The mouse uracil-DNA glycosylase gene: Isolation of cDNA and genomic clones and mapping ung to mouse chromosome 5

Gene

Volumn 189, Issue 2, 1997, Pages 175-181

  Svendsen, Pia C ^a   Yee, Harris A ^a   Winkfein, Robert J ^a   Van De Sande, Johan H ^a  

^a UNIVERSITY OF CALGARY   (Canada)

Author keywords

Base excision; DNA repair; Mutation; Nucleotide sequence

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA; URACIL; URACIL DNA GLYCOSYLTRANSFERASE;

AMINO ACID SEQUENCE; ARTICLE; CHROMOSOME 5; CODING; CONTROLLED STUDY; EXCISION REPAIR; EXON; FLUORESCENCE IN SITU HYBRIDIZATION; GENE ISOLATION; GENE MAPPING; GENETIC ORGANIZATION; INTRON; MOLECULAR CLONING; MOUSE; NONHUMAN; PRIORITY JOURNAL;

EID: 0030972587     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(96)00797-4     Document Type: Article

References (39)

1. Aasland, R., Olsen, L.C., Spurr, N.K., Krokan, H.E. and Helland, D.E. (1990) Chromosomal assignment of human uracil-DNA glycosylase to chromosome 12. Genomics 7, 139-141.
2. Azizkhan, J.C., Jensen, D.E., Pierce, A.J. and Wade, M. (1993) Transcription from TATA-less promoters: dihydrofolate reductase as a model. Crit. Rev. Euk. Gene Express. 3, 229-254.
3. Boyle, A.L., Feltquite, D.M., Dracopoli, N.C., Housman, D.E. and Ward, D.C. (1992) Rapid physical mapping of cloned DNA on banded mouse chromosomes by fluorescence in situ hybridization. Genomics 12, 106-115.
4. Duncan, B.K. and Miller, J.H. (1980) Mutagenic deamination of cytosine residues in DNA. Nature 287, 560-561.
5. Focher, F., Mazzarello, P., Verri, A., Hubscher, U. and Spadari, S. (1990) Activity profiles of enzymes that control the uracil incorporation into DNA during neuronal development. Mut. Res. 237, 65-73.
6. Frederico, L.A., Kunkel, T.A. and Shaw, B.R. (1990) A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy. Biochemistry 29, 2532-2537.
7. Frohman, M.A., Dush, M.K. and Martin, G.R. (1988) Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer. Proc. Natl. Acad. Sci. USA 85, 8998-9002.
8. Gidoni, D., Dynan, W.S. and Tjian, R. (1984) Multiple specific contacts between a mammalian transcription factor and its cognate promoters. Nature 312, 409-413.
9. Graves, B.J., Johnson, P.F. and McKnight, S.L. (1986) Homologous recognition of a promoter domain common to the MSV LTR and the HSV tk gene. Cell 44, 565-576.
10. Haug, T., Skorpen, F., Lund, H. and Krokan, H.E. (1994) Structure of the gene for human uracil-DNA glycosylase and analysis of the promoter function. FEBS Lett. 353, 180-184.
11. Heng, H.H.Q. and Tsui, L.-C. (1993) Modes of DAPI banding and simultaneous in situ hybridization. Chromosoma 102, 325-332.
12. Impellizzeri, K.J., Anderson, B. and Burgers, P.M.J. (1991) The spectrum of spontaneous mutations in a Saccharomyces cerevisiae uracil-DNA-glycosylase mutant limits the function of this enzyme to cytosine deamination repair. J. Bacteriol. 173, 6807-6810.
13. Kavli, B., Slupphaug, G., Mol, C.D., Arval, A.S., Petersen, S.B., Tainer, J.A. and Krokan, H.E. (1996) Excision of cytosine and thymine from DNA by mutants of human uracil-DNA glycosylase. EMBO J. 15, 3442-3447.
14. Kozak, M. (1991) Structural features in eukaryotic mRNAs that modulate the initiation of translation. J. Biol. Chem. 266, 19867-19870.
15. Lichter, P., Tang, C.-J.C., Call, K., Hermanson, G., Evans, G.A., Housman, D. and Ward, D.C. (1990) High-resolution mapping of human chromosome 11 by in situ hybridization with cosmid clones. Science 247, 64-69.
16. Lindahl, T. (1974) An N-glycosidase from Escherichia coli that releases free uracil from DNA containing deaminated cytosine residues. Proc. Natl. Acad. Sci. USA 71, 3649-3653.
17. Lindahl, T. (1993) Instability and decay of the primary structure of DNA. Nature 362, 709-715.
18. Lindahl, T. and Nyberg, B. (1974) Heat-induced deamination of cytosine residues in deoxyribonucleic acid. Biochemistry 13, 3405-3410.
19. Lindahl, T., Ljunquist, S., Siegert, W., Nyberg, B. and Sperens, B. (1977) DNA N-glycosidases. Properties of uracil-DNA glycosidase from E. coli. J. Biol. Chem. 252, 3286-3294.
20. Meyer-Siegler, K., Mauro, D.J., Seal, G., Wurzer, J., DeRiel, J.K. and Sirover, M.A. (1991) A human nuclear uracil DNA glycosylase is the 37-kDA subunit of glyceraldehyde-3-phosphate dehydrogenase. Proc. Natl. Acad. Sci. USA 88, 8460-8464.
21. Mol, C.D., Arvai, A.S., Slupphaug, G., Kavil, B., Alseth, I., Krokan, H.E. and Tainer, J.A. (1995) Crystal structure and mutational analysis of human uracil-DNA glycosylase: Structural basis for specificity and catalysis. Cell 80, 869-878.
22. Müller, S.J. and Caradonna, S. (1991) Isolation and characterization of a human cDNA encoding uracil-DNA glycosylase. Biochim. Biophys. Acta 1088, 197-207.
23. Natesan, S. and Gilman, M.Z. (1993) NA bending and orientation-dependent function of YY1 in the c-fos promoter. Genes Dev. 7, 2497-2509.
24. Nevins, J.R. (1992) A closer look at E2F. Nature 358, 375-376.
25. Ohshima, Y. and Gotoh, Y. (1987) Signals for the selection of a splice site in pre-mRNA. J. Mol. Biol. 195, 247-259.
26. Olsen, L.C., Aasland, R., Wittwer, C.U., Krokan, H.E. and Helland, D.E. (1989) Molecular cloning of human uracil-DNA glycosylase, a highly conserved DNA repair enzyme. EMBO J. 8, 3121-3125.
27. Olsen, L.C., Aasland, R., Krokan, H.E. and Helland, D.E. (1991) Human uracil-DNA glycosylase complements E. coli ung mutants. Nucleic Acids Res. 19, 4473-4478.
28. Percival, K.J., Klein, M.B. and Burgers, P.M.J. (1989) Molecular cloning and primary structure of the uracil-DNA glycosylase gene from Saccharomyces cerevisiae. J. Biol. Chem. 264, 2593-2598.
29. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning. A Laboratory Manual, 2nd ed. CSHL Press, Cold Spring Harbor, NY.
30. Savva, R., McAuley-Hecht, K., Brown, T. and Pearl, L. (1995) The structural basis of specific base-excision repair by uracil-DNA glycosylase. Nature 373, 487-493.
31. Sihna, S., Maity, S.N., Lu, J. and de Crombrugghe, B. (1995) Recombinant rat CBF-C, the third subunit of CBF/NFY, allows the formation of a protein-DNA complex with CBF-A and CBF-B and with yeast HAP2 and HAP3. Proc. Natl. Acad. Sci. USA 92, 1624-1628.
32. Slupphaug, G., Olsen, L.C., Helland, D., Aasland, R. and Krokan, H.E. (1991) Cell cycle regulation and in vitro hybrid arrest analysis of the major human uracil-DNA glycosylase. Nucleic Acids Res. 19, 5131-5137.
33. Slupphaug, G., Markussen, F.-H., Olsen, L.C., Aasland, R., Aarsæther, B.O., Krokan, H.E. and Helland, D.E. (1993) Nuclear and mitochondrial forms of human uracil-DNA glycosylase are encoded by the same gene. Nucleic Acids Res. 21, 2579-2584.
34. Slupphaug, G., Eftedal, I., Kavli, B., Bharati, S., Helle, N.M., Haug, T., Levine, D.W. and Krokan, H.E. (1995) Properties of a recombinant human uracil-DNA glycosylase from the UNG gene and evidence that UNG encodes the major uracil-DNA glycosylase. Biochemistry 34, 128-138.
35. Tomilin, N.V. and Aprelikova, O.N. (1989) Uracil-DNA-glycosylases and DNA uracil repair. Int. Rev. Cyt. 114, 125-179.
36. Varshney, U., Hutcheon, T. and Van de Sande, J.H. (1988) Sequence analysis, expression, and conservation of Escherichia coli uracil DNA glycosylase and its gene (ung). J. Biol. Chem. 263, 7776-7784.
37. Weis, L. and Reinberg, D. (1992) Transcription by RNA polymerase II: initiator-directed formation of transcription-competent complexes. FASEB J. 6, 3300-3309.
38. Winkfein, R.J., Nishikawa, S., Connors, W. and Dixon, G.H. (1993) Characterization of a marsupial sperm protamine gene and its transcripts from the North American opossum (Didelphis marsupialis). Eur. J. Biochem. 215, 63-72.
39. 2-terminal amino acid sequence of uracil-DNA glycosylase from human placenta. Biochemistry 28, 780-784.