Evolutionary features of the 4-Mb Xq21.3 XY homology region revealed by a map at 60-kb resolution

Genome Research

Volumn 7, Issue 4, 1997, Pages 307-314

  Mumm, Steven ^a,b   Molini, Barbara ^a   Terrell, Jennifer ^a   Srivastava, Anand ^a,c   Schlessinger, David ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b BARNES JEWISH HOSPITAL   (United States)

^c GREENWOOD GENETIC CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG;

ARTICLE; CHROMOSOME MARKER; CHROMOSOME XQ; CHROMOSOME YP; DNA SEQUENCE; EVOLUTION; GENE MAPPING; GENETIC DISTANCE; HUMAN; PARACENTRIC CHROMOSOME INVERSION; PLASMID; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; Y CHROMOSOME; YEAST ARTIFICIAL CHROMOSOME;

EID: 0030939475     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.7.4.307     Document Type: Article

References (23)

1. Affara, N.A. and M.A. Ferguson-Smith. 1994. DNA sequence homology between the human sex chromosomes. In Molecular genetics of sex determination (ed. S.S. Wachtel), Chap. 11, p. 225. Academic Press, San Diego, CA.
2. Albertsen, H.M., H. Abderrahim, H.M. Cann, J. Dausset, D. LePaslier, and D. Cohen. 1990. Construction and characterization of a yeast artificial chromosome library containing seven haploid human genome equivalents. Proc. Natl. Acad. Sci. 87: 4256-4260.
3. Blanchard, M.M., P. Taillon-Miller, P. Nowotny, and V. Nowotny. 1993. PCR buffer optimization with uniform temperature regimen to facilitate automation. PCR Methods Applic. 2: 234-240.
4. Foote, S., D. Volirath, A. Hilton, and D.C. Page. 1992. The human Y chromosome: Overlapping DNA clones spanning the euchromatic region. Science 258: 60-66.
5. Forabosco, A., L. Giorgi, A. Formica, E. Tarantino, and B. Dallapiccola. 1979. Ovarian dysfunction in balanced X-autosome translocations: Report of two cases involving band XCq21. Ann. Genet. 22: 11-16.
6. Forbes, S.A., L. Brennan, M. Richardson, A. Coffey, D.R. Bentley, S. Mumm, G.E. Moore, and P. Stanier. 1996. Refined mapping and YAC contig cloning of the X-linked cleft palate and ankyloglossia locus (CPX) including the proxima X-Y homology breakpoint within Xq21.3. Genomics 31: 36-43.
7. Geldwerth, D., C. Bishop, G. Guellaën, M. Koenig, G. Vergnaud, J.-L. Mandel, and J. Weissenbach. 1985. Extensive DNA sequence homologies between the human Y and the long arm of the X chromosome. EMBO J. 4: 1739-1743.
8. Hillier, L. and P. Green. 1991. OSP: A computer program for choosing PCR and DNA sequencing primers. PCR Methods Applic. 1: 124-128.
9. Jones, M.H., O.S.A. Khwaja, H. Briggs, B. Lambson, P.M. Davey, J. Chalmers, C.-Y. Zhou, E.M. Walker, Y. Zhang, C. Todd, M.A. Ferguson-Smith, and N.A. Affara. 1994. A set of ninety-seven overlapping yeast artificial chromosome clones spanning the human Y chromosome euchromatin. Genomics 24: 266-275.
10. Jurka, J., P. Klonowski, V. Dagman, and P. Pelton. 1996. CENSOR - A program for identification and elimination of repetitive elements from DNA sequences. Comput. & Chem. 20: 119-121.
11. Kere, J., R. Nagaraja, S. Mumm, A. Ciccodicola, M. D'Urso, and D. Schlessinger. 1992. Mapping human chromosomes by walking with sequence-tagged sites from end-fragments of yeast artificial chromosome inserts. Genomics 14: 241-248.
12. Koenig, M., J.P. Moisan, R. Heilig, and J.L. Mandel. 1985. Homologies between X and Y chromosomes detected by DNA probes: Localisation and evolution. Nucleic Acids Res. 13: 5485-5501.
13. Lee, J.T., A. Murgia, D.M. Sosnoski, I.M. Olivos, and R.L. Nussbaum. 1992. Construction and characterization of a yeast artificial chromosome library for Xpter-Xq27.3; a systematic determination of cocloning rate and X-chromosome representation. Genomics 12: 526-533.
14. Nagaraja, R., J. Kere, S. MacMillan, M.W.J. Masisi, D. Johnson, G. Halley, B.A. Molini, K. Wein, M. Trusgnich, B. Ebel, B.H. Brownstein, B. Railey, and D. Schlessinger. 1994. Characterization of four human YAC libraries for clone size, chimerism, and X chromosome sequence representation. Nucleic Acids Res, 22: 3406-3411.
15. Page, D.C., M.E. Harper, J. Love, and D. Botstein. 1984. Occurrence of a transposition from the X-chromosome long arm to the Y-chromosome short arm during human evolution. Nature 311: 119-123.
16. Philippe, C., F.P.M. Cremers, M. Chery, I. Bach, N. Abbadi, H.H. Ropers, and S. Gilgenkrantz. 1993. Physical mapping of DNA markers in the q13-q22 region of the human X chromosome. Genomics 17: 147-152.
17. Riley, J., R. Butler, D. Ogilvie, R. Finniear, D. Jenner, S. Powell, R. Anand, J.C. Smith, and A.F. Markham. 1990. A 3.5 genome equivalent multi access YAC library: Construction, characterisation, screening and storage. Nucleic Acids Res. 18: 2887-2890.
18. Sargent, C.A., H. Briggs, I.J. Chalmers, B. Lambson, E. Walker, and N.A. Affara. 1996. The sequence organization of Yp/proximal Xq homologous regions of the human sex chromosomes is highly conserved. Genomics 32: 200-209.
19. Srivastava, A.K., V. Montanaro, and J. Kere. 1992. Simplified template preparation and improved direct sequencing using Taq polymerase. PCR Methods Applic. 1: 255-256.
20. Stanier, P., R. Newton, S.A. Forbes, A. Ivens, and G.E. Moore. 1991. Polymorphic dinucleotide repeat at the DXS3 locus. Nucleic Acids Res. 19: 4793.
21. Vetrie, D., E. Kendall, A. Coffey, S. Hassock, J. Collins, C. Todd, H. Lehrach, M. Bobrow, D.R. Bentley, and A. Harris. 1994. A 6.5 Mb yeast artificial chromosome contig incorporating 33 DNA markers on the human X chromosome at Xq22. Genomics 19: 42-47.
22. Vollrath, D., S. Foote, A. Hilton, L.G. Brown, P. Beer-Romero, J.S. Bogan, and D.C. Page. 1992. The human Y chromosome: A 43-interval map based on naturally occurring deletions. Science 258: 52-59.
23. Zinn, A.R., D.C. Page, and E.M.C. Fisher. 1993. Turner syndrome: The case of the missing sex chromosome. Trends Genet. 9: 90-93.