Occurrence of deletions, associated with genetic instability in Streptomyces ambofaciens, is independent of the lineartry of the chromosomal DNA

Journal of Bacteriology

Volumn 179, Issue 14, 1997, Pages 4553-4558

  Fischer, Gilles ^a   Decaris, Bernard ^a   Leblond, Pierre ^a  

^a UNIVERSITÉ DE LORRAINE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA;

ARTICLE; CHROMOSOME STRUCTURE; DNA DETERMINATION; GENE AMPLIFICATION; GENE DELETION; GENETIC STABILITY; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; SEQUENCE HOMOLOGY; STREPTOMYCES;

BACTERIA (MICROORGANISMS); STREPTOMYCES; STREPTOMYCES AMBOFACIENS;

EID: 0030877502     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.179.14.4553-4558.1997     Document Type: Article

References (27)

1. Altenbuchner, J., and J. Cullum. 1985. Structure of an amplifiable DNA sequence in Streptomyces lividans 66. Mol. Gen. Genet. 201:192-197.
2. Aubert, M., E. Weber, D. Schneider, J. M. Simonet, and B. Decaris. 1993. Primary structure of a duplicated region in the amplifiable AUD6 locus of Streptomyces ambofaciens DSM40697. FEMS Microbiol. Lett. 113:49-56.
3. Birch, A., A. Häusler, C. Rüttener, and R. Hütter. 1991. Chromosomal deletion and rearrangement in Streptomyces glaucescens. J. Bacteriol. 173: 3531-3538.
4. Chen, C. W., Y. S. Lin, Y. L. Yang, W. Y. Lin, H. M. Chang, H. M. Kieser, and D. A. Hapwood. 1994. The linear chromosome of Streptomyces: structure and dynamics. Actinomycetology 8:85-112.
5. Chu, G., D. Vollrath, and R. W. Davis. 1986. Separation of large DNA molecules by contour-clamped homogeneous electric fields. Science 234: 1582-1585.
6. Cullum, J. Personal communication.
7. Demuyter, P., D. Schneider, P. Lebland, J. M. Simonet, and B. Decaris. 1991. A chromosomal hotspot for multiple rearrangements associated with genetic instability of Streptomyces ambofaciens DSM40697. J. Gen. Microbiol. 137: 491-499.
8. Dyson, P., and H. Schrempf. 1987. Genetic instability and DNA amplification in Streptomyces lividans 66. J. Bacteriol. 169:4796-4803.
9. Gravius, B., T. Bezmalinovic, D. Hranueli, and J. Cullum. 1993 Genetic instability and strain degeneration in Streptomyces rimosus. Appl. Environ. Microbiol. 59:2220-2228.
10. Hopwood, D. A., M. J. Bibb, K. F. Chater, T. Kieser, C. J. Bruton, H. M. Kieser, D. J. Lydiate, C. P. Smith, J. M. Ward, and H. Schrempf. 1985. Genetic manipulation of Streptomyces: a laboratory manual. John Innes Foundation, Norwich, United Kingdom.
11. Hornemann, U., C. J. Otto, and X, Y. Zhang. 1989. DNA amplification in Streptomyces achromogenes subsp. rubradiris is accompanied by a deletion, and the amplified sequences are conditionally stable and can be eliminated by two pathways. J. Bacteriol. 171:5817-5822.
12. Kieser, H. M., T. Kieser, and D. A. Hopwood. 1992. A combined genetic and physical map of the Streptomyces coelicolor A3(2) chromosome. J. Bacteriol. 174:5496-5507.
13. Leblond, P., G. Fischer, F. X. Francou, F. Berger, M. Guérineau, and B. Decaris. 1996. The unstable region of Streptomyces ambofaciens includes 210 kb terminal inverted repeats flanking the extremities of the linear chromosome. Mol. Microbiol. 19:261-271.
14. Leblond, P., M. Redenbach, and J. Cullum. 1993. Physical map of the Streptomyces lividans 66 genome and comparison with that of the related strain Streptomyces coelicolor A3(2). J. Bacteriol. 175:3422-3429.
15. Leblond, P., P. Demuyter, J. M. Simonet, and B. Decaris. 1991. Genetic instability and associated genome plasticity in Streptomyces ambofaciens: pulsed-field gel electrophoresis evidence for large DNA alterations in a limited genomic region. J. Bacteriol. 173:4229-4233.
16. Lebland, P., P. Demuyter, L. Moutier, M. Laakel, B. Decaris, and J. M. Simonet. 1989. Hypervariability, a new phenomenon of genetic instability, related to DNA amplification in Streptomyces ambofaciens. J. Bacteriol. 171:419-423.
17. Lezhava, A., T. Mizukami, T. Kajitani, D. Kameoka, M. Redenbach, H. Shinkawa, O. Nimi, and H. Kinashi. 1995. Physical map of the linear chromosome of Streptomyces griseus. J. Bacteriol. 177:6492-6498.
18. Lin, Y.-S., H. M. Kieser, D. A. Hopwood, and C. W. Chen. 1993. The chromosomal DNA of Streptomyces lividans 66 is linear. Mol. Microbiol. 10:923-933.
19. Pridham, T. G., P. Anderson, C. Foly, L. A. Linderfelser, C. W. Hesseltine, and R. C. Benedict. 1957. A selection of media for maintenance and taxonomic study of Streptomyces. Antibiot. Annu. 1956-1957:947-953.
20. Rauland, U., I. Glocker, M. Redenbach, and J. Cullum. 1995. DNA amplification and deletions in Streptomyces lividans 66 and the loss of one end of the linear chromosome. Mol. Gen. Genet. 246:37-44.
21. Redenbach, M., F. Flelt, W. Piendl, I. Glocker, U. Rauland, O. Wafzig, R. Kliem, P. Leblond, and J. Cullum. 1993. The Streptomyces lividans 66 chromosome contains a 1MB deletogenic region flanked by two amplifiable regions. Mol. Gen. Genet. 241:255-262.
22. Redenbach, M., H. M. Kieser, D. Denapaite, A. Eichner, J. Cullum, H. Kinashi, and D. A. Hopwood. 1996. A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome. Mol. Microbiol. 21:77-96.
23. Robinson, M., E., Lewis, and E. Napier. 1981. Occurrence of reiterated DNA sequences in strains of Streptomyces produced by an interspecific protoplast fusion. Mol. Gen. Genet. 182:336-340.
24. Sambrook, J., E. F., Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
25. Schrempf, H. 1983. Deletion and amplification of DNA sequences in melanin-negative variants of Streptomyces reticuli. Mol. Gen. Genet. 189: 501-505.
26. Smith, G. E., and M. D. Summers. 1980. The bidirectional transfer of DNA and RNA to nitrocellulose or diazobenzyloxymethyl paper. Anal. Biochem. 109:123-129.
27. Young, J., and J. Cullum. 1987. A plausible mechanism for large-scale chromosomal DNA amplification in Streptomyces. FEBS Lett. 212:10-14.