Crystal structures of ribonuclease a complexes with 5'- diphosphoadenosine 3'-phosphate and 5'-diphosphoadenosine 2'-phosphate at 1.7 Å resolution

Biochemistry

Volumn 36, Issue 18, 1997, Pages 5578-5588

  Leonidas, Demetres D ^a   Shapiro, Robert ^b   Irons, Laurence I ^a   Russo, Nello ^b   Acharya, K Ravi ^a  

^a UNIVERSITY OF BATH   (United Kingdom)

^b HARVARD MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE 2' PHOSPHATE; ADENOSINE 3' PHOSPHATE; RIBONUCLEASE A;

ANIMAL TISSUE; ARTICLE; BINDING SITE; CATTLE; COMPLEX FORMATION; CRYSTAL STRUCTURE; ENZYME INHIBITION; NONHUMAN; PRIORITY JOURNAL; PROTEIN CONFORMATION; RNA DEGRADATION;

ADENOSINE DIPHOSPHATE; ANIMALS; BINDING SITES; CATTLE; CRYSTALLOGRAPHY, X-RAY; ENZYME INHIBITORS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PANCREAS; PROTEIN BINDING; PROTEIN CONFORMATION; RIBONUCLEASE, PANCREATIC;

ANIMALIA; BOS TAURUS; BOVINAE;

EID: 0030917539     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9700330     Document Type: Article

References (52)

1. Acharya, K. R., Shapiro, R., Allen, S. C., Riordan, J. F., & Vallee, B. L. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 2915-2919.
2. Altona, C., & Sundaralingam, M. (1972) J. Am. Chem. Soc. 94, 8205-8212.
3. Anderson, D. G., Hammes, G. G., & Walz, F. G. (1968) Biochemistry 7, 1637-1645.
4. Bailey, S. (1994) Acta Crystallogr. D 50, 760-763.
5. Blackburn, P., & Moore, S. (1982) The Enzymes 15, 317-433.
6. Borkakoti, N., Moss, D. A., & Palmer, R. A. (1982) Acta Crystallogr. B 38, 2210-2217.
7. Brünger, A. T. (1992a) X-PLOR Version 3.1 Manual: A system for X-ray Crystallography & NMR, Yale University Press, New Haven, CT.
8. Brünger, A. T. (1992b) Nature 355, 472-475.
9. Burley, S. K., & Petsko, G. A. (1988) Adv. Protein Chem. 39, 124-189.
10. D'Alessio, G. (1993) Trends Cell Biol. 3, 106-109.
11. deMel, S. J., Doscher, M. S., Martin, P. D., Rodier, F., & Edwards, B. F. P. (1995) Acta Crystallogr. D 51, 1003-1012.
12. Eftink, M. E., & Biltonen, R. L. (1987) in Hydrolytic Enzymes, pp 333-376, Elsevier Science Publishers, Amsterdam, New York, and Oxford.
13. Fett, J. W., Strydom, D. J., Lobb, R. R., Alderman, E. M., Bethune, J. L., Riordan, J. F., & Vallee, B. L. (1985) Biochemistry 24, 5480-5486.
14. Filman, D. J., Bolin, J. T., Matthews, D. A., & Kraut, J. (1982) J. Biol. Chem. 257, 13663-13672.
15. Fontecilla-Camps, J. C., de Llorens, R., le Du, M. H., & Cuchillo, C. M. (1994) J. Biol. Chem. 269, 21526-21531.
16. French, S., & Wilson, K. S. (1978) Acta Crystallogr. A 34, 517-525.
17. Gleich, G. J. Loegering, D. A., Bell, M. P., Checkel, J. L., Ackerman, S. J., & McKean, D. J. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 3146-3150.
18. Hodel, A., Kim, S.-H., & Brünger, A. T. (1992) Acta Crystallogr. A 48, 851-859.
19. Howlin, B., Harris, G. W., Moss, D. S., & Palmer, R. A. (1987) J. Mol. Biol. 196, 159-164.
20. Howlin, B., Moss, D. S., & Harris, G. W. (1989) Acta Crystallogr. A 45, 851-861.
21. Irie, M., Watanabe, H., Ohgi, K., Tobe, M., Matsumura, G., Arata, Y., Hirose, T., & Inayama, S. (1984) J. Biochem. 95, 751-759.
22. IUPAC-IUB Joint Commission on Biochemical Nomenclature (1983) Eur. J. Biochem. 131, 9-15.
23. Jones, T. A., Zou, J. Y., Cowan, S. W., & Kjeldgaard, M. (1991) Acta Crystallogr. A 47, 110-119.
24. Kabsch, W. (1988) J. Appl. Crystallogr. 21, 916-924.
25. Kim, E. E., Varadarajan, R., Wyckoff, H. W., & Richards, F. M. (1992) Biochemistry 31, 12304-12314.
26. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.
27. Laskowski, R. A., MacArthur, M. W., Moss, D. S., & Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291.
28. Lindquist, R. N., Lynn, J. L., & Lienhard, G. E. (1973) J. Am. Chem. Soc. 95, 8762-8768.
29. Lisgarten, J. N., Gupta, V., Maes, D., Wyns, L., Zegers, I., Palmer, R. A., Dealwis, C. G., Aguilar, C. F., & Hammings, A. M. (1993) Acta Crystallogr. D49, 541-547.
30. Moodie, S. L., & Thornton, J. M. (1993) Nucleic Acids Res. 21, 1369-1380.
31. Mosimann, S. C., Newton, D. L., Youle, R. J., & James, M. N. G. (1996) J. Mol. Biol. 260, 540-552.
32. Navaza, J. (1994) Acta Crystallogr. A 50, 157-163.
33. Olson, K. A., French, T. C., Vallee, B. L., & Fett, J. W. (1994) Cancer Res. 54, 4576-4579.
34. Olson, K. A., Fett, J. W., French, T. C., Key, M. E., & Vallee, B. L. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 442-446.
35. Otwinowski, Z. (1993) in Data Collection and Processing (Sawyer, L., Isaacs, N., & Bailey, S. S., Eds.) pp 56-62, SERC Daresbury Laboratory, Warrington, UK.
36. Parés, X., Nogués, M. V., Llorens, R., & Cuchillo, C. M. (1991) Essays Biochem. 26, 89-103.
37. Read, J. (1986) Acta Crystallogr. A 42, 140-149.
38. Reich, S. H., Melnick, M., Davies, J. F., Appelt, K., Lewis, K. K., Fuhry, M. A., Pino, M., Trrippe, A. J., Nguyen, D., Dawson, H., Wu, B. W., Musick, L., Kosa, M., Kahil, D., Webber, S., Gehlhaar, D. K., Andrada, D., & Shetty, B. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 3298-3302.
39. Richards, F. M., & Wyckoff, H. W. (1971) The Enzymes 4, 647-806.
40. Richards, F. M., Wyckoff, H. W., Carlson, W. D., Allewell, N. M., Lee, B., & Mitsui, Y. (1972) Cold Spring Harbor Symp. Quant. Biol. 36, 35-43.
41. Rockwell, A., Melden, M., Copeland, R. A., Hardman, K., Decicco, C. P., & DeGrado, W. F. (1996) J. Am. Chem. Soc. 118, 10337-10338.
42. Russo, N., Acharya, K. R., Vallee, B. L., & Shapiro, R. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 804-808.
43. Russo, N., Shapiro, R., & Vallee, B. L. (1997) Biochem. Biophys. Res. Commun. 231, 671-674.
44. Shapiro, R., & Vallee, B. L. (1989) Biochemistry 28, 7401-7408.
45. Shapiro, R., Fox, E. A., & Riordan, J. F. (1989) Biochemistry 28, 1726-1732.
46. Sorrentino, S., Glitz, D. G., Hamann, K. J., Loegering, D. A., Checkel, J. L., & Gleich, G. L. (1992) J. Biol. Chem. 267, 14859-14865.
47. Strydom, D. J., Fett, J. W., Lobb, R. R., Alderman, E. M., Bethune, J. L., Riordan, J. F., & Vallee, B. L. (1985) Biochemistry 24, 5486-5494.
48. Toiron, C., Gonzalez, C., Bruix, M., & Rico, M. (1996) Protein Sci. 5, 1633-1647.
49. Williams, R. L., Greene, S. M., & McPherson, A. (1987) J. Biol. Chem. 262, 16020-16031.
50. Wlodawer, A., Miller, M., & Sjolin, L. (1983) Proc. Natl. Acad. Sci. U.S.A. 80, 3628-3631.
51. Wlodawer, A., Svensson, L. A., Sjolin, L., & Gilliland, G. L. (1988) Biochemistry 27, 2705-2717.
52. Zegers, I., Macs, D., Dao-Thi, M.-H., Poortmans, F., Palmer, R., & Wyns, L. (1994) Protein Sci. 31, 2322-2339.