Assignments, secondary structure and dynamics of the inhibitor-free catalytic fragment of human fibroblast collagenase

Journal of Biomolecular NMR

Volumn 10, Issue 1, 1997, Pages 9-19

  Moy, Franklin J ^a   Pisano, Michael R ^a   Chanda, Pranab K ^a   Urbano, Charlotte ^a   Killar, Loran M ^a   Sung, Mei Li ^a   Powers, Robert ^a  

^a PFIZER INC   (United States)

Author keywords

Backbone dynamics; Collagenase; Matrix metalloproteinase; Multidimensional NMR; Resonance assignments; Secondary structure

Indexed keywords

COLLAGENASE; INTERSTITIAL COLLAGENASE; PEPTIDE FRAGMENT; RECOMBINANT PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; AUDIOVISUAL EQUIPMENT; CHEMISTRY; CLONING; COMPARATIVE STUDY; ENZYMOLOGY; ESCHERICHIA COLI; FIBROBLAST; HUMAN; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; NUCLEAR MAGNETIC RESONANCE; PROTEIN SECONDARY STRUCTURE; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; CLONING, ORGANISM; COLLAGENASES; CRYSTALLOGRAPHY, X-RAY; ESCHERICHIA COLI; FIBROBLASTS; HUMANS; MATRIX METALLOPROTEINASE 1; MODELS, STRUCTURAL; MOLECULAR SEQUENCE DATA; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PEPTIDE FRAGMENTS; PROTEIN STRUCTURE, SECONDARY; RECOMBINANT PROTEINS;

EID: 0031174862     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1018362914316     Document Type: Article

References (63)

1. Bax, A., Clore, G.M. and Gronenborn, A.M. (1990) J. Magn. Reson., 88, 425-431.
2. Bax, A. and Pochapsky, S.S. (1992) J. Magn. Reson., 99, 638-643.
3. Becker, J.W., Marcy, A.I. and Rokosz, L.L. (1995) Protein Sci., 4, 1966-1976.
4. Bode, W., Reinemer, P., Huber, R., Kleine, T., Schnierer, S. and Tschesche, H. (1994) EMBO J., 13, 1263-1269.
5. Borkakoti, N., Winkler, F.K., Williams, D.H., D'Arcy, A., Broadhurst, M.J., Brown, P.A., Johnson, W.H. and Murray, E.J. (1994) Nat. Struct. Biol., 1, 106-110.
6. Botos, I., Scapozza, L., Zhang, D., Liotta, L.A. and Meyer, E.F. (1996) Proc. Natl. Acad. Sci. USA, 93, 2749-2754.
7. Broutin, I., Arnoux, B., Riche, C., Lecroisey, A., Keil, B., Pascard, C. and Ducruix, A. (1996) Acta Crystallogr., D52, 380-392.
8. Clore, G.M. and Gronenborn, A.M. (1989) Crit. Rev. Biochem. Mol. Biol., 24, 479-564.
9. Clore, G.M., Driscoll, P.C., Wingfield, P.T. and Gronenborn, A.M. (1990a) Biochemistry, 29, 7387-7401.
10. Clore, G.M., Szabo, A., Bax, A., Kay, L.E., Driscoll, P.C. and Gronenborn, A.M. (1990b) J. Am. Chem. Soc., 112, 4989-4991.
11. Clubb, R.T., Omichinski, J.G., Sakaguchi, K., Appella, E., Gronenborn, A.M. and Clore, G.M. (1995) Protein Sci., 4, 855.
12. Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J. and Bax, A. (1995) J. Biomol. NMR, 6, 277-293.
13. Farrow, N.A., Muhandiram, R., Singer, A.U., Pascal, S.M., Kay, C.M., Gish, G., Shoelson, S.E., Pawson, T., Forman-Kay, J.D. and Kay, L.E. (1994) Biochemistry, 33, 5984-6003.
14. Feng, R., Castelhano, A.L., Billedeau, R. and Yuan, Z. (1995) J. Am. Soc. Mass Spectrom., 6, 1105-1111.
15. Friedrichs, M.S., Mueller, L. and Wittekind, M. (1994) J. Biomol. NMR, 4, 703-726.
16. Garrett, D.S., Powers, R., Gronenborn, A.M. and Clore, G.M. (1991) J. Magn. Reson., 95, 214-220.
17. Gekko, K. and Timasheff, S.N. (1981a) Biochemistry, 20, 4667-4676.
18. Gekko, K. and Timasheff, S.N. (1981b) Biochemistry, 20, 4677-4686.
19. Goldberg, G.I., Wilhelm, S.M., Kronberger, A., Bauer, E.A., Grant, G.A. and Eisen, A.Z. (1986) J. Biol. Chem., 261, 6600-6605.
20. Gooley, P.R., Johnson, B.A., Marcy, A.I. and Cuca, G.C. (1993) Biochemistry, 32, 13098-13108.
21. Gooley, P.R., O'Connell, J.F. and Marcy, A.I. (1994) Nat. Struct. Biol., 1, 111-118.
22. Gooley, P.R., O'Connell, J.F., Marcy, A.I., Cuca, G.C., Axel, M.G., Caldwell, C.G., Hagmann, W.K. and Becker, J.W. (1996) J. Biomol. NMR, 7, 8-28.
23. Grymes, R.A., Kronberger, A. and Bauer, E.A. (1993) Clin. Dermatol., 9, 69-85.
24. Grzesiek, S. and Bax, A. (1992a) J. Am. Chem. Soc., 114, 6291-6293.
25. Grzesiek, S. and Bax, A. (1992b) J. Magn. Reson., 99, 201-207.
26. Grzesiek, S. and Bax, A. (1992c) J. Magn. Reson., 96, 432-440.
27. Grzesiek, S., Anglister, J. and Bax, A. (1993) J. Magn. Reson., B101, 114-119.
28. Grzesiek, S. and Bax, A. (1993) J. Biomol. NMR, 3, 185-204.
29. Ikura, M., Kay, L.E. and Bax, A. (1991) J. Biomol. NMR, 1, 299-304.
30. Kamath, U. and Shriver, J.W. (1989) J. Biol. Chem., 264, 5586.
31. Kay, L.E., Torchia, D.A. and Bax, A. (1989) Biochemistry, 28, 8972-8979.
32. Kay, L.E., Ikura, M., Tschudin, R. and Bax, A. (1990) J. Magn. Reson., 89, 496-514.
33. Kay, L.E., Nicholson, L.K., Delaglio, F., Bax, A. and Torchia, D.A. (1992) J. Magn. Reson., 97, 359-375.
34. Lovejoy, B., Cleasby, A., Hassell, A.M., Longley, K., Luther, M.A., Weigl, D., McGeehan, G., McElroy, A.B., Drewry, D., Lambert, M.H. and Jordan, S.R. (1994a) Science, 263, 375-377.
35. Lovejoy, B., Hassell, A.M. and Luther, M.A. (1994b) Biochemistry, 33, 8207-8217.
36. Lowry, C.L., McGeehan, G. and LeVine, H.I. (1992) Proteins Struct. Funct. Genet., 12, 42-48.
37. Marion, D., Driscoll, P.C., Kay, L.E., Wingfield, P.T., Bax, A., Gronenborn, A.M. and Clore, G.M. (1989a) Biochemistry, 28, 6150-6156.
38. Marion, D., Ikura, M., Tschudin, R. and Bax, A. (1989b) J. Magn. Reson., 85, 393-399.
39. Marion, D., Kay, L.E., Sparks, S.W., Torchia, D.A. and Bax, A. (1989c) J. Am. Chem. Soc., 111, 1515-1517.
40. Markley, J.L., Horsley, W.J. and Klein, M.P. (1971) J. Chem. Phys., 55, 3604.
41. Meiboom, S. and Gill, D. (1958) Rev. Sci. Instrum., 29, 688.
42. Morphy, J.R., Millican, T.A. and Porter, J.R. (1995) Curr. Med. Chem., 2, 743-762.
43. Moy, F.J., Seddon, A.P., Campbell, E.B., Boehlen, P. and Powers, R. (1995) J. Biomol. NMR, 6, 245-254.
44. Muller, D., Quantin, B., Gesnel, M.-C., Millon-Collard, R., Abecassis, J. and Breathnach, R. (1988) Biochem. J., 253, 187-192.
45. Palmer, A.G.I., Rance, M. and Wright, P.E. (1991) J. Am. Chem. Soc., 113, 4371.
46. Powers, R., Gronenborn, A.M., Clore, G.M. and Bax, A. (1991) J. Magn. Reson., 94, 209-213.
47. Powers, R., Clore, G.M., Stahl, S.J., Wingfield, P.T. and Gronenborn, A. (1992a) Biochemistry, 31, 9150-9157.
48. Powers, R., Garrett, D.S., March, C.J., Frieden, E.A., Gronenborn, A.M. and Clore, G.M. (1992b) Biochemistry, 31, 4334-4346.
49. Press, W.M., Flannery, B.P., Teukolsky, S.A. and Vetterling, W.T. (1986) Numerical Recipes, Cambridge University Press, Cambridge.
50. Ries, C. and Petrides, E. (1995) Biol. Chem. Hoppe-Seyler, 376, 345-355.
51. Sambrook, S., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, Cold Spring Harbour Laboratory Press, New York, NY, U.S.A.
52. Seavey, B.R., Farr, E.A., Westler, W.M. and Markley, J.L. (1991) J. Biomol. NMR, 1, 217-230.
53. Sklenář, V., Piotto, M., Leppik, R. and Saudek, V. (1993) J. Magn. Reson., A102, 241-245.
54. Spera, S. and Bax, A. (1991) J. Am. Chem. Soc., 113, 5490-5492.
55. Springman, E.B., Nagase, H., Birkedal-Hansen, H. and Van Wart, H.E. (1995) Biochemistry, 34, 15713-15720.
56. Spurlino, J.C., Smallwood, A.M., Carlton, D.D., Banks, T.M., Vavra, K.J., Johnson, J.S., Cook, E.R., Falvo, J., Wahl, R.C., Pulvino, T.A., Wendoloski, J.J. and Smith, D.L. (1994) Proteins Struct. Funct. Genet., 19, 98-109.
57. Stack, M.S. and Gray, R.D. (1990) Arch. Biochem. Biophys., 281, 257-263.
58. Stams, T., Spurlino, J.C., Smith, D.L., Wahl, R.C., Ho, T.F., Qoronfleh, M.W., Banks, T.M. and Rubin, B. (1994) Nat. Struct. Biol., 1, 119-123.
59. Van Doren, S.R., Kurochkin, A.V. and Ye, Q. (1993) Biochemistry, 32, 13109-13122.
60. Van Doren, S.R., Kurochkin, A.V., Hu, W., Ye, Q.-Z., Johnson, L.L., Hupe, D.J. and Zuiderweg, E.R.P. (1995) Protein Sci., 4, 2487-2498.
61. Vuister, G.W. and Bax, A. (1993) J. Am. Chem. Soc., 115, 7772-7777.
62. Weingarten, H. and Feder, J. (1985) Anal. Biochem., 147, 437-440.
63. Woessner Jr., J.F. (1991) FASEB J., 5, 2145-2154.