. Natl Acad. Sci. USA, 92, 4185-4188.
17. Feuillet, C., Schachermayr, G. and Keller, B. (1997) Molecular cloning of a new receptor-like kinase gene encoded at the Lr10 disease resistance locus of wheat. Plant J. 11, 45-52.
18. Grant, M.R., Godiard, L., Straube, E., Ashfield, T., Lewald, J., Sattler, A., Innes, R.W. and Dangl, J.L. (1995) Structure of the Arabidopsis RPM1 gene enabling dual specificity disease resistance. Science, 269, 843-846.
19. Hirayama, T. and Oka, A. (1992) Novel protein kinase of Arabidopsis thaliana (APK1) that phosphorylates tyrosine, serine and threonine. Plant Mol. Biol. 20, 653-662.
20. Huffman, C.S. and Winston, F. (1987) A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli. Gene, 57, 267-272.
21. Holub, E.B. (1997) Organization of resistance genes in Arabidopsis. In The Gene-for-Gene Relationship in Plant-Parasite Interactions (Crute, I., Holub, E. and Burdon, J., eds). Wallingford, UK: CAB International, pp. 5-26.
22. Hulbert, S.H. and Michelmore, R.W. (1985) Linkage analysis of genes for resistance to downy mildew (Bremia lactucae) in lettuce (Lactuca sativa). Theor. Appl. Genet. 70, 520-528.
23. Hwang, I., Kohchi, T., Hauge, B.M. et al. (1991) Identification and map position of YAC clones comprising one-third of the Arabidopsis genome. Plant J. 4, 403-410.
24. Johal, G. and Briggs, S.P. (1992) Reductase activity encoded by the HM1 disease resistance gene in maize. Science, 258, 985-987.
25. Jones, D.A. and Jones, J.D.G. (1996) The roles of leucine-rich repeat proteins in plant defenses. Adv. Plant Pathol. 24, 90-167.
26. Jones, D.A., Thomas, C.M., Hammond Kosack, K.E., Balint-Kurti, P.J. and Jones, J.D.G. (1994) Isolation of the tomato Cf-9 gene for resistance to Cladosporium fulvum by transposon tagging. Science, 266, 789-793.
27. Jorgensen, J.H. (1994) Genetics of powdery mildew resistance in barley. Crit. Rev. Plant Sci. 13, 97-119.
28. Kanazin, V., Marek, L.F. and Shoemaker, R.C. (1996) Resistance gene analogs are conserved and clustered in soybean. Proc. Natl Acad. Sci. USA, 93, 11 746-11 750.
29. Koornneef, M. and Stam, P. (1992) Genetic analysis. In Methods in Arabidopsis Research (Koncz, C., Chua, N.-H. and Schell, J., eds). Singapore: World Scientific Publishing, pp. 83-99.
30. Kunkel, B.N. (1996) A useful weed put to work: genetic analysis of disease resistance in Arabidopsis thaliana. Trends Genet. 12, 63-69.
31. Lander, E., Green, P., Abrahamson, J., Barlow, A., Daley, M., Lincoln, S. and Newburg, L. (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1, 174-181.
32. Lawrence, G.J., Finnegan, E.J., Ayliffe, M.A. and Ellis, J.G. (1995) The L6 gene for flax rust resistance is related to the Arabidopsis bacterial resistance gene RPS2 and the tobacco viral resistance gene N. Plant Cell, 7, 1195-1206.
33. Leister, D., Ballvora, A., Salamini, F. and Gebhardt, C. (1996) A PCR-based approach for isolating pathogen resistance genes from potato with potential for wide application in plants. Nature Genet. 14, 421-429.
34. Lister, C. and Dean, C. (1993) Recombinant inbred lines for mapping RFLP and phenotypic markers in Arabidopsis thaliana. Plant J. 4, 745-50.
35. Loh, Y.-T. and Martin, G.B. (1995) The Pto bacterial resistance gene and the Fen insecticide sensitivity gene encode functional protein kinases with serine/threonine specificity. Plant Physiol. 108, 1735-1739.
36. Martin, G.B., Brommonschenkel, S.H., Chunwongse, J., Frary, A., Ganal, M.W., Spivey, R., Wu, T., Earle, E.D. and Tanksley, S.D. (1993) Map-based cloning of a protein kinase gene conferring disease resistance in tomato. Science, 262, 1432-1436.
37. Matallana, E., Bell, C.J., Dunn, P.J., Lu, M. and Ecker, J.R. (1992) Genetic and physical linkage of the Arabidopsis genome: methods for anchoring yeast artificial chromosome. In Methods in Arabidopsis Research (Koncz, C., Chua, N.-H. and Schell, J., eds). Singapore: World Scientific Publishing, pp. 144-169.
38. Mindrinos, M., Katagiri, F., Yu, G.-L. and Ausubel, F.M. (1994) The A. thaliana disease resistance gene RPS2 encodes a protein containing a nucleotide-binding site and leucine-rich repeats. Cell, 78, 1089-1099.
39. Moran, T.V. and Walker, J.C. (1993) Molecular cloning of two novel protein kinase genes from Arabidopsis thaliana. Biochim. Biophys. Acta, 1216, 9-14.
40. Newman, T., Bruijn F.J., Green, P. et al. (1994) Genes galore: a summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones. Plant Physiol. 106, 1241-1255.
41. Parker, J.E., Coleman, M.J., Szabo, V., Frost L.N., Schmidt, R., Biezen, E.V.D., Moores, T., Dean, C., Daniels, M.J. and Jones, J.D.G. (1997) The Arabidopsis downy mildew resistance gene RPP5 shares similarity to the Toll and Interleukin-1 receptors with W and L6. Plant Cell, 9, 879-894.
42. Pearson, W.R. and Lipman, D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA, 85, 2444-2448.
43. Pryor, T. and Ellis, J. (1993) The genetic complexity of fungal resistance genes in plants. Adv. Plant Pathol. 10, 281-305.
44. Richter, T.E., Pryor, T.J., Bennetzen, J.L. and Hulbert, S.H. (1995) New rust resistance specificities associated with recombination in the Rp1 complex in maize. Genetics, 141, 373-381.
45. Rothnie, H.M. (1996) Plant mRNA 3′-end formation. Plant Mol. Biol. 32, 43-61.
46. Rounsley, S.D., Glodek, A., Sutton, G., Adams, M.D., Somerville, C.R., Venter, J.C. and Kerlavage, A.R. (1996) The construction of Arabidopsis expressed sequence tag assemblies. Plant Physiol. 112, 1177-1183.
47. Schmidt, R., West, J., Cnops, G., Love, K., Balestrazzi, A. and Dean, C. (1996) Detailed description of four YAC contigs representing 17 Mbp of chromosome 4 of Arabidopsis thaliana ecotype Columbia. Plant J. 9, 755-765.
48. Somerville, S.C. and Somerville, C.R. (1996) Arabidopsis at 7: still growing like a weed. Plant Cell, 8, 1917-1933.
49. Song, W.-Y., Wang, G.-L., Chen, L.-L. et al. (1995) A receptor kinase-like protein encoded by the rice disease resistance gene, Xa2l. Science, 270, 1804-1806.
50. Torii, K.U., Mitsukawa, M., Oosumi, T., Matsuura, Y., Yokoyama, R., Whittier, R.F. and Komeda, Y. (1996) The Arabidopsis ERECTA gene encodes a putative receptor protein kinase with extracellular leucine-rich repeats. Plant Cell, 3, 735-746.
51. Whitham, S., Dinesh-Kumar, S.P., Choi, D., Hehl, R., Corr, C. and Baker, B. (1994). The product of the tobacco mosaic virus resistance gene N: similarity to Toll and the interleukin-1 receptor. Cell, 78, 1101-1115.
52. Wilson, I., Vogel, J. and Somerville, S. (1997) Signalling pathways: a common theme in plants and animals? Curr. Biol. 7, R175-R178.
53. Yanisch-Perron, C., Vieira, J. and Messing, J. (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene, 33, 103-119.
54. Yu, Y.G., Buss, G.R. and Saghai Maroof, M.A. (1996) Isolation of a superfamily of candidate disease-resistance genes in soybean based on a conserved nucleotide-binding site. Proc. Natl Acad. Sci. USA, 93, 11751-11756.
55. Zachgo, E.A., Wang, M.L., Dewdney, J., Bouchez, D., Camilleri, C., Belmonte, S., Huang, L., Dolan, M. and Goodman, H.M. (1996) A physical map of chromosome 2 of Arabidopsis thaliana. Genome Res. 6, 19-25.
56. Zhou, J., Loh, Y.-T, Bressan, R.A. and Martin, G.B. (1995) The tomato gene Pti1 encodes a serine/threonine kinase that is phosphorylated by Pto and is involved in the hypersensitive response. Cell, 83, 925-935.