Structure and expression of the murine Sp100 nuclear dot gene

Genomics

Volumn 43, Issue 3, 1997, Pages 298-306

  Weichenhan, Dieter ^a   Kunze, Bärbel ^a   Zacker, Stefan ^a   Traut, Walther ^a   Winking, Heinz ^a  

^a UNIVERSITY OF LÜBECK   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOANTIGEN;

ARTICLE; AUTOIMMUNITY; BILIARY CIRRHOSIS; GENE FUNCTION; GENE STRUCTURE; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS;

ANIMALIA; MURINAE; MUS CAROLI; MUS MUSCULUS; MUSCULUS;

EID: 0031213673     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1997.4834     Document Type: Article

References (31)

1. Agulnik, S., Plass, C., Traut, W., and Winking, H. (1993). Evolution of a long-range repeat family in chromosome 1 of the genus Mus. Mamm. Genome 4: 704-710.
2. Alonso, S., Minty, A., Bourlet, Y., and Buckingham, M. (1986). Comparison of three actin-coding sequences in the mouse; Evolutionary relationships between the actin genes of warm-blooded vertebrates. J. Mol. Evol. 23: 11-22.
3. Birnboim, H. C., and Doly, J. (1979). A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7: 1513-1523.
4. Chomczynski, P., and Sacchi, N. (1987). Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162: 156-159.
5. Daniel, M. T., Koken, M., Romagne, M., Barbey, S., Bazarbaki, A., Stadler, M., Guillemin, M. C., Degos, L., Chomienne, C., and de The, H. (1993). PML protein expression in hematopoietic and acute promyeloitic leukemia cells. Blood 82: 1858-1867.
6. Darnell, J. E., Jr., Kerr, I. M., and Stark, G. R. (1994). Jak-STAT pathways and transcriptional activation in response to IFNs and other extracellular signaling proteins. Science 264: 1415-1421.
7. del Sal, G., Manfioletti, G., and Schneider, C. (1988). A one-tube plasmid DNA mini-preparation suitable for sequencing. Nucleic Acids Res. 16: 9878.
8. Dent, A. L., Yewdell, J., Puvion-Dutilleul, F., Koken, M. H. M., de The, H., and Staudt, L. M. (1996). LYSP100-associated nuclear domains (LANDs): Description of a new class of subnuclear structures and their relationship to PML nuclear bodies. Blood 88: 1423-1436.
9. Eckert, W. A., Plass, C., Weith, A., Traut, W., and Winking, H. (1991). Transcripts from amplified sequences of an inherited homogeneously staining region in chromosome 1 of the house mouse (Mus musculus). Mol. Cell. Biol. 11: 2229-2235.
10. Evans, G. A., Lewis, K., and Rothenberg, B. E. (1989). High efficiency vectors for cosmid microcloning and genomic analysis. Gene 79: 9-29.
11. Frohman, M. A. (1993). Rapid amplification of complementary DNA ends for generation of full-length complementary DNAs: Thermal RACE. Methods Enzymol. 218: 340-356.
12. Grötzinger, T., Jensen, K., Guldner, H. H., Sternsdorf, T., Szostecki, C., Schwab, M., Savelyeva, L., Reich, B., and Will, H. (1996a). A highly amplified mouse gene is homologous to the human interferon-responsive Sp100 gene encoding an autoantigen associated with nuclear dots. Mol. Cell. Biol. 16: 1150-1156.
13. Grötzinger, T., Jensen, K., and Will, H. (1996b). The interferon (IFN)-stimulated gene Sp100 promoter contains an IFN-γ activation site and an imperfect IFN-stimulated response element which mediate type I IFN inducibility. J. Biol. Chem. 271: 25253-25260.
14. Guldner, H. H., Szostecki, C., Grötzinger, T., and Will, H. (1992). IFN enhance expression of Sp100, an autoantigen in primary biliary cirrhosis. J. Immunol. 149: 4067-4073.
15. Kadereit, S., Gewert, D. R., Galabru, J., Hovanessian, A. G., and Meurs, E. F. (1993). Molecular cloning of two new interferon-induced, highly related nuclear phosphoproteins. J. Biol. Chem. 268: 24432-24441.
16. Kadonaga, J. T., Jones, K. A., and Tijan, R. (1986). Promoter-specific activation of RNA polymerase II transcription by Sp1. Trends Biochem. Sci. 11: 20-23.
17. Korioth, F., Gieffers, C., Maul, G. G., and Frey, J. (1995). Molecular characterization of NDP52, a novel protein of the nuclear domain 10, which is redistributed upon virus infection and interferon treatment. J. Cell Biol. 130: 1-13.
18. Kunze, B., Weichenhan, D., Virks, P., Traut, W., and Winking, H. (1996). Copy number of a clustered long-range repeat determines C-band staining. Cytogenet. Cell Genet. 73: 86-91.
19. Maul, G. G., Guldner, H. H., and Spivack, J. G. (1993). Modification of discrete nuclear domains induced by herpes simplex virus type 1 immediate early gene product (ICPO). J. Gen. Virol. 74: 2679-2690.
20. Means, A. L., and Farnham, P. J. (1990). Transcription initiation from the dihydrofolate reductase promoter is positioned by HIP1 binding at the initiation site. Mol. Cell. Biol. 10: 653-661.
21. Plass, C., Weichenhan, D., Kunze, B., Hellwig, T., Schneider, C., Bautz, F. A., Grezschik, K.-H., Traut, W., and Winking, H. (1995). A member of the mouse LRR transcript family with homology to the human Sp100 gene. Hereditas 122: 245-256.
22. Puissant, C., and Houdebine, L.-M. (1990). An improvement of the single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. BioTechniques 8: 148-149.
23. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989). "Molecular Cloning: A Laboratory Manual," Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
24. Senapathy, P., Shapiro, M. B., and Harris, N. L. (1990). Splice junctions, branch point sites, and exons: sequence statistics, identification, and applications to genome project. Methods Enzymol. 183: 252-278.
25. Szostecki, C., Krippner, H., Penner, E., and Bautz, F.A. (1987). Autoimmune sera recognize a 100 kD nuclear protein antigen (sp-100). Clin. Exp. Immunol. 68: 108-116.
26. Szostecki, C., Guldner, H. H., Netter, H. J., and Will, H. (1990). Isolation and characterization of cDNA encoding a human nuclear anti-gen predominantly recognized by autoantibodies from patients with primary biliary cirrhosis. J. Immunol. 145: 4338-4347.
27. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
28. Traut, W., Winking, H., Plass, C., Weichenhan, D., Kunze, B., Hellwig, T., and Agulnik, S. (1994) An inherited homogeneously staining region derived from a long-range repeat family in the house mouse. In "Chromosomal Alterations, Origin and Significance" (G. Obe and A. T. Natarajan, Eds.), pp. 31-41, Springer-Verlag, Berlin/Heidelberg.
29. Weichenhan, D. (1991). Fast recovery of DNA from agarose gels by centrifugation through blotting paper. Trends Genet. 7: 109.
30. Weichenhan, D., Kunze, B., Plass, C., Hellwig, T., Winking, H., and Traut, W. (1995). A transcript family from a long-range repeat cluster of the house mouse. Genome 38: 239-245.
31. Xie, K., Lambie, E.J., and Snyder, M. (1993). Nuclear dot antigens may specify transcriptional domains in the nucleus. Mol. Cell. Biol. 13: 6170-6179.