Refined mapping and YAC contig construction of the X-linked cleft palate and ankyloglossia locus (CPX) including the proximal X-Y homology breakpoint within Xq21.3

Genomics

Volumn 31, Issue 1, 1996, Pages 36-43

  Forbes, Simon A ^a   Brennan, Lyndall ^a   Richardson, Michael ^a   Coffey, Alison ^b   Cole, Charlotte G ^b   Gregory, Simon G ^b   Bentley, David R ^b   Mumm, Steven ^c   Moore, Gudrun E ^a   Stanier, Philip ^a  

^a QUEEN CHARLOTTE S AND CHELSEA HOSPITAL   (United Kingdom)

^b WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^c WASHINGTON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; CHROMOSOME XQ; CLEFT PALATE; DNA SEQUENCE; GENE; HUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION MAPPING; SEQUENCE TAGGED SITE; TONGUE DISEASE; X CHROMOSOME LINKED DISORDER; Y CHROMOSOME; YEAST ARTIFICIAL CHROMOSOME;

EID: 0030064383     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1996.0006     Document Type: Article

References (40)

1. Albertsen, A. H. M., Aberrahim, H., Cann, H. M., Dausset, J., Le Paslier, D., and Cohen, D. (1990). Construction and characterisation of a yeast artificial chromosome library containing seven haploid human genome equivalents. Proc. Natl. Acad. Sci. USA 87: 4256-4260.
2. Anand, R., Villasante, A., and Tyler-Smith, C. (1989). Construction of yeast artificial chromosome libraries with large inserts using fractionation by pulsed field gel electrophoresis. Nucleic Acids Res. 17: 3425-3433.
3. Barker, D. F., and Fain, P. R. (1993). Definition and mapping of STSs and RFLP loci in Xp11-q22. Genomics 18: 712-716.
4. Bentley, D. R., Todd, C., Collins, J., Holland, J., Dunham, I., Hassock, S., Bankier, A., and Giannelli, F. (1992). The development and application of automated gridding for efficient screening of yeast and bacterial ordered libraries. Genomics 12: 534-541.
5. Bixler, D. (1987). Letter to the editor: X-linked cleft palate. Am. J. Med. Genet. 28: 503-505.
6. Bjornsson, A., Arnason, A., and Tippet, P. (1989). X-linked midline defect in an Icelandic family. Cleft Palate J. 26: 3-8.
7. Browne, D. L., Zonana, M., and Litt, M. (1991). Dinucleotide repeat polymorphism at the DXYS1X locus. Nucleic Acids Res. 19: 1721.
8. Burke, D. T., Carle, G. F., and Olsen, M. V. (1987). Cloning of large segments of exogenous DNA into yeast by means of artificial chromosome vectors. Science 236: 806-812.
9. Coffey, A. J., Roberts, R. G., Green, E. D., Cole, C. G., Butler, R., Anand, R., Giannelli, F., and Bentley, D. R. (1992). Construction of a 2.6 Mb contig in yeast artificial chromosomes spanning the human dystrophin gene using an STS-based approach. Genomics 12: 474-484.
10. Coffey, A. J., Gregory, S., and Cole, C. (1995). Alu-PCR fingerprinting of yeast artificial chromosomes. In "Protocols for Yeast Artificial Chromosomes" (D. Marhie, Ed.), Humana Press Inc., in press.
11. Cole, C. G., Goodfellow, P. N., Bobrow, M., and Bentley, D. R. (1991). Generation of novel sequence tagged sites (STSs) from discrete chromosomal regions using Alu-PCR. Genomics 10: 816-826.
12. Craig, J. M., and Bickmore, W. A. (1993). Chromosome bands - Flavours to savour. BioEssays 15: 349-354.
13. Cremers, F. P. M., van de Pol, D. J. R., Wieringa, B., Nussbaum, R. L., Schwartz, M., and Ropers, H. H. (1989). Physical fine mapping of the choroideremia locus using Xq21 deletions associated with complex syndromes. Genomics 4: 41-46.
14. Feinberg, A. P., and Vogelstein, B. (1983). A technique for radiolabelling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132: 6-13.
15. Forbes, S. A., Richardson, M., Brennan, L., Arnason, A., Bjornsson, A., Campbell, L., Moore, G. E., and Stanier, P. (1995). Refinement of the X-linked cleft palate and ankyloglossia (CPX) localisation by genetic mapping in an Icelandic kindred. Hum. Genet. 95: 342-346.
16. Fraser, F. C. (1980). The genetics of cleft lip and palate: Yet another look. In "Current Research Trends in Prenatal Craniofacial Development" (R. M. Pratt and K. L. Christiansen, Eds.), pp. 357-366, Elsevier, New York.
17. Gorski, S. M., Adams, K. J., Birch, P. H., Friedman, J. M., and Goodfellow, P. J. (1992). The gene responsible for X-linked cleft palate (CPX) in a British Columbian native kindred is localized between PGK1 and DXYS1. Am. J. Med. Genet. 50: 1129-1136.
18. Gorski, S. M., Adams, K. J., Birch, P. H., Chodirker, B. N., Greenberg, C. R., and Goodfellow, P. J. (1994). Linkage analysis of X-linked cleft palate and ankyloglossia in Manitoba Menonite and British Columbia Native kindreds. Hum. Genet. 94: 141-148.
19. Green, E. D., and Olson, M. V. (1990). Systematic screening of yeast artificial chromosome libraries using the polymerase chain reaction. Proc. Natl. Acad. Sci. USA 87: 1213-1217.
20. Gyapay, G., Morissette, J., Vignal, A., Dib, C., Fizames, C., Millasseau, P., Marc, S., Bernardi, G., Lathrop, M., and Weissenbach, J. (1994). The 1993-94 Généthon human genetic linkage map. Nature Genet. 7: 242-339.
21. Hall, B. D. (1987). Letter to the editor: A further X-linked isolated nonsyndromic cleft palate family with a nonexpressing obligate affected male. Am. J. Med. Genet. 26: 239-240.
22. Kendall, E., Sargent, C. A., and Campbell, R. D. (1990). Human major histocompatibility complex contains a new cluster of genes between the HLA-D and complement C4 loci. Nucleic Acids Res. 18: 7251-7257.
23. Lambson, B., Affara, N. A., Mitchell, M., and Ferguson-Smith, M. A. (1992). Evolution of DNA sequence homologies between the sex chromosomes in primate species. Genomics 14: 1032-1040.
24. Larin, Z., Monaco, A. P., and Lehrach, H. (1991). Yeast artificial chromosome libraries containing large inserts from mouse and human DNA. Proc. Natl. Acad. Sci. USA 88: 3233-3237.
25. Larsen, F., Gundersen, G., and Prydz, H. (1992). Choice of enzymes for mapping based on CpG islands in the human genome. Genet. Anal. Tech. Appl. 9: 80-85.
26. Leek, I. (1984). The geographical distribution of neural tube defects and oral clefts. Br. Med. Bull. 40: 390-395.
27. Lee, J. T., Murgia, A., Sosnoski, D. M., Olivos, I. M., and Nussbaum, R. L. (1992). Construction and characterization of a yeast artificial chromosome library for Xpter-Xq27.3: A systematic determination of cocloning rate and chromosome representation. Genomics 12: 526-533.
28. Lowry, R. B. (1970). Sex linked cleft palate in a British Columbian Indian family. Pediatrics 46: 123-128.
29. Maestrini, E., Tamanini, F., Kioschis, P., Gimbo, E., Marinelli, P., Tribioli, C., D'Urso, M., Palmieri, G., Poustka, A., and Toniolo, D. (1992). An archipelago of CpG islands in Xq28: Identification and fine mapping of 20 new CpG islands of the human X chromosome. Hum. Mol. Genet. 1: 275-280.
30. Moore, G. E., Ivens, A., Chambers, J., Farrall, M., Williamson, R., Page, D. C., Bjornsson, A., Arnason, A., and Jensson, O. (1987). Linkage of an X-chromosome cleft palate gene. Nature 326: 91-92.
31. Nagaraja, R., Kere, J., MacMillan, S., Masisi, M. W. J., Johnson, D., Molini, B. J., Halley, G. R., Wein, K., Trusgnich, M., Eble, B., Railey, B., Brownstein, B. H., and Schlessinger, D. (1994). Characterization of four human YAC libraries for clone size, chimerism, and X chromosome sequence representation. Nucleic Acids Res. 22: 2406-2411.
32. Nizetic, D., Zehetner, G., Monaco, A. P., Gellen, L., Young, B. D., and Lehrach, H. (1991). Construction, arraying, and high-density screening of large insert libraries of human chromosomes X and 21: Their potential use as reference libraries. Proc. Natl. Acad. Sci. USA 88: 3233-3237.
33. Page, D. C., Harper, M. E., Love, J., and Botstein, D. (1984). Occurrence of a transposition from the X-chromosome long arm to the Y-chromosome short arm during human evolution. Nature 311: 119-123.
34. Riley, J., Butler, R., Ogilvie, D., Finniear, R., Jenner, D., Powell, S., Anand, R., Smith, J. C., and Markham, A. F. (1990). A novel, rapid method for the isolation of terminal sequences from yeast artificial chromosome (YAC) clones. Nucleic Acids Res. 18: 2887-2890.
35. Rollnick, B. R., and Kaye, C. I. (1986). Mendelian inheritance of isolated nonsyndromic cleft palate. Am. J. Med. Genet. 24: 465-473.
36. Rushton, A. R. (1979). Sex linked inheritance of cleft palate. Hum. Genet. 48: 179-181.
37. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989). "Molecular Cloning. A Laboratory Manual," 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
38. Stanier, P., Forbes, S. A., Arnason, A., Bjornsson, A., Sveinbjornsdottir, E., Williamson, R., and Moore, G. E. (1993). The localization of a gene causing X-linked cleft palate and ankyloglossia (CPX) in an Icelandic kindred is between DXS326 and DXYS1X. Genomics 17: 549-555.
39. Vollrath, D., Foote, S., Hilton, A., Brown, L. G., Beer-Romero, P., Bogan, J. S., and Page, D. C. (1992). The human Y chromosome: A 43-interval map based on naturally occuring deletions. Science 258: 52-59.
40. Williamson, R., Bowcock, A., Kidd, K., Pearson, P., Schmidtke, J., Ceverha, P., Chipperfield, M., Cooper, N., Coutelle, C., Hewitt, J., Klinger, K., Langley, K., Beckmann, J., Tolley, M., and Maidak, B. (1991). Report of the DNA committee and catalogues of cloned and mapped genes, markers formatted for PCR and DNA polymorphisms. Cytogenet. Cell Genet. 58: 1624-1658.