Selectively infective phages (SIP)

Biological Chemistry

Volumn 378, Issue 6, 1997, Pages 445-456

  Spada, Stefania ^b   Krebber, Claus ^a,b   Plückthun, Andreas ^b  

^a Maxygen   (United States)

^b UNIVERSITY OF ZURICH   (Switzerland)

Author keywords

Gene3protein; Libraries; Molecular evolution; Phage infectivity; Phage libraries; Screening

Indexed keywords

AMINO TERMINAL SEQUENCE; BACTERIAL INFECTION; BACTERIOPHAGE; LIBRARY; LIGAND BINDING; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; REVIEW;

BACTERIOPHAGES; EVOLUTION, MOLECULAR; GENETIC ENGINEERING; HUMANS; INOVIRIDAE; PEPTIDE LIBRARY; PROTEIN ENGINEERING;

BACTERIA (MICROORGANISMS);

EID: 0030849223     PISSN: 14316730     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (58)

1. Adey, N.B., Mataragnon, A.H., Rider, J.E., Carter, J.M., and Kay, B.K. (1995). Characterization of phage that bind plastic from phage-displayed random peptide libraries. Gene 156, 27-31.
2. Armstrong, J., Perham, R.N., and Walker, J.E. (1981). Domain structure of bacteriophage fd adsorption protein. FEBS Lett. 135, 167-172.
3. Bai, C., and Elledge, S.J. (1996). Gene identification using the yeast two-hybrid system. Methods Enzymol. 273, 331-347.
4. Beck, E., and Zink, B. (1981). Nucleotide sequence and genome organization of filamentous bacteriophages f1 and fd. Gene 16, 35-58.
5. Braun, V., and Herrmann, C. (1993). Evolutionary relationship of uptake systems for biopolymers in Escherichia coli: cross-complementation between the TonB-ExbB-ExbD and the TolA-TolQ-TolR proteins. Mol. Microbiol. 8, 261-268.
6. Cadwell, R.C., and Joyce, G.F. (1994). Mutagenic PCR. PCR Methods Appl. 3, S136-140.
7. Clackson, T., and Wells, J.A. (1994). In vitro selection from protein and peptide libraries. Trends Biotechnol. 72, 173-184.
8. Crameri, R., and Suter, M. (1993). Display of biologically active proteins on the surface of filamentous phages: cDNA cloning system for selection of funcional gene products linked to the genetic information responsible for their production. Gene 137, 69-75.
9. Crissman, J.W., and Smith, G.P. (1984). Gene-III protein of filamentous phages: evidence for a carboxy-terminal domain with a role in morphogenesis. Virology 132, 445-455.
10. Cull, M.G., Miller, J.F., and Schatz, P.J. (1992). Screening for receptor ligands using large libraries of peptides linked to the C terminus of the lac repressor. Proc. Natl. Acad. Sci. USA 89, 1865-1869.
11. Davis, N.G., Boeke, J.D., and Model, P. (1985). Fine structure of a membrane anchor domain. J. Mol. Biol. 181, 111-121.
12. Duenas, M., and Borrebaeck, C.A.K. (1994). Clonal selection and amplification of phage displayed antibodies by linking antigen recognition and phage replication. Bio/Technology 12, 999-1002.
13. Duenas, M., and Borrebaeck, C.A.K. (1995). Novel helper phage design: intergenic region affects the assembly of bacteriophages and the size of antibody libraries. FEMS Lett. 125, 317-321.
14. Duenas, M., Malmborg, A.-C., Casalvilla, R., Ohlin, M., and Borrebaeck, C.A.K. (1996a). Selection of phage displayed antibodies based on kinetic constants. Mol. Immunol. 33, 279-285.
15. Duenas, M., Chin, L.-T., Malmborg, A.-C., Casalvilla, R., Ohlin, M., and Borrebaeck, C.A.K. (1996b). In vitro immunization of naive human B cells yields high affinity immunoglobulin G antibodies as illustrated by phage display. Immunology 89, 1-7.
16. Dunn, I.S. (1996). Phage display of proteins. Curr. Opin. Biotechnol. 7, 547-553.
17. Endemann, H., and Model, P. (1995). Location of filamentous phage minor coat proteins in phage and in infected cells. J. Mol. Biol. 250, 496-506.
18. Endemann, H., Bross, P., and Rasched, I. (1992). The adsorption protein of phage IKe. Localization by deletion mutagenesis of domains involved in infectivity. Mol. Microbiol. 6, 471-478.
19. Endemann, H., Gailus, V., and Rasched, I. (1993). Interchange-ability of the adsorption proteins of bacteriophages Ff and IKe. J. Wol. 67, 3332-3337.
20. Gailus, V., and Rasched, I. (1994) The adsorption protein of bacteriophage fd and its neighbour minor coat protein build a structural entity. Eur. J. Biochem. 222, 927-931.
21. Gailus, V., Ramsperger, U., Johner, C., Kramer, H., and Rasched, I. (1994). The role of the adsorption complex in the termination of filamentous phage assembly. Res. Microbiol. 145, 699-709.
22. Gramatikoff, K., Georgiev, O., and Schaffner, W. (1994). Direct interaction rescue, a novel filamentous phage technique to study protein-protein interactions. Nucl. Acids Res. 22, 5761-5762.
23. Gramatikoff, K., Schaffner, W., and Georgiev, O. (1995). The leucin-zipper of c-Jun binds to ribosomal protein L18a: a role in Jun protein regulation? Biol. Chem. 376, 321-325.
24. Griffiths, A.D., Williams, S.C., Hartley, O., Tomlinson, I.M., Water-house, P., Crosby, W.L. et al. (1994). Isolation of high affinity human antibodies directly from large synthetic repertoires. EMBO J. 13, 3245-3260.
25. Hanes, J., and Plückthun, A. (1997). In vitro selection and diversification of functional proteins using ribosome display. Proc. Natl. Acad. Sci. USA, 94, 4937-4942.
26. Hawkins, R.E., Russell, S.J., and Winter, G. (1992). Selection of phage antibodies by binding affinity. Mimicking affinity maturation. J. Mol. Biol. 226, 889-896.
27. Holliger, P., and Riechmann, L. (1997). A conserved infection pathway for filamentous bacteriophages is suggested by the structure of the membrane penetration domain of the minor coat protein g3p from phage fd. Structure 5, 265-275.
28. Ito, K., Date T., and Wickner, W. (1980). Synthesis, assembly into the cytoplasmic membrane, and proteolytic processing of the precursor of coliphage M13 coat protein. J. Biol. Chem. 255, 2123-2130.
29. Jakes, K.S., Davis, G.D., and Zinder, N.D. (1988). A hybrid toxin from bacteriophage f1 attachment protein and colicin E3 has altered cell receptor specificity. J. Bacteriol. 170, 4231-4238.
30. Krebber, C., Moroney, S., Plückthun, A., and Schneider, C. (1993). European Patent Application EP 93102484.
31. Krebber, C., Spada, S., Desplancq, D., and Plückthun, A. (1995). Co-selection of cognate antibody-antigen pairs by selectively-infective phages. FEBS Lett. 377, 227-231.
32. Krebber, C., Spada, S., Desplancq, D., Krebber, A., Ge, L., and Plückthun, A. (1997). Selectively-infective phage (SIP): a mechanistic dissection of a novel in vivo selection for protein-ligand interactions. J. Mol. Biol. 268, 619-630.
33. Lopez, J., and Webster, R.E. (1983). Morphogenesis of filamentous bacteriophage f1 : orientation of extrusion and production of polyphage. Virology 127, 177-193.
34. Lowman, H.B., Bass, S.H., Simpson, N., and Wells, J.A. (1991). Selecting high-affinity binding proteins by monovalent phage display. Biochemistry 30, 10832-10838.
35. Maruyama, I.N., Maruyama, H.I., and Brenner, S. (1994). Lambda too: a lambda phage vector for the expression of foreign proteins. Proc. Natl. Acad. Sci. USA 91, 8273-8277.
36. Marzari, R., Sblattero, D., Righi, M., and Bradbury, A. (1997) Extending filamentous phage host range by the grafting of a heterologous receptor binding domain. Gene 185, 27-33.
37. Mattheakis, L.C., Bhatt, R.R., and Dower, W.J. (1994). An in vitro polysome display system for identifying ligands from very large peptidelibraries. Proc. Natl. Acad. Sci. USA 91, 9022-9026.
38. McCafferty, J., Griffiths, A.D., Winter G., and Chriswell, D.J. (1990). Phage antibodies: filamentous phage displaying antibody variable domains. Nature 348, 552-554.
39. McNabb, D.S., and Guarente, L. (1996). Genetic and biochemical probes for protein-protein interactions. Curr. Opin. Biotechnol. 7, 554-559.
40. Nelson, F.K., Friedman, S.M., and Smith, G.P. (1981). Filamentous phage DNA cloning vectors: A non-infective mutant with a non-polar deletion in gene III. Virology 108, 338-350.
41. O'Neil, K.T., and Hoess, R.H. (1995). Phage display: protein engineering by directed evolution. Curr. Opin. Struct. Biol. 5, 443-449.
42. Patel, L.R., Curran, T., and Kerppola, T.K. (1994). Energy transfer analysis of Fos-Jun dimerization and DNA binding. Proc. Natl. Acad. Sci. USA 91, 7360-7364.
43. Peeters, B.P., Peters, R.M., Schoenmakers, J.G., and Konings, R. N. (1985). Nucleotide sequence and genetic organization of the genome of the N-specific filamentous bacteriophage IKe. Comparison with the genome of the F-specific filamentous phages M13, fd and f1. J. Mol. Biol. 181, 27-39.
44. Pernelle, C., Clerc, F.F., Dureuil, C., Bracco, L., and Tocque, B. (1993). An efficient screening assay for the rapid and precise determination of affinities between leucine-zipper domains. Biochemistry 32, 11682-11687.
45. Phizicky, E.M., and Fields, S. (1995). Protein-protein interactions: methods for detection and analysis. Microbiol. Rev. 59, 94-123.
46. Rampf, B. (1993). Analyse der strukturellen Basis des Permeabilitätsanstiegs der Außenmembran in Escherichia coli nach Expression des Gen-3-Proteins aus dem Phagen fd. PhD Thesis; Universität Konstanz, Germany.
47. - bacteria by transducing particles of filamentous bacteriophages. J. Bacteriol. 170, 5312-5316.
48. Schumacher, T.N.M., Mayr, L.M., Minor, D.L. Jr., Milhollen, M.A., Burgess, M.W., and Kim, P.S. (1996). Identification of D-peptide ligands through mirror-image display. Science 271, 1854-1857.
49. Smith, G.P. (1985). Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface. Science 228, 1315-1317.
50. Stemmer, W.P. (1994). Rapid evolution of a protein in vitro by DNA shuffling. Nature 370, 389-391.
51. Stengele, I., Bross, P., Garces, X., Giray, J., and Rasched, I. (1990). Dissection of functional domains in phage fd adsorption protein. J. Mol. Biol. 212, 143-149.
52. Sternberg, N., and Hoess, R.H. (1995). Display of peptides and proteins on the surface of bacteriophage lambda. Proc. Natl. Acad. Sci. USA 92, 1609-1613.
53. Sun, T.-P. and Webster, R.E. (1987). Nucleotide sequence of a gene cluster involved in entry of E colicins and single-stranded DNA of infecting filamentous bacteriophages into Escherichia coli. J. Bacteriol. 169, 2667-2674.
54. Vaughan, T.J., Williams, A.J., Pritchard, K., Osbourn, J.K., Pope, A.R., Earnshow, J.C., McCafferty, J., Hodits, R.A., Wilton, J., and Johnson, K.S. (1996). Human antibodies with sub-nanomolar affinities isolated from a large non-immunized phage display library. Nature Biotechnology 14, 309-314.
55. Virnekäs, B., Ge, L., Plückthun, A., Schneider, K.C., Wellnhofer, G., and Moroney, S.E. (1994). Trinucleotide phosphoramidites: ideal reagents for the synthesis of mixed oligonucleotides for random mutagenesis. Nucleic Acids Res. 22, 5600-5607.
56. Webster, R.E. (1991). The tol gene products and the import of macromolecules into Escherichia coli. Mol. Microbiol. 5, 1005-1011.
57. Winter, G., Griffiths, A.D., Hawkins, R.E., and Hoogenboom, H.R. (1994). Making antibodies by phage display technology. Annu. Rev. Immunol. 12, 433-455.
58. Zacher, A.N., Stock, C.A., Golden, J.W., and Smith, G.P. (1980). A new filamentous phage cloning vector: fd-tet. Gene 9, 127-140.