Adsorption of peptide nucleic acid and DNA decamers at electrically charged surfaces

Biophysical Journal

Volumn 72, Issue 5, 1997, Pages 2285-2293

  Fojta, M ^a   Vetterl, V ^a,d   Tomschik, M ^a,d   Jelen, F ^a   Nielsen, P ^b   Wang, J ^c   Palecek E ^a  

^a INSTITUTE OF BIOPHYSICS   (Czech Republic)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

^c NEW MEXICO STATE UNIVERSITY   (United States)

^d MASARYK UNIVERSITY   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; PEPTIDE NUCLEIC ACID;

ADSORPTION; ARTICLE; ELECTRIC POTENTIAL; ELECTRODE; IMPEDANCE;

EID: 0030947033     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(97)78873-8     Document Type: Article

References (47)

1. Andrade, J. D., and V. Hladky. 1986. Protein adsorption and materials biocompatibility: a tutorial review and suggested hypothesis. Adv. Polym. Sci. 79:1-63.
2. Bard, A. J., and L. R. Faulkner. 1980. Electrochemical Methods. Fundamentals and Applications. John Wiley and Sons, New York.
3. Brabec, V., and E. Paleček. 1972. Adsorption of single-stranded and double-helical polynucleotides on the mercury electrode. Biopolymers. 11:2577-2589.
4. Brabec, V., V. Vetterl, V. Kleinwachter, and J. Reedijk. 1989. Interfacial behaviour of trideoxyribonucleotide d(CpGpCp) and its complex with the antitumour drug cis platin at the mercury/electrolyte solution interface. Bioelectrochem. Bioenerg. 21:199-204.
5. Brabec, V., V. Vetterl, and O. Vrána. 1996. Electroanalysis of biomacromolecules. In Experimental Techniques in Bioelectrochemistry. Birkhauser Verlag, Basel. 288-359.
6. Breyer, B., and H. H. Bauer. 1963. Alternating Current Polarography and Tensammetry. John Wiley and Sons, New York.
7. Cai, X., G. Rivas, H. Shiraishi, P. A. M. Farias, J. Wang, M. Tomschik, F. Jelen, and E. Paleček. 1997. Electrochemical analysis of formation of polynucleotide complexes in solution and at electrode surfaces. Anal. Chim. Acta. (in press).
8. Christensen, L., R. Fitzpatrick, B. Gildea, K. H. Petersen, H. F. Hansen, T. Koch, M. Egholm, O. Buchardt, P. Nielsen, J. Coull, and R. H. Berg. 1995. Solid-phase synthesis of peptide nucleic acid (PNA). J. Peptide Sci. 3:175-183.
9. Clemmer, C. R., and T. P. Beebe. 1992. A review of graphite and gold surface studies for use as substrates in biological scanning tunneling microscopy studies. Scanning Microsc. 6:319-333.
10. Delahay, P. 1965. Double Layer and Electrode Kinetics. John Wiley and Sons, London.
11. Egholm, M., O. Buchardt, L. Christensen, C. Behrens, S. M. Freier, D. A. Driver, R. H. Berg, S. K. Kim, B. Norden, and P. E. Nielsen. 1993. PNA hybridizes to complementary oligonucleotides obeying the Watson-Crick hydrogen bonding system. Nature. 365:566-568.
12. Frumkin, A. N. 1964. Adsorption of organic compounds at electrodes. In Modern Aspects of Electrochemistry. Butterworths, London. 149-223.
13. Grahame, D. C., M. A. Poth, and J. I. Cummings. 1951. Thermodynamic properties of the electrical double-layer. In Thermodynamical Properties of the Electrical Double Layer. Technical report no. 7 to the Office of Naval Research. Department of Chemistry, Amherst College, Amherst, MA. 1-12.
14. Hangsma, H. G., I. Revenko, K. Kim, and D. E. Laney. 1996. Atomic force microscopy of long and short double-stranded, single-stranded and triple-stranded nucleic acids. Nucleic Acids Res. 24:713-720.
15. Haynes, C. A., and W. Norde. 1994. Globular proteins at solid/liquid interfaces. J. Colloids Surfaces B. 2:517-526.
16. Hyrup, B., and P. E. Nielsen. 1996. Peptide nucleic acid. Synthesis, properties and potential applications. Bioorg. Biomed. Chem. 4:5-23.
17. Jehring, H. 1974. Elektrosorptionsanalyse mit der Wechselstrom-Polarographie. Akademie-Verlag, Berlin.
18. Jelen, F., and E. Paleček. 1985. Nucleotide sequence-dependent opening of double-stranded DNA at an electrically charged surface. Gen. Physiol. Biophys. 4:219-237.
19. Johnston, D. H., K. C. Glasgow, and H. H. Thorp. 1995. Electrochemical measurement of the solvent accessibility of nucleobases using electron transfer between DNA and metal complexes. J. Am. Chem. Soc. 117: 8933-8938.
20. Kaisheva, M. K., M. Matsumoto, Y. Kita, and T. Takenaka. 1988. Adsorption of transfer ribonucleic acid on a stationary mercury electrode. Langmuir. 4:762-765.
21. Lilley, D. M. J. 1985. The kinetic properties of cruciform extrusion are determined by DNA base-sequence. Nucleic Acids Res. 13:1443-1465.
22. MacRitchie. 1978. Proteins at interfaces. Adv. Protein Chem. 32:283-326.
23. Magnussen, O. M., B. M. Ocko, M. Deutsch, M. J. Regan, P. S. Parshan, D. Abernathy, G. Grübel, and J.-F. Legrand. 1996. Self-assembly of organic films on a liquid metal. Nature. 384:250-252.
24. Mikkelsen, S. R. 1996. Electrochemical biosensors for DNA sequence detections. Electroanalysis. 8:15-19.
25. Miller, I. R. 1961. Temperature dependence of the adsorption of native DNA in a polarized water-mercury interface. J. Mol. Biol. 3:357-361.
26. Miller, I. R., and Grahame, D. C. 1956. Interaction of undissociated polymethacrylic acid and polylysine with the electrical double-layer on a mercury surface. J. Am. Chem. Soc. 78:3577-3585.
27. Miller, I. R., and Grahame, D. C. 1957. Interaction of polyelectrolytes with the electrical double-layer on mercury-water interfaces. II. Influence of added ionized polyacids on the differential capacity. J. Am. Chem. Soc. 79:3006-3012.
28. Nielsen, P. E., M. Egholm, R. H. Berg, and O. Buchardt. 1991. Sequence selective recognition of DNA by strand displacement with a thymine substituted polyamide. Science. 254:1497-1500.
29. Paleček, E. 1983. Modem polarographic (voltammetric) methods in biochemistry and molecular biology. Part II. Analysis of macromolecules. In Topics in Bioelectrochemistry and Bioenergetics. J. Wiley, London. 65-155.
30. Paleček, E. 1986. Electrochemical behaviour of biological macromolecules. Bioelectrochem. Bioenerg. 15:275-295.
31. Paleček, E. 1988. New trends in electrochemical analysis of nucleic acids. Bioelectrochem. Bioenerg. 20:171-194.
32. Paleček, E. 1996. From polarography of DNA to microanalysis with nucleic acid-modified electrodes. Electroanalysis. 8:7-14.
33. Paleček, E., and M. Fojta. 1994. Differential pulse voltammetric determination of RNA at picomole level in the presence of DNA and nucleic acid components. Anal. Chem. 66:1566-1571.
34. Paleček, E., F. Jelen, C. Teijeiro, V. Fučík, and T. M. Jovin. 1993. Biopolymer-modified electrodes. Voltammetric analysis of nucleic acids and proteins at the submicrogram level. Anal. Chim. Acta. 273:175-186.
35. Paleček, E., V. Kolář, F. Jelen, and U. Heinemann. 1990. Electrochemical analysis of the self-complementary B-DNA decamer d(CCAGGCCTGG). Bioelectrochem. Bioenerg. 23:285-299.
36. Paleček, E., and I. Postbieglová. 1986. Adsorptive stripping voltammetry of biomacromolecules with transfer of the adsorbed layer. J. Electroanal. Chem. 214:359-371.
37. Ramsden, J. J. 1993. Experimental methods for investigating protein adsorption kinetics at surfaces. Q. Rev. Biophys. 27:41-105.
38. Ramsden, J. J. 1995. Puzzles and paradoxes in protein adsorption. Chem. Soc. Rev. :73-78.
39. Retter, U., V. Vetterl, and J. Jursa. 1989. On the stability of condensed adsorption films. J. Electroanal. Chem. 274:1-9.
40. Sambrook, J., E. F. Frisch, and T. Maniatis. 1989. Molecular Cloning. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
41. Teijeiro, C., K. Nejedlý, and E. Paleček. 1993. Cyclic voltammetry of submicrogram quantities of supercoiled, linear and denatured DNAs with DNA-modified mercury electrode. J. Biomol. Struct. Dyn. 11: 313-331.
42. Vetterl, V. 1965. Adsorption of DNA components on the mercury electrode. Experientia. 21:9-11.
43. Vetterl, V. 1966. Differentielle Kapazität der elektrolytischen Doppelschicht in Anwesenheit einiger Purin und Pyrimidinderivate. Collect. Czech. Chem. Commun. 31:2105-2126.
44. Vetterl, V. 1968. Alternating current polarography of nucleosides. J. Electroanal. Chem. 19:169-173.
45. Vetterl, V., and R. de Levie. 1991. The effect of halide ions on the condensation of adenine at the mercury-water interface. J. Electroanal. Chem. 310:305-315.
46. Wang, J., E. Paleček, P. E. Nielsen, G. Rivas, X. H. Cai, H. Shiraishi, N. Dontha, D. B. Luo, and P. A. M. Farias. 1996. Peptide nucleic acid probes for sequence-specific DNA biosensors. J. Am. Chem. Soc. 118: 7667-7670.
47. Xu, X.-H., and A. J. Bard. 1995. Immobilization and hybridization of DNA on an aluminum(III) alkanebisphosphonate thin film with electrogenerated chemiluminiscent detection. J. Am. Chem. Soc. 117:2626-2631.