rbcL Sequences: A Promising Tool for the Molecular Systematics of the Fern GenusTrichomanes(Hymenophyllaceae)?

Molecular Phylogenetics and Evolution

Volumn 8, Issue 2, 1997, Pages 128-138

  Dubuisson, J Y ^a  

^a INSTITUT DES SCIENCES DE L EVOLUTION   (France)

Author keywords

[No Author keywords available]

Indexed keywords

PLANT DNA; RBCL PROTEIN, PLASTID; RIBULOSEBISPHOSPHATE CARBOXYLASE; VEGETABLE PROTEIN;

ARTICLE; CLASSIFICATION; COMPARATIVE STUDY; ECOSYSTEM; GENE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR CLONING; MOLECULAR EVOLUTION; PHYLOGENY; PLANT;

CLONING, MOLECULAR; DNA, PLANT; ECOSYSTEM; EVOLUTION, MOLECULAR; GENES, PLANT; PHYLOGENY; PLANT PROTEINS; PLANTS; RIBULOSE-BISPHOSPHATE CARBOXYLASE;

EID: 0031252271     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1997.0414     Document Type: Article

References (41)

1. Albert V. A., Backlund A., Bremer K., Chase M. W., Manhart J. R., Mishler B. D., Nixon K. C. Functional constraints andrbc. Ann. Mo. Bot. Gard. 81:1994;534-567.
2. Baum D. rbc. Trends Ecol. Evol. 9:1994;39-41.
3. Braithwaite A. F. The cytology of some Hymenophyllaceae from the Salomon Islands. Brit. Fern Gaz. 10:1969;81-91.
4. Braithwaite A. F. Cytotaxonomic observations one some Hymenophyllaceae from the New Hebrides, Fiji and New Caledonia. Bot. J. Linn. Soc. 71:1975;167-189.
5. Bremer K. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution. 42:1988;795-803.
6. Chase M. W., Soltis D. E., Olmstead R. G., Morgan D., Les D. H., Mishler B. D., Duvall M. R., Price R. A., Hills H. G., Qiu Y.-L., Kron K. A., Rettig J. H., Conti E., Palmer J. D., Manhart J. R., Sytsma K. J., Michaels H. J., Kress W. J., Karrol K. G., Clark W. D., Hedren M., Gaut B. S., Jansen R. K., Kim K.-J., Wimpee C. F., Smith J. F., Furnier G. R., Strauss S. H., Xiang Q.-U., Plunkett G. M., Soltis P. S., Swensen S. M., Williams S. E., Gadek P. A., Quinn C. J., Eguiarte L. E., Golenberg E., Learn J. G. H., Graham S. W., Barrett S. C. H., Dayanandan S., Albert V. A. Phylogenetic of seed plants: An analysis of nucleotide sequences from the plastid generbc. Ann. Mo. Bot. Gard. 80:1993;528-580.
7. Clegg M. T. Chloroplast gene sequences and the study of plant evolution. Proc. Natl. Acad. Sci. USA. 90:1993;363-367.
8. Copeland E. B. Trichomanes. Philip. J. Sci. 51:1933;119-270.
9. Copeland E. B. Genera Hymenophyllacearum. Philip. J. Sci. 67:1938;2-110.
10. Doyle J. J., Doyle J. L. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19:1987;11-15.
11. J.-Y. Dubuisson, 1996, Systématique du genreTrichomanes, University of Montpellier II.
12. Dubuisson J.-Y. Systematic relationships within the genusTrichomanes s.l. Bot. J. Linn. Soc. 123:1997;265-296.
13. Felsenstein J. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:1978;401-410.
14. J. Felsenstein, 1993, PHYLIP Version 3.5c, University of California, Berkeley, CA.
15. Hasebe M., Omori T., Nakazawa M., Sano T., Kato M., Iwatsuki K. rbc. Proc. Natl. Acad. Sci. USA. 91:1994;5730-5734.
16. Hasebe M., Wolf P. G., Pryer K. M., Ueda K., Ito M., Sano R., Gastony G. J., yokoyama J., Manhart J. R., Murakami N., Crane E. H., Haufler C. H., Hauk W. D. A global analysis of fern phylogeny based onrbc. Am. Fern J. 85:1995;134-181.
17. Hillis D. M., Huelsenbeck J. P. Signal, noise, and reliability in molecular phylogenetic analyses. J. Hered. 83:1992;189-195.
18. Iwatsuki K. Studies in the systematics of filmy ferns. III. An observation on the involucres. Bot. Mag. Tokyo. 90:1977;259-267.
19. Iwatsuki K. Studies in the systematics of filmy ferns VII. A scheme of classification based chiefly on the Asiatic species. Acta Phytotax. Geobot. 35:1984;165-179.
20. Iwatsuki K. Hymenophyllaceae. The families and genera of vascular plants: Pteridophytes and Gymnosperms. 1990;Springer-Verlag, Berlin. p. 157-163.
21. Lecointre G., Philippe H., Vân Lê H. L., Le Guyader H. Species sampling has a major impact on phylogenetic inference. Mol. Phylogenet. Evol. 2:1993;205-224.
22. Lellinger D. B. Fascicle 3: Hymenophyllaceae. Flora of the Guianas. 1994;Koeltz Scientific Books, Königstein.
23. Mamay S. H. An epiphytic species ofTubicaulis. Ann. Bot. 62:1952;145-163.
24. B. D. Mishler, M. J. Donoghue, V. A. Albert, 1991, The Decay Index as a Measure of Relative Robustness within a Cladogram, Willi Hennig Society Meeting, Toronto, Ontario.
25. Morton C. V. The genera, subgenera, and sections of the Hymenophyllaceae. Contrib. U.S. Nat. Herb. 38:1968;153-214.
26. Murakami N. Systematics and evolutionary biology of the fern genusHymenasplenium. J. Plant Res. 108:1995;257-268.
27. Philippe H. MUST, a computer package for Management Utilities for Sequences and Trees. Nucleic Acids Res. 21:1993;5264-5272.
28. Philippe H., Lecointre G., Vân Lê H. L., Le Guyader H. A critical study of homoplasy in molecular data with the use of a morphologically based cladogram, and its consequences for character weighting. Mol. Biol. Evol. 13:1996;1174-1186.
29. Pichi-Sermolli R. E. G. Tentamen Pteridophytorum genera in taxonomicum ordinem redigendi. Webbia. 31:1977;313-512.
30. Rothwell G. W. Botryopteris forensisPsaronius. Am. J. Bot. 78:1991;782-788.
31. Saitou N., Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
32. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain terminating inhibitors. Proc. Natl. Acad. Sci. USA. 74:1977;5463-5467.
33. Stewart W. N., Rothwell G. W. Paleobotany and the Evolution of Plants. 1993;Cambridge Univ. Press, Cambridge.
34. Strimmer K., Von Haeseler A. Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13:1996;964-969.
35. D. Swofford, 1993, PAUP, Phylogenetic Analysis Using Parsimony, Champaign, IL.
36. Tryon R. M., Tryon A. F. Ferns and Allied Plants, with Special Reference to Tropical America. 1982;Springer-Verlag, New York.
37. Vareschi V. Familia: Hymenophyllaceae Gaud. Lasser T. Helechos. Flora de Venezuela. 1968;190-253 Instituto Botanico, Caracas.
38. Wang Z., Rossman T. G. Isolation of DNA fragments from agarose gel by centrifugation. Nucleic Acids Res. 22:1994;2862-2863.
39. Webb D. M., Knapp S. J. DNA extraction from previously recalcitrant plant genus. Plant Mol. Biol. Rep. 8:1990;180-185.
40. Wessels Boer J. G. The New World species ofTrichomanesDidymoglossumMicrogonium. Acta Bot. Neerl. 11:1962;277-330.
41. Wolf P. G., Soltis P. S., Soltis D. E. Phylogenetic relationships of Dennstaedtioid ferns: evidence fromrbc. Mol. Phylogenet. Evol. 3:1994;383-392.