Comparative genomic hybridization analysis of breast tumors with predetermined profiles of DNA amplification

Cancer Research

Volumn 57, Issue 19, 1997, Pages 4368-4377

  Courjal, Frank ^a   Theillet, Charles ^a,b  

^a INSTITUT DE GÉNÉTIQUE MOLÉCULAIRE DE MONTPELLIER   (France)

^b CENTRE VAL D AURELLE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BREAST TUMOR; CANCER INVASION; CHROMOSOME MAP; DNA HYBRIDIZATION; GENE AMPLIFICATION; GENE REARRANGEMENT; HUMAN; HUMAN TISSUE; METAPHASE; MOLECULAR GENETICS; PHENOTYPE; PRIORITY JOURNAL; SOUTHERN BLOTTING;

ADULT; AGED; BLOTTING, SOUTHERN; BREAST NEOPLASMS; CHROMOSOMES, HUMAN; DNA, NEOPLASM; FEMALE; GENE AMPLIFICATION; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MIDDLE AGED; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; RECEPTOR, ERBB-2;

EID: 0030863936     PISSN: 00085472     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (39)

1. Du Manoir, S., Speicher, M. R., Joos, S., Schröck, E., Popp, S., Döhner, H., Kovacs, G., Robert-Nicoud, M., Lichter, P., and Cremer, T. Detection of complete and partial chromosome gains and losses by comparative genomic in situ hybridization. Hum. Genet., 90: 590-610, 1993.
2. Kallioniemi, A. H., Kallioniemi, O. P., Sudar, D., Rutovitz, D., Gray, J. W., Waldman, F., and Pinkel, D. Comparative genomic hybridization for molecular cytogenetics analysis of solid tumors. Science (Washington DC), 258: 818-821, 1992.
3. Kallioniemi, A. H., Kallioniemi, O. P., Piper, J., Tanner, M. M., Stokke, T., Chen, L., Smith, H. S., Pinkel, D., Gray, J. W., and Waldman, F. M. Detection and mapping of amplified DNA sequences in breast cancer by comparative genomic hybridization. Proc. Natl. Acad. Sci. USA. 91: 2156-2160, 1994.
4. Ried, T., Just, K. E., Holtgreve-Grez, H., Du Manoir, S., Speicher, M. R., Schröck, E., Latham, C., Blegen, H., Zetterberg, A., Cremer, T., and Auer, G. Comparative genomic hybridization of formalin-fixed, paraffin-embedded breast tumors reveals different patterns of chromosomal gains and losses in fibroadenomas and diploid and aneuploid carcinomas. Cancer Res., 55: 5415-5423, 1995.
5. Courjal, F., Cuny, M., Simony Lafontaine, J., Louason, G., Speiser, P., Zeillinger, R., Rodriguez, C., and Theillet, C. Mapping of DNA amplifications at 15 chromosomal localizations in 1875 breast tumors: definition of phenotypic groups. Cancer Res., 57: 4360-4367, 1997.
6. Courjal, F., Louason, G., Speiser, P., Katsaros, D., Zeillinger, R., and Theillet, C. Cyclin gene amplification and overexpression in breast and ovarian cancers: evidence for the selection of cyclin D1 in breast and cyclin E in ovarian tumors. Int. J. Cancer, 69: 247-253, 1996.
7. Du Manoir, S., Schröck, E., Bentz, M., Speicher, M. R., Joos, S., Ried, T., Lichter, P., and Cremer, T. Quantitative analysis of comparative genomic hybridization. Cytometry, 19: 27-41, 1995.
8. Escot, C., Le Roy, X., Chalbos, D., Joyeux, C., Simonsen, E., Daures, J. P., Soussaline, F., and Rochefort, H. Computer-aided quantification of RNA levels detected by in situ hybridization of tissue sections. Anal. Cell. Pathol., 3: 215-224, 1991.
9. Tanner, M. M., Tirkkonen, M., Kallioniemi, A. H., Isola, J., Kuukasjärvi, T., Collins, C., Kowbel, D., Guan, X-Y., Trent, J., Gray, J. W., Meltzer, P., and Kallioniemi, O. P. Independent amplification and frequent co-amplification of three nonsyntenic regions on the long arm of chromosome 20 in human breast cancer. Cancer Res., 56: 3441-3445, 1996.
10. Piper, J., Rutovitz, D., Sudar, D., Kallioniemi, A. H., Kallioniemi, O. P., Waldman, F. M., Gray, J. W., and Pinkel, D. Computer image analysis of comparative genomic hybridization. Cytometry, 19: 10-26, 1995.
11. Kallioniemi, O. P., Kallioniemi, A. H., Piper, J., Isola, J., Waldman, F. M., Gray, J. W., and Pinkel, D. Optimizing comparative genomic hybridization for analysis of DNA sequence copy number changes in solid tumors. Genes Chromosomes Cancer, 10: 231-243, 1994.
12. Guan, X-Y., Xu, J., Anzick, S. L., Zhang, H., Trent, J. M., and Meltzer, P. S. Hybrid selection of transcribed sequences from microdissected DNA: isolation of genes within an amplified region at 20q11-13.2 in breast cancer. Cancer Res., 56: 3446-3450, 1996.
13. Muleris, M., Almeida, A., Gerbault Seureau, M., Malfoy, B., and Dutrillaux, B. Detection of DNA amplification in 17 primary breast carcinomas with homogeneously staining regions by a modified comparative genomic hybridization technique. Genes Chromosomes Cancer, 10: 160-170, 1994.
14. Arnold, N., Hägele, L., Walz, L., Shempp, W., Pfisterer, J., Bauknecht, T., and Kiechle, M. Overrepresentation of 3q and 8q material and loss of 18q material are recurrent findings in advanced human ovarian cancer. Genes Chromosomes Cancer, 16: 46-54, 1996.
15. Bentz, M., Döhner, H., Huck, K., Schütz, B., Ganser, A., Joos, S., Du Manoir, S., and Lichter, P. Comparative genomic hybridization in the investigation of myeloid leukemias. Genes Chromosomes Cancer, 12: 193-200, 1997.
16. Cher, M. L., Bova, G. S., Moore, D. H., Small, E., Carroll, P. R., Pin, S. S., Epstein, J. I., Isaacs, W. B., and Jensen, R. H. Genetic alterations in untreated metastases and androgen-independent prostate cancer detected by comparative genomic hybridization and allelotyping. Cancer Res., 56: 3091-3102, 1996.
17. Cher, M. L., MacGrogan, D., Bookstein, R., Brown, J. A., Jenkins, R. B., and Jensen, R. H. Comparative genomic hybridization, allelic imbalance, and fluorescence in situ hybridization on chromosome 8 in prostate cancer. Genes Chromosomes Cancer, 11: 153-162, 1994.
18. Iwabuchi, H., Sakamoto, M., Sakunaga, H., Ma, Y-Y., Carcangiu, M. L., Pinkel, D., Yang-Feng, T. L., and Gray, J. W. Genetic analysis of benign, low-grade, and high-grade ovarian tumors. Cancer Res., 55: 6172-6180, 1995.
19. Ried, T., Petersen, I., Holtgreve Grez, H., Speicher, M. R., Schröck, E., Du Manoir, S., and Cremer, T. Mapping of multiple DNA gains and losses in primary small cell lung carcinomas by comparative genomic hybridization. Cancer Res., 54: 1801-1806, 1994.
20. Speicher, M. R., Prescher, G., Du Manoir, S., Jauch, A., Horsthemke, B., Bornfeld, N., Becher, R., and Cremer, T. Chromosomal gains and losses in uveal melanomas detected by comparative genomic hybridization. Cancer Res., 54: 3817-3823, 1994.
21. Visakorpi, T., Kallioniemi, A. H., Syvanen, A. C., Hyytinen, E. R., Karhu, R., Tammela, T., Isola, J. J., and Kallioniemi, O. P. Genetic changes in primary and recurrent prostate cancer by comparative genomic hybridization. Cancer Res., 55: 342-347, 1995.
22. Guan, X. Y., Meltzer, P., Dalton, W. S., and Trent, J. M. Identification of cryptic sites of DNA sequence amplification in human breast cancer by chromosome microdissection. Nat. Genet., 8: 155-161, 1994.
23. Dutrillaux, B., Gerbault-Seureau, M., and Zafrani, B. Characterization of chromosomal anomalies in human breast cancer. A comparison of 30 paradiploid cases with few chromosome changes. Cancer Genet. Cytogenet., 49: 203-217, 1990.
24. Kokalj-Vokac, N., Almeida, A., Gerbault-Seureau, M., Malfoy, B., and Dutrillaux, B. Two-color FISH characterization of i(1q) and der(1;16) in human breast cancer cells. Genes Chromosomes Cancer, 7: 8-14, 1993.
25. Micale, M. A., Visscher, D. W., Gulino, S. E., and Wolman, S. R. Chromosomal aneuploidy in proliferative breast disease. Hum. Pathol., 25: 29-35, 1994.
26. Pandis, N., Heim, S., Bardi, G., Idvall, I., Mandahl, N., and Mitelman, F. Whole-arm t(1;16) and i(1q) as sole anomalies identify gain of 1q as a primary chromosomal abnormality in breast cancer. Genes Chromosomes Cancer, 5: 235-238, 1992.
27. Chen, L-C., Dollbaum, C., and Smith, H. Loss of heterozygosity on chromosome 1q in human breast cancer. Proc. Natl. Acad. Sci. USA, 86: 7204-7207, 1989.
28. Borg, A., Zhang, Q. X., Olsson, H., and Wenngren, E. Chromosome 1 alterations in breast cancer: allelic loss on 1p and 1q is related to lymphogenic metastases and poor prognosis. Genes Chromosomes Cancer, 5: 311-320, 1992.
29. Devilee, P., van Vliet, M., Bardoel, A., Kievits, T., Kuipers-Dijkshoorn, N., Pearson, P. L., and Cornelisse, C. J. Frequent somatic imbalance of marker alleles for chromosome 1 in human primary breast carcinoma. Cancer Res., 51: 1020-1025, 1991.
30. Ichikawa, H., Shimizu, K., Hayashi, Y., and Ohki, M. An RNA-hindmg protein gene, TLS/FUS, is fused to ERG in human myeloid leukemia with t(16;21) chromosomal translation. Cancer Res., 54: 2865-2868, 1994.
31. Panagopoulos, I., Aman, P., Fioretos, T., Hoglund, M., Johansson, B., Mandahl, N., Heim, S., Behrendtz, M., and Mitelman, F. Fusion of the FUS gene with ERG in acute myeloid leukemia with t(16;21)(p11;q22). Genes Chromosomes Cancer, 11: 256-262, 1994.
32. Prasad, D., Ouchida, M., Lee, L., Rao, V., and Reddy, E. TLS/FUS fusion domain of TLS/FUS-erg chimeric protein resulting from the t(16;21) chromosomal translocation in human myeloid leukemia functions as a transcriptional activation domain. Oncogene, 9: 3717-3729, 1994.
33. Rabbitts, T., Forster, A., Larson, R., and Nathan, P. Fusion of the dominant negative transcription regulator CHOP with a novel gene FUS by translocation t(12;16) in malignant liposarcoma. Nat. Genet., 4: 175-180, 1993.
34. Cornelis, R. S., Devilee, P., van Vliet, M., Kuipers-Dijkshoorn, N., Kersenmaeker, A., Bardoel, A., Khan, P. M., and Cornelisse, C. J. Allele loss patterns on chromosome 17q in 109 breast carcinomas indicate at least two distinct target regions. Oncogene, 8: 781-785, 1993.
35. Cropp, C. S., Champeme, M. H., Lidereau, R., and Callahan, R. Identification of three regions on chromosome 17q in primary human breast carcinomas which are frequently deleted. Cancer Res., 53: 5617-5619, 1993.
36. Kirchweger, R., Zeillinger, R., Schneeberger, C., Speiser, P., Louason, G., and Theillet, C. Patterns of allele losses suggest the existence of five distinct regions of LOH on chromosome 17 in breast cancer. Int. J. Cancer, 56: 193-199, 1994.
37. Karlseder, J., Zeillinger, R., Schneeberger, C., Czerwenka, K., Speiser, P., Kubista, E., Birnbaum, D., Gaudray, D., and Theillet, C. Patterns of DNA amplification at band q13 of chromosome 11 in human breast cancer. Genes Chromosomes Cancer, 9: 42-48, 1994.
38. Bièche, I., Tomasetto, C., Régnier, C. H., Moog-Lutz, C., Rio, M-C., and Lidereau, R. Two distinct amplified regions at 17q11-q21 involved in human primary breast cancer. Cancer Res., 56: 3886-3890, 1996.
39. Tomasetto, C., Régnier, C., Moog-Lutz, C., Mattei, M. G., Chenard, M. P., Lidereau, R., Basset, P., and Rio, M. C. Identification of four novel human genes amplified and overexpressed in breast carcinoma and localized to the q11-q21.3 region of chromosome 17. Genomics, 28: 367-376, 1995.