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Volumn 71, Issue 11, 1997, Pages 8750-8758

Evolutionary variants of the human immunodeficiency virus type 1 V3 region characterized by using a heteroduplex tracking assay

Author keywords

[No Author keywords available]

Indexed keywords

CD4 ANTIGEN; VIRUS RNA;

EID: 0030812851     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.71.11.8750-8758.1997     Document Type: Article
Times cited : (59)

References (50)
  • 1
    • 0022495870 scopus 로고
    • Production of acquired immunodeficiency syndrome-associated retrovirus in human and nonhuman cells transfected with an infectious molecular clone
    • Adachi, A., H. E. Gendelman, S. Koenig, T. Folks, R. Willey, A. Rabson, and M. A. Martin. 1986. Production of acquired immunodeficiency syndrome-associated retrovirus in human and nonhuman cells transfected with an infectious molecular clone. J. Virol. 59:284-291.
    • (1986) J. Virol. , vol.59 , pp. 284-291
    • Adachi, A.1    Gendelman, H.E.2    Koenig, S.3    Folks, T.4    Willey, R.5    Rabson, A.6    Martin, M.A.7
  • 2
    • 0022485649 scopus 로고
    • Replicative properties of human immunodeficiency virus from patients with varying severity of HIV infection
    • Asjo, B., J. Albert, A. Karlsson, L. Morfeldt-Manson, G. Biberfeld, K. Lidman, and E. M. Fenyo. 1986. Replicative properties of human immunodeficiency virus from patients with varying severity of HIV infection. Lancet ii:660-662.
    • (1986) Lancet , vol.2 , pp. 660-662
    • Asjo, B.1    Albert, J.2    Karlsson, A.3    Morfeldt-Manson, L.4    Biberfeld, G.5    Lidman, K.6    Fenyo, E.M.7
  • 3
    • 0024426629 scopus 로고
    • The contrasting structures of mismatched DNA sequences containing looped-out bases (bulges) and multiple mismatches (bubbles)
    • Bhattacharyya, A., and D. M. Lilley. 1989. The contrasting structures of mismatched DNA sequences containing looped-out bases (bulges) and multiple mismatches (bubbles). Nucleic Acids Res. 17:6821-6840.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 6821-6840
    • Bhattacharyya, A.1    Lilley, D.M.2
  • 4
    • 0030053670 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 tropism for T-lymphoid cell lines: Role of the V3 loop and C4 envelope determinants
    • Carrillo, A., and L. Ratner. 1996. Human immunodeficiency virus type 1 tropism for T-lymphoid cell lines: role of the V3 loop and C4 envelope determinants. J. Virol. 70:1301-1309.
    • (1996) J. Virol. , vol.70 , pp. 1301-1309
    • Carrillo, A.1    Ratner, L.2
  • 5
    • 0031025113 scopus 로고    scopus 로고
    • Macrophage tropism of human immunodeficiency virus type 1 and utilization of the CC-CKR5 coreceptor
    • Cheng-Mayer, C., R. Liu, N. R. Landau, and L. Stamatatos. 1997. Macrophage tropism of human immunodeficiency virus type 1 and utilization of the CC-CKR5 coreceptor. J. Virol. 71:1657-1661.
    • (1997) J. Virol. , vol.71 , pp. 1657-1661
    • Cheng-Mayer, C.1    Liu, R.2    Landau, N.R.3    Stamatatos, L.4
  • 6
    • 0025930562 scopus 로고
    • Identification of human immunodeficiency virus envelope gene sequences influencing viral entry into CD4-positive HeLa cells, T-leukemia cells, and macrophages
    • Chesebro, B., J. Nishio, S. Perryman, A. Cann, W. O'Brien, I. S. Y. Chen, and K. Wehrly. 1991. Identification of human immunodeficiency virus envelope gene sequences influencing viral entry into CD4-positive HeLa cells, T-leukemia cells, and macrophages. J. Virol. 65:5782-5789.
    • (1991) J. Virol. , vol.65 , pp. 5782-5789
    • Chesebro, B.1    Nishio, J.2    Perryman, S.3    Cann, A.4    O'Brien, W.5    Chen, I.S.Y.6    Wehrly, K.7
  • 7
    • 0026672676 scopus 로고
    • Macrophage-tropic human immunodeficiency virus isolates from different patients exhibit unusual V3 envelope sequence homogeneity in comparison with T-cell-tropic isolates: Definition of critical amino acids involved in cell tropism
    • Chesebro, B., K. Wehrly, J. Nishio, and S. Perryman. 1992. Macrophage-tropic human immunodeficiency virus isolates from different patients exhibit unusual V3 envelope sequence homogeneity in comparison with T-cell-tropic isolates: definition of critical amino acids involved in cell tropism. J. Virol. 66:6547-6554.
    • (1992) J. Virol. , vol.66 , pp. 6547-6554
    • Chesebro, B.1    Wehrly, K.2    Nishio, J.3    Perryman, S.4
  • 8
    • 0029987361 scopus 로고    scopus 로고
    • Mapping of independent V3 envelope determinants of human immunodeficiency virus type 1 macrophage tropism and syncytium formation in lymphocytes
    • Chesebro, B., K. Wehrly, J. Nishio, and S. Perryman. 1996. Mapping of independent V3 envelope determinants of human immunodeficiency virus type 1 macrophage tropism and syncytium formation in lymphocytes. J. Virol. 70:9055-9059.
    • (1996) J. Virol. , vol.70 , pp. 9055-9059
    • Chesebro, B.1    Wehrly, K.2    Nishio, J.3    Perryman, S.4
  • 10
    • 0027409934 scopus 로고
    • Increased viral burden and cytopathicity correlate temporally with CD4+ T-lymphocyte decline and clinical progression in human immunodeficiency virus type 1-infected individuals
    • Connor, R. I., H. Mohri, Y. Cao, and D. D. Ho. 1993. Increased viral burden and cytopathicity correlate temporally with CD4+ T-lymphocyte decline and clinical progression in human immunodeficiency virus type 1-infected individuals. J. Virol. 67:1772-1777.
    • (1993) J. Virol. , vol.67 , pp. 1772-1777
    • Connor, R.I.1    Mohri, H.2    Cao, Y.3    Ho, D.D.4
  • 11
    • 0026702003 scopus 로고
    • Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: Analysis by single amino acid substitution
    • De Jong, J.-J., A. de Ronde, W. Keulen, M. Tersmette, and J. Goudsmit. 1992. Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: analysis by single amino acid substitution. J. Virol. 66:6777-6780.
    • (1992) J. Virol. , vol.66 , pp. 6777-6780
    • De Jong, J.-J.1    De Ronde, A.2    Keulen, W.3    Tersmette, M.4    Goudsmit, J.5
  • 13
    • 0027980442 scopus 로고
    • Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heteroduplex mobility assays
    • Delwart, E. L., H. W. Sheppard, B. D. Walker, J. Goudsmit, and J. I. Mullins. 1994. Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heteroduplex mobility assays. J. Virol. 68:6672-6683.
    • (1994) J. Virol. , vol.68 , pp. 6672-6683
    • Delwart, E.L.1    Sheppard, H.W.2    Walker, B.D.3    Goudsmit, J.4    Mullins, J.I.5
  • 17
    • 0030604727 scopus 로고    scopus 로고
    • A dual-tropic primary HIV-1 isolate that uses fusin and the beta-chemokine receptors CKR-5, CKR-3, and CKR-2b as fusion cofactors
    • Doranz, B. J., J. Rucker, Y. Yi, R. J. Smyth, M. Samson, S. C. Peiper, M. Parmentier, R. G. Collman, and R. W. Doms. 1996. A dual-tropic primary HIV-1 isolate that uses fusin and the beta-chemokine receptors CKR-5, CKR-3, and CKR-2b as fusion cofactors. Cell 85:1149-1158.
    • (1996) Cell , vol.85 , pp. 1149-1158
    • Doranz, B.J.1    Rucker, J.2    Yi, Y.3    Smyth, R.J.4    Samson, M.5    Peiper, S.C.6    Parmentier, M.7    Collman, R.G.8    Doms, R.W.9
  • 19
    • 0030002637 scopus 로고    scopus 로고
    • HIV-1 entry cofactor: Functional cDNA cloning of a seven-transmembrane, G protein-coupled receptor
    • Feng, Y., C. C. Broder, P. E. Kennedy, and E. A. Berger. 1996. HIV-1 entry cofactor: functional cDNA cloning of a seven-transmembrane, G protein-coupled receptor. Science 272:872-877.
    • (1996) Science , vol.272 , pp. 872-877
    • Feng, Y.1    Broder, C.C.2    Kennedy, P.E.3    Berger, E.A.4
  • 22
    • 0026640859 scopus 로고
    • Phenotype-associated env gene variation among eight related human immunodeficiency virus type 1 clones: Evidence for in vivo recombination and determinants of cytotropism outside the V3 domain
    • Groenink, M., A. C. Andeweg, R. A. Fouchier, S. Broersen, R. C. van der Jagt, H. Schuitemaker, R. E. de Goede, M. L. Bosch, H. G. Huisman, and M. Tersmette. 1992. Phenotype-associated env gene variation among eight related human immunodeficiency virus type 1 clones: evidence for in vivo recombination and determinants of cytotropism outside the V3 domain. J. Virol. 66:6175-6180.
    • (1992) J. Virol. , vol.66 , pp. 6175-6180
    • Groenink, M.1    Andeweg, A.C.2    Fouchier, R.A.3    Broersen, S.4    Van Der Jagt, R.C.5    Schuitemaker, H.6    De Goede, R.E.7    Bosch, M.L.8    Huisman, H.G.9    Tersmette, M.10
  • 24
    • 0028874048 scopus 로고
    • Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection
    • Ho, D. D., A. U. Neumann, A. S. Perelson, W. Chen, J. M. Leonard, and M. Markowitz. 1995. Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection. Nature 373:123-126.
    • (1995) Nature , vol.373 , pp. 123-126
    • Ho, D.D.1    Neumann, A.U.2    Perelson, A.S.3    Chen, W.4    Leonard, J.M.5    Markowitz, M.6
  • 25
    • 0025783669 scopus 로고
    • Identification of the envelope V3 loop as the primary determinant of cell tropism in HIV-1
    • Hwang, S. S., T. J. Boyle, H. K. Lyerly, and B. R. Cullen. 1991. Identification of the envelope V3 loop as the primary determinant of cell tropism in HIV-1. Science 253:71-74.
    • (1991) Science , vol.253 , pp. 71-74
    • Hwang, S.S.1    Boyle, T.J.2    Lyerly, H.K.3    Cullen, B.R.4
  • 26
    • 0028136695 scopus 로고
    • Standardized microtiter assay for determination of syncytium-inducing phenotypes of clinical human immunodeficiency virus type 1 isolates
    • Japour, A. J., S. A. Fiscus, J. M. Arduino, D. L. Mayers, P. S. Reichelderfer, and D. R. Kuritzkes. 1994. Standardized microtiter assay for determination of syncytium-inducing phenotypes of clinical human immunodeficiency virus type 1 isolates. J. Clin. Microbiol. 32:2291-2294.
    • (1994) J. Clin. Microbiol. , vol.32 , pp. 2291-2294
    • Japour, A.J.1    Fiscus, S.A.2    Arduino, J.M.3    Mayers, D.L.4    Reichelderfer, P.S.5    Kuritzkes, D.R.6
  • 27
  • 29
    • 0023214674 scopus 로고
    • Dual infection of the central nervous system by AIDS viruses with distinct cellular tropisms
    • Koyanagi, Y., S. Miles, R. T. Mitsuyasu, J. E. Merrill, H. V. Vinters, and I. S. Y. Chen. 1987. Dual infection of the central nervous system by AIDS viruses with distinct cellular tropisms. Science 236:819-822.
    • (1987) Science , vol.236 , pp. 819-822
    • Koyanagi, Y.1    Miles, S.2    Mitsuyasu, R.T.3    Merrill, J.E.4    Vinters, H.V.5    Chen, I.S.Y.6
  • 30
    • 0026915406 scopus 로고
    • Evolution of the V3 envelope domain in proviral sequences and isolates of human immunodeficiency virus type 1 during transition of the viral biological phenotype
    • Kuiken, C. L., J.-J. de Jong, E. Baan, W. Keulen, M. Tersmette, and J. Goudsmit. 1992. Evolution of the V3 envelope domain in proviral sequences and isolates of human immunodeficiency virus type 1 during transition of the viral biological phenotype. J. Virol. 66:4622-4627.
    • (1992) J. Virol. , vol.66 , pp. 4622-4627
    • Kuiken, C.L.1    De Jong, J.-J.2    Baan, E.3    Keulen, W.4    Tersmette, M.5    Goudsmit, J.6
  • 31
    • 0028813272 scopus 로고
    • Improved direct PCR screen for bacterial colonies: Wooden toothpicks inhibit PCR amplification
    • Lee, A. B., and T. A. Cooper. 1995. Improved direct PCR screen for bacterial colonies: wooden toothpicks inhibit PCR amplification. BioTechniques 18: 225-226.
    • (1995) BioTechniques , vol.18 , pp. 225-226
    • Lee, A.B.1    Cooper, T.A.2
  • 33
    • 0029671077 scopus 로고    scopus 로고
    • V3 seroreactivity and sequence variation: Tracking the emergence of V3 genotypic variation in HIV-1-infected patients
    • Michael, N. L., K. E. Davis, L. D. Loomis-Price, T. C. VanCott, D. S. Burke, R. R. Redfield, and D. L. Birx. 1996. V3 seroreactivity and sequence variation: tracking the emergence of V3 genotypic variation in HIV-1-infected patients. AIDS 10:121-129.
    • (1996) AIDS , vol.10 , pp. 121-129
    • Michael, N.L.1    Davis, K.E.2    Loomis-Price, L.D.3    Vancott, T.C.4    Burke, D.S.5    Redfield, R.R.6    Birx, D.L.7
  • 34
    • 0027221071 scopus 로고
    • V3 loop of the human immunodeficiency virus type 1 Env protein: Interpreting sequence variability
    • Milich, L., B. Margolin, and R. Swanstrom. 1993. V3 loop of the human immunodeficiency virus type 1 Env protein: interpreting sequence variability. J. Virol. 67:5623-5634.
    • (1993) J. Virol. , vol.67 , pp. 5623-5634
    • Milich, L.1    Margolin, B.2    Swanstrom, R.3
  • 35
    • 0031455910 scopus 로고    scopus 로고
    • Patterns of amino acid variability in NSI-like and SI-like V3 sequences and a linked change in the CD4-binding domain of the HIV-1 Env protein
    • in press
    • Milich, L., B. H. Margolin, and R. Swanstrom. Patterns of amino acid variability in NSI-like and SI-like V3 sequences and a linked change in the CD4-binding domain of the HIV-1 Env protein. Virology, in press.
    • Virology
    • Milich, L.1    Margolin, B.H.2    Swanstrom, R.3
  • 37
    • 0004125860 scopus 로고
    • National Institutes of Health, Bethesda, Md
    • National Institutes of Health. 1994. ACTG virology manual for HIV laboratories. National Institutes of Health, Bethesda, Md.
    • (1994) ACTG Virology Manual for HIV Laboratories
  • 38
    • 0025065099 scopus 로고
    • HIV-1 tropism for mononuclear phagocytes can be determined by regions of gp120 outside the CD4-binding domain
    • O'Brien, W. A., Y. Koyanagi, A. Namazie, J. Q. Zhao, A. Diagne, K. Idler, J. A. Zack, and I. S. Y. Chen. 1990. HIV-1 tropism for mononuclear phagocytes can be determined by regions of gp120 outside the CD4-binding domain. Nature 348:69-73.
    • (1990) Nature , vol.348 , pp. 69-73
    • O'Brien, W.A.1    Koyanagi, Y.2    Namazie, A.3    Zhao, J.Q.4    Diagne, A.5    Idler, K.6    Zack, J.A.7    Chen, I.S.Y.8
  • 39
    • 0024267430 scopus 로고
    • Fidelity of HIV-1 reverse transcriptase
    • Preston, B. D., B. J. Poiesz, and L. A. Loeb. 1988. Fidelity of HIV-1 reverse transcriptase. Science 242:1168-1171.
    • (1988) Science , vol.242 , pp. 1168-1171
    • Preston, B.D.1    Poiesz, B.J.2    Loeb, L.A.3
  • 40
    • 0028228466 scopus 로고
    • Comparison of in vivo plasma and peripheral blood mononuclear cell HIV-1 quasispecies to short-term tissue culture isolates: An analysis of tat and C2-V3 env regions
    • Sabino, E., L.-Z. Pan, C. Chang-Mayer, and A. Mayer. 1994. Comparison of in vivo plasma and peripheral blood mononuclear cell HIV-1 quasispecies to short-term tissue culture isolates: an analysis of tat and C2-V3 env regions. AIDS 8:901-909.
    • (1994) AIDS , vol.8 , pp. 901-909
    • Sabino, E.1    Pan, L.-Z.2    Chang-Mayer, C.3    Mayer, A.4
  • 42
    • 0026600926 scopus 로고
    • Biological phenotype of human immunodeficiency virus type 1 clones at different stages of infection: Progression of disease is associated with a shift from monocytotropic to T-cell-tropic virus populations
    • Schuitemaker, H., M. Root, N. A. Kootstra, M. W. Dercksen, R. E. Y. de Goede, R. P. Van Steenwijk, J. M. A. Lange, J. K. M. Eeftink-Schattenkerk, F. Miedema, and M. Tersmette. 1992. Biological phenotype of human immunodeficiency virus type 1 clones at different stages of infection: progression of disease is associated with a shift from monocytotropic to T-cell-tropic virus populations. J. Virol. 66:1354-1360.
    • (1992) J. Virol. , vol.66 , pp. 1354-1360
    • Schuitemaker, H.1    Root, M.2    Kootstra, N.A.3    Dercksen, M.W.4    De Goede, R.E.Y.5    Van Steenwijk, R.P.6    Lange, J.M.A.7    Eeftink-Schattenkerk, J.K.M.8    Miedema, F.9    Tersmette, M.10
  • 43
    • 0026754683 scopus 로고
    • Small amino acid changes in the V3 hypervariable region of gp120 can affect the T-cell-line and macrophage tropism of human immunodeficiency virus type 1
    • Shioda, T., J. A. Levy, and C. Cheng-Mayer. 1992. Small amino acid changes in the V3 hypervariable region of gp120 can affect the T-cell-line and macrophage tropism of human immunodeficiency virus type 1. Proc. Natl. Acad. Sci. USA 89:9434-9438.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 9434-9438
    • Shioda, T.1    Levy, J.A.2    Cheng-Mayer, C.3
  • 45
    • 0024536114 scopus 로고
    • Evidence for a role of virulent human immunodeficiency virus (HIV) variants in the pathogenesis of acquired immunodeficiency syndrome: Studies on sequential HIV isolates
    • Tersmette, M., R. A. Gruters, F. de Wolf, R. E. de Goede, J. M. Lange, P. T. Schellekens, J. Goudsmit, H. G. Huisman, and F. Miedema. 1989. Evidence for a role of virulent human immunodeficiency virus (HIV) variants in the pathogenesis of acquired immunodeficiency syndrome: studies on sequential HIV isolates. J. Virol. 63:2118-2125.
    • (1989) J. Virol. , vol.63 , pp. 2118-2125
    • Tersmette, M.1    Gruters, R.A.2    De Wolf, F.3    De Goede, R.E.4    Lange, J.M.5    Schellekens, P.T.6    Goudsmit, J.7    Huisman, H.G.8    Miedema, F.9
  • 47
    • 0029163092 scopus 로고
    • Transmission of zidovudine-resistant human immunodeficiency virus type 1 variants following deliberate injection of blood from a patient with AIDS: Characteristics and natural history of the virus
    • Veenstra, J., R. Schuurman, M. Cornelissen, A. B. van't Wout, C. A. Boucher, H. Schuitemaker, J. Goudsmit, and R. A. Coutinho. 1995. Transmission of zidovudine-resistant human immunodeficiency virus type 1 variants following deliberate injection of blood from a patient with AIDS: characteristics and natural history of the virus. Clin. Infect. Dis. 21:556-560.
    • (1995) Clin. Infect. Dis. , vol.21 , pp. 556-560
    • Veenstra, J.1    Schuurman, R.2    Cornelissen, M.3    Van't Wout, A.B.4    Boucher, C.A.5    Schuitemaker, H.6    Goudsmit, J.7    Coutinho, R.A.8
  • 48
    • 0025802093 scopus 로고
    • Effects of bulge composition and flanking sequence on the kinking of DNA by bulged bases
    • Wang, Y.-H., and J. Griffith. 1991. Effects of bulge composition and flanking sequence on the kinking of DNA by bulged bases. Biochemistry 30:1358-1363.
    • (1991) Biochemistry , vol.30 , pp. 1358-1363
    • Wang, Y.-H.1    Griffith, J.2


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