Structural studies of malate dehydrogenases (MDHs): MDHs in Brevundimonas species are the first reported MDHs in Proteobacteria which resemble lactate dehydrogenases in primary structure

Journal of Bacteriology

Volumn 179, Issue 12, 1997, Pages 4066-4070

  Charnock, Colin ^a  

^a UNIVERSITY OF OSLO   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

LACTATE DEHYDROGENASE; MALATE DEHYDROGENASE; NICOTINAMIDE ADENINE DINUCLEOTIDE;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIUM; ENZYME ANALYSIS; NONHUMAN; PEPTIDE MAPPING; PRIORITY JOURNAL; PROTEIN ANALYSIS;

BACTERIA (MICROORGANISMS); BREVUNDIMONAS; PROTEOBACTERIA;

EID: 0030918792     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.179.12.4066-4070.1997     Document Type: Article

References (40)

1. Cendrin, F., J. Chroboczek, G. Eisenberg, and M. Mevarech. 1993. Cloning, sequencing, and expression in Escherichia coli of the gene coding for malate dehydrogenase of the extremely halophilic archaebacterium Haloarcula marismortui. Biochemistry 32:4308-4313.
2. Charnock, C., U. H. Refseth, and R. Sirevåg. 1992. Malate dehydrogenase from Chlorobium vibrioforme, Chlorobium tepidum, and Heliobacterium gestii: purification, characterization, and investigation of dinucleotide binding by dehydrogenases by use of empirical methods of protein sequence analysis. J. Bacteriol. 174:1307-1313.
3. Charnock, C., and T. Bergan. 1992. Multilocus enzyme electrophoresis of major O-antigen reference strains of Pseudomonas aeruginosa. Eur. J. Clin. Microbiol. Infect. Dis. 11:810-816.
4. De Ley, J., J. Segers, K. Kersters, W. Mannehim, and A. Lievens. 1986. Intra-and intergeneric similarities of the Bordetella ribosomal ribonucleic acid cistrons: proposal for a new family, Alcaligenaceae. Int. J. Syst. Bacteriol. 36:405-414.
5. Denny, P. D., M. N. Gilmour, and R. K. Selander. 1988. Genetic diversity and relationships of two pathovars of Pseudomonas syringae. J. Gen. Microbiol. 134:1949-1960.
6. Edman, P. 1950. Method for determination of the amino acid sequence in peptides. Acta Chem. Scand. 4:283-293.
7. Evans, M. C. W., B. B. Buchanan, and D. I. Arnom. 1966. A new ferredoxin dependent carbon reduction cycle in a photosynthetic bacterium. Proc. Natl. Acad. Sci. USA 55:1420-1425.
8. Francis, M. J. O., D. E. Hughes, H. L. Kornberg, and P. J. R. Phizackerley. 1963. The oxidation of L-malate by Pseudomonas spp. Biochem. J. 89:430-438.
9. Gooderham, K. 1984. Peptide mapping, p. 193-202. In J. M. Walker (ed.), Methods in molecular biology, vol. 1. Proteins. Humana Press, Clifton, N.J.
10. Goward, C. R., and D. J. Nicholls. 1994. Malate dehydrogenase: a model for structure, evolution and catalysis. Protein Sci. 3:1883-1888.
11. Grimes, D. J., C. R. Woese, M. T. MacDonell, and R. R. Colwell. 1997. Systematic study of the genus Vogesella gen. nov. and its type species, Vogesella indigofera comb. nov. Int. J. Syst. Bacteriol. 47:19-27.
12. Hugh, R., and G. L. Gilardi. 1964. The proposed neotype strain of Pseudomonas alcaligenes Monias (1928). Int. Bull. Bacteriol. Nomencl. Taxon. 14: 103-107.
13. Jin, S., M. De Jesús-Berrios, and A. L. Sonenshein. 1996. A Bacillus subtilis malate dehydrogenase gene. J. Bacteriol. 178:560-563.
14. Kiredjian, M., B. Holmes, K. Kersters, I. Guilvout, and J. De Ley. 1986. Alcaligenes piechaudii, a new species from human clinical specimens and the environment. Int. J. Syst. Bacteriol. 36:282-287.
15. Levin, M. H., R. A. Weinstein, C. Nathan, R. K. Selander, H. Ochman, and S. A. Kabins. 1984. Association of infection caused by Pseudomonas aeruginosa serotype O11 with intravenous abuse of pentazocine mixed with tripelennamine. J. Clin. Microbiol. 20:758-762.
16. Lu, C. D., and A. T. Abdelal. 1993. Complete sequence of the Salmonella typhimurium gene encoding malate dehydrogenase. Gene 123:143-144.
17. McAllister-Henn, L. 1988. Evolutionary relationships among the malate dehydrogenases. Trends Biochem. Sci. 13:178-181.
18. Migula, W. 1894. Ueber ein neues System der Bakterien. Arb. Bakteriol. Inst. Karlsruhe 1:235-238.
19. Naterstad, K., V. Lauvrak, and R. Sirevåg. 1996. Malate dehydrogenase from the mesophile Chlorobium vibrioforme and the mild thermophile Chlorobium tepidum: molecular cloning, construction of a hybrid, and expression in Escherichia coli. J. Bacteriol. 178:7047-7052.
20. Palleroni, N. J., R. Kunisawa, R. Contopoulou, and M. Doudoroff. 1973. Nucleic acid homologies in the genus Pseudomonas. Int. J. Syst. Bacteriol. 23:333-339.
21. Palleroni, N. J., and J. F. Bradbury. 1993. Stenotrophomonas, a new bacterial genus for Xanthomonas maltophila (Hugh 1980) Swings et al. 1983. Int. J. Syst. Bacteriol. 43:606-609.
22. AL, p. 141-199. In N. R. Krieg and J. G. Holt (ed.), Bergey's manual of systematic bacteriology, vol. 1. Williams & Wilkins, Baltimore, Md.
23. Phizackerley, P. J. R. 1969. Malate dehydrogenase (FAD-linked) from Pseudomonas ovalis Chester, p. 135-140. In J. M. Lowenstein (ed.), Methods in enzymology, vol. XIII. Academic Press, New York, N.Y.
24. Riesner, D., K. Henco, and G. Steger. 1991. Temperature-gradient gel electrophoresis: a method for the analysis of conformational transitions and mutations in nucleic acids and proteins, p. 171-250. In A. Chrambach, M. J. Dunn, and B. J. Radola (ed.), Advances in electrophoresis, vol. 4. VCH, Weinheim, Federal Republic of Germany.
25. Rolstad, A. K., E. Howland, and R. Sirevåg. 1988. Malate dehydrogenase from the thermophilic green bacterium Chloroflexus aurantiacus: purification, molecular weight, amino acid composition, and partial amino acid sequence. J. Bacteriol. 170:2947-2953.
26. Rommel, T. O., H.-K. Hund, A. R. Speth, and F. Lingens. 1989. Purification and N-terminal amino acid sequences of bacterial malate dehydrogenases from six actinomycetales strains and from Phenylobacterium immobile, strain E. Biol. Chem. Hoppe-Seyler 370:763-768.
27. Segers, P., M. Vancanneyt, B. Pot, U. Torck, B. Hoste, D. Dewettinck, E. Falsen, K. Kersters, and P. De Vos. 1994. Classification of Pseudomonas diminuta Leifson and Hugh 1954 and Pseudomonas vesicularis Büsing, Döll, and Freytag 1953 in Brevundimonas gen. nov. as Brevundimonas diminuta comb. nov. and Brevundimonas vesicularis comb. nov., respectively. Int. J. Syst. Bacteriol. 44:499-510.
28. Selander, R. K., D. A. Caugant, H. Ochman, J. M. Musser, M. N. Gilmour, T. S. Whittam. 1986. Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematics. Appl. Environ. Microbiol. 51:873-884.
29. Stanier, R. Y., I. C. Gunsalus, and C. F. Gunsalus. 1953. The enzymatic conversion of mandelic acid to benzole acid. II. Properties of the particulate fractions. J. Bacteriol. 66:543-547.
30. Synstad, B., O. J. Emmerhoff, and R. Sirevåg. 1996. Malate dehydrogenase from the green gliding bacterium Chloroflexus aurantiacus is phylogenetically related to lactic dehydrogenases. Arch. Microbiol. 165:346-353.
31. Tamaoka, J., D.-M. Ha, and K. Komagata. 1987. Reclassification of Pseudomonas acidovorans den Dooren de Jong 1926 and Pseudomonas testosteroni Marcus and Talalay 1956 as Comamonas acidovorans comb. nov. and Comamonas testosteroni comb. nov., with an emended description of the genus Comamonas. Int. J. Syst. Bacteriol. 37:52-59.
32. Vogel, R. F., K.-D. Entian, and D. Mecke. 1987. Cloning and sequencing of the mdh structural gene of Escherichia coli coding for malate dehydrogenase. Arch. Microbiol. 149:36-42.
33. Wierenga, R. K., and W. G. J. Hol. 1983. Predicted nucleotide-binding properties of p21 protein and its cancer-associated variant. Nature 302:842.
34. Willems, A., E. Falsen, B. Pot, E. Jantzen, B. Hoste, P. Vandamme, M. Gillis, K. Kersters, and J. De Ley. 1990. Acidovorax, a new genus for Pseudomonas facilis, Pseudomonas delafieldii, E. Falsen (EF) group 13, EF group 16, and several clinical isolates, with the species Acidovorax facilis comb. nov., Acidovorax delafieldii comb. nov., and Acidovorax temperans sp. nov. Int. J. Syst. Bacteriol. 40:384-398.
35. Woese, C. R., E. Stackebrandt, W. G. Weisburg, B. J. Paster, M. T. Madigan, V. J. Fowler, C. M. Hahn, P. Blanz, R. Gupta, K. H. Nealson, and G. E. Fox. 1984. The phylogeny of purple bacteria: the alpha subdivision. Syst. Appl. Microbiol. 5:315-326.
36. Woese, C. R., W. G. Weisburg, B. J. Paster, C. M. Hahn, R. S. Tanner, N. R. Krieg, H.-P. Koops, H. Harms, and E. Stackebrandt. 1984. The phylogeny of purple bacteria: the beta subdivision. Syst. Appl. Microbiol. 5:327-336.
37. Woese, C. R., W. G. Weisburg, C. M. Hahn, B. J. Paster, L. B. Zablen, B. J. Lewis, T. J. Macke, W. Ludwig, and E. Stackebrandt. 1985. The phylogeny of purple bacteria: the gamma subdivision. Syst. Appl. Microbiol. 6:25-33.
38. Wynne, S. A., D. J. Nicholls, M. D. Scawen, and T. K. Sundaram. 1996. Tetrameric malate dehydrogenase from a thermophilic Bacillus: cloning, sequence and overexpression of the gene encoding the enzyme and isolation and characterization of the recombinant enzyme. Gene 317:235-245.
39. Yabuuchi, E., Y. Kosako, H. Oyaizu, I. Yano, H. Hotta, Y. Hashimoto, T. Ezaki, and M. Arakawa. 1992. Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Microbiol. Immunol. 36:1251-1275.
40. Yabuuchi, E., Y. Kosako, I. Yano, H. Hotta, and Y. Nishiuchi. 1995. Transfer of two Burkholderia and an Alcaligenes species to Ralstonia gen. nov.: proposal of Ralstonia pickettii (Ralston, Palleroni and Doudorofi 1973) comb. nov., Ralstonia solanacearum (Smith 1896) comb. nov. and Ralstonia eutropha (Davis 1969) comb. nov. Microbiol. Immunol 39:897-904.