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Volumn 277, Issue 5327, 1997, Pages 805-808

Identification of the tuberous sclerosis gene TSC1 on chromosome 9q34

(41)  Van Slegtenhorst, Marjon a   De Hoogt, Ronald a   Hermans, Caroline a   Nellist, Mark a   Janssen, Bart a   Verhoef, Senno a   Lindhout, Dick a   Van Den Ouweland, Ans a   Halley, Dicky a   Young, Janet b   Burley, Mariwyn b   Jeremiah, Steve b   Woodward, Karen b   Nahmias, Joseph b   Fox, Margaret b   Ekong, Rosemary b   Osborne, John c   Wolfe, Jonathan b   Povey, Sue b   Snell, Russell G d   more..


Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT;

EID: 0030879277     PISSN: 00368075     EISSN: None     Source Type: Journal    
DOI: 10.1126/science.277.5327.805     Document Type: Article
Times cited : (1466)

References (60)
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    • The diagnosis of tuberous sclerosis was made according to standard diagnostic criteria (2). Blood samples (obtained after informed consent) were used for DNA preparation, either directly or after creation of immortalized Epstein-Barr virus-transformed lymphoblastoid cell lines. Linkage to the TSC1 region was inferred if a family demonstrated obligate recombination with markers within 2 centimorgans (cM) of TSC2 and had positive lod scores (logarithm of the odds ratio for linkage) in analyses with 9q34 markers (Fig. 1). Families providing critical recombinant events were analyzed with multiple markers from 9q34, and haplotype analysis was performed manually to identify the site of recombination.
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    • Cosmid (15) DNA was sheared and subcloned into M13mp18. Single clear plaques were picked using an automated picking device (PBA Technologies, Cambridge, UK) and expanded with JM101, and phage supernatant was collected. M13 DNA isolation was performed with the Sequatron robotic system [T. L. Hawkins et al., Science 276, 1887 (1997)] following the solid-phase reversible immobilization protocol [T. L. Hawkins, T. O'Connor, A. Roy, C. Santillan, Nucleic Acids Res. 22, 4543 (1994)]. Dye primer DNA sequencing used energy transfer primers and thermosequenase (Amersham), and electrophoresis was performed on Applied Biosystems 377 DNA sequencers. Gel files were extracted, signal-processed, and bases called with the program Trout (available from genome.wi. mit.edu/distribution/software/trout) and were assembled with Alewife, a sequence assembly package. Typically, 1200 reads from a single cosmid assembled into one to three contigs, which were then finished by directed primer walking and directed selection of reverse reads from existing M13 templates to span sequence gaps. All sequence data and protocols were available during the sequence process from our Web site, http://www-seq.wi.mit.edu.
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    • Cosmid (15) DNA was sheared and subcloned into M13mp18. Single clear plaques were picked using an automated picking device (PBA Technologies, Cambridge, UK) and expanded with JM101, and phage supernatant was collected. M13 DNA isolation was performed with the Sequatron robotic system [T. L. Hawkins et al., Science 276, 1887 (1997)] following the solid-phase reversible immobilization protocol [T. L. Hawkins, T. O'Connor, A. Roy, C. Santillan, Nucleic Acids Res. 22, 4543 (1994)]. Dye primer DNA sequencing used energy transfer primers and thermosequenase (Amersham), and electrophoresis was performed on Applied Biosystems 377 DNA sequencers. Gel files were extracted, signal-processed, and bases called with the program Trout (available from genome.wi. mit.edu/distribution/software/trout) and were assembled with Alewife, a sequence assembly package. Typically, 1200 reads from a single cosmid assembled into one to three contigs, which were then finished by directed primer walking and directed selection of reverse reads from existing M13 templates to span sequence gaps. All sequence data and protocols were available during the sequence process from our Web site, http://www-seq.wi.mit.edu.
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    • Cosmid (15) DNA was sheared and subcloned into M13mp18. Single clear plaques were picked using an automated picking device (PBA Technologies, Cambridge, UK) and expanded with JM101, and phage supernatant was collected. M13 DNA isolation was performed with the Sequatron robotic system [T. L. Hawkins et al., Science 276, 1887 (1997)] following the solid-phase reversible immobilization protocol [T. L. Hawkins, T. O'Connor, A. Roy, C. Santillan, Nucleic Acids Res. 22, 4543 (1994)]. Dye primer DNA sequencing used energy transfer primers and thermosequenase (Amersham), and electrophoresis was performed on Applied Biosystems 377 DNA sequencers. Gel files were extracted, signal-processed, and bases called with the program Trout (available from genome.wi. mit.edu/distribution/software/trout) and were assembled with Alewife, a sequence assembly package. Typically, 1200 reads from a single cosmid assembled into one to three contigs, which were then finished by directed primer walking and directed selection of reverse reads from existing M13 templates to span sequence gaps. All sequence data and protocols were available during the sequence process from our Web site, http://www-seq.wi.mit.edu.
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    • note
    • We thank the hundreds of TSC patients and their families for blood samples and financial support (particularly V. Whittemore and W. Watts), and numerous clinicians (particularly A. Oranje, H. Stroink, M. Wildervanck de Blecourt, H. Kros, B. Prahl-Andersen, and H. L. J. Tanghe) for assistance; H. Galjaard and P. Harper for support; R. Bakker, S. Ramlakhan, D. Humphrey, Q. Wang, M. Maheshwar, A. L. W. Hesseling-Janssen, N. Thomas, and R. Slomski for technical support; and the UK HGMP Resource Centre and the European Collection of Animal Cell Cultures. Supported by the NIH, National Tuberous Sclerosis Association, Tuberous Sclerosis Association of Great Britain, Dutch Organization for Scientific Research (NWO), Dutch Tuberous Sclerosis Association (STSN), Dutch Kidney Foundation, Westminster Medical School Research Trust (Royds Fund), Bath Unit for Research into Paediatrics, and New Zealand Health Resources Council.


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