Solution structures of 5-fluorouracil-substituted RNA duplexes containing G-U wobble base pairs

Biochemistry

Volumn 36, Issue 20, 1997, Pages 5981-5991

  Sahasrabudhe, Parag V ^a   Gmeiner, William H ^a  

^a UNIVERSITY OF NEBRASKA MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE; FLUOROURACIL; GUANINE; RNA; SMALL NUCLEAR RNA; URIDINE;

ARTICLE; BASE PAIRING; GEOMETRY; NUCLEIC ACID BASE SUBSTITUTION; PRIORITY JOURNAL; RNA STRUCTURE;

ANTIMETABOLITES, ANTINEOPLASTIC; FLUOROURACIL; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOTION; NUCLEIC ACID CONFORMATION; PROTONS; REPRODUCIBILITY OF RESULTS; RNA, DOUBLE-STRANDED; RNA, SMALL NUCLEAR; THERMODYNAMICS;

EID: 0030971745     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9700577     Document Type: Article

References (51)

1. Arnott, S., & Hukins, D. W. L. (1972) Biochem. Biophys. Res. Commun. 47, 1504-1509.
2. Arnott, S., & Hukins, D. W. L. (1973) J. Mol. Biol. 81, 93-105.
3. Babcook, D. M., Sahasrabudhe, P. V., & Gmeiner, W. H. (1996) Magn. Reson. Chem. 34, 851-857.
4. Baleja, J. D., Pon, R. T., & Sykes, B. D. (1990) Biochemistry 29, 4828-4839.
5. Borer, P. N., Dengler, B., Tinoco, I., Jr., & Uhlenbeck, O. C. (1974) J. Mol. Biol. 86, 843-853.
6. Borgias, B. A., & James, T. L. (1988) J. Magn. Reson. 79, 493-512.
7. Borgias, B. A., & James, T. L. (1989) Two-dimensional nuclear Overhauser effect: complete relaxation matrix analysis, in Nuclear Magnetic Resonance, Part A: Spectral Techniques and Dynamics (Oppenheimer, N. J., & James, T. L., Eds.) Academic Press, New York.
8. Borgias, B. A., & James, T. L. (1990) J. Magn. Reson. 87, 475-487.
9. Chaudhuri, N. K., Montag, B. J., & Heidelberger, C. (1958) Cancer Res. 18, 318-328.
10. Cheng, Y., & Nakayama, K. (1983) Mol. Pharmacol. 23, 171-174.
11. Chou, S.-H., Flynn, P., & Reid, B. (1989) Biochemistry 28, 2422-2435.
12. Chou, S.-H., Cheng, J. W., & Reid, B. R. (1992) J. Mol. Biol. 228, 138-155.
13. Coll, M., Saal, D., Fredrick, C. A., Aymami, J., Rich, A., & Wang, A. H.-J. (1989) Nucleic Acids Res. 17, 911-923.
14. Daher, G. C., Harris, B. E., & Diasio, R. B. (1990) Pharmacol. Ther. 48, 189-222.
15. Doong, S.-L., & Dolnick, B. J. (1988) J. Biol. Chem. 263, 4467-4473.
16. Gmeiner, W. H., Anderson, J., & Sahasrabudhe, P. (1994a) Nucleosides Nucleotides 13, 2329-2344.
17. Gmeiner, W. H., Sahasrabudhe, P. V., & Pon, R. T. (1994b) J. Org. Chem. 59, 5779-5783.
18. Gronenborn, A. M., & Clore, G. M. (1989) Biochemistry 28, 5978-5984.
19. Harris, D. R., & Macintyre, W. M. (1964) Biophys. J. 4, 203-225.
20. Hore, P. J. (1983) J. Magn. Reson. 55, 283-300.
21. Houghton, J. A., Harwood, F. G., & Houghton, P. J. (1994) Cancer Res. 54, 4967-4973.
22. Hu, J., Xu, D., Schappert, K., Xu, Y. J., & Friesen, J. D. (1995) Mol. Cell. Biol. 15, 1274-1285.
23. Ingraham, H. A., Tseng, B. Y., & Goulian, M. (1980) Cancer Res. 40, 998-1001.
24. Lavery, R., & Sklenar, H. (1988) J. Biomol. Struct. Dyn. 6, 63-91.
25. Leroy, J. L., Kochoyan, M., Huynh-Dinh, T., & Gueron, M. (1988) J. Mol. Biol. 200, 223-228.
26. Mujeeb, A., Kerwin, S. M., Kenyon, G. L., & James, T. L. (1993) Biochemistry 32, 13419-13431.
27. Parker, W. B., & Cheng, Y. C. (1990) Pharmacol. Ther. 48, 381-395.
28. Pearlman, D. A., Case, D. A., Caldwell, J. W., Ross, W. S., Cheatham, T. E., III, Ferguson, D. M., Seibel, G. L., Singh, U. C., Weiner, P., & Kollman, P. (1995) AMBER 4.1.
29. Petersheim, M., & Turner, D. H. (1983) Biochemistry 22, 256-263.
30. Pratt, W. B., Ruddon, R. W., Ensminger, W. D., & Maybaum, J. (1994) The Anticancer Drugs, Oxford University Press, New York.
31. Ravishanker, G., Swaminathan, S., Beveridge, D. L., Lavery, R., & Sklenar, H. (1989) J. Biomol. Struct. Dyn. 6, 669-699.
32. Ryckaert, J. P., Cicotti, G., & Berendsen, H. J. C. (1977) J. Comput. Phys. 23, 327-341.
33. Saenger, W. (1984) Principles of Nucleic Acid Structure, Springer-Verlag, New York.
34. Sahasrabudhe, P. V., Pon, R. T., & Gmeiner, W. H. (1995) Nucleic Acids Res. 23, 3916-3921.
35. Sahasrabudhe, P. V., Pon, R. T., & Gmeiner, W. H. (1996) Biochemistry 35, 13597-13608.
36. Santa Lucia, J., Jr., & Turner, D. H. (1993) Biochemistry 32, 12612-12623.
37. Santi, D. V., McHenry, C. S., & Sommer, H. (1974) Biochemistry 13, 471-480.
38. Schmitz, U., Sethson, I., Egan, W., & James, T. L. (1992) J. Mol. Biol. 227, 510-531.
39. Schuetz, J. D., Collins, J. M., Wallace, H. J., & Diasio, R. B. (1986) Cancer Res. 46, 119-123.
40. Scmittgen, T. D., Danenberg, K. D., Horikoshi, T., Lenz, H.-J., & Danenberg, P. V. (1994) J. Biol. Chem. 269, 16269-16275.
41. Singh, U. C., Weiner, S. J., & Kollman, P. (1985) Proc. Natl. Acad. Sci. U.S.A. 82, 755-759.
42. Sowers, L. C., Eritja, R., Kaplan, B., Goodman, M. F., & Fazakerley, G. V. (1988) J. Biol. Chem. 263, 14794-14801.
43. Spiegelman, S., Nayak, R., Sawyer, R., Stolfi, R., & Martin, D. (1980) Cancer 45, 1129-1134.
44. States, D. J., Haberkorn, R. A., & Ruben, D. J. (1982) J. Magn. Reson. 48, 286-292.
45. Stolarski, R., Egan, W., & James, T. L. (1992) Biochemistry 31, 7027-7042.
46. Suzuki, E., Pattabiraman, N., Zon, G., & James, T. L. (1986) Biochemistry 25, 6854-6865.
47. Tanaka, M., Yoshida, S., Saneyoshi, M., & Yamaguchi, T. (1981) Cancer Res. 41, 4132-4135.
48. Van Knippenberg, P. H., Formenoy, L. J., & Heus, H. A. (1990) Biochim. Biophys. Acta 1050, 14-17.
49. Weckbecker, G. (1991) Pharmacol. Ther. 50, 367-424.
50. Wilkinson, D. S., & Pitot, H. C. (1973) J. Biol. Chem. 248, 63-68.
51. Wu, M., & Turner, D. H. (1996) Biochemistry 35, 9677-9689.