Comparison of the role of 5' terminal sequences of alfalfa mosaic virus RNAs 1, 2, and 3 in viral RNA replication

Virology

Volumn 235, Issue 2, 1997, Pages 333-341

  Van Rossum, Clemens M A ^a   Neeleman, Lyda ^a   Bol, John F ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ALFALFA MOSAIC VIRUS; ARTICLE; CONTROLLED STUDY; GENE; GENE SEQUENCE; NONHUMAN; PRIORITY JOURNAL; RNA REPLICATION; VIRUS REPLICATION;

ALFALFA MOSAIC VIRUS; MEDICAGO SATIVA; NICOTIANA OBTUSIFOLIA; NICOTIANA TABACUM;

EID: 0030771804     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1997.8707     Document Type: Article

References (38)

1. Ahlquist P., Dasgupta R., Kaesberg P. Nucleotide sequence of the brome mosaic virus genome and its implications for viral replication. J. Mol. Biol. 172:1984;369-383.
2. Allison R. F., Janda M., Ahlquist P. Sequence of cowpea chlorotic mottle virus RNAs 2 and 3 and evidence of a recombination event during bromovirus evolution. Virology. 172:1989;321-330.
3. Bol J. F., van Vloten-Doting L., Jaspars E. M. J. A functional equivalence of top component a RNA and coat protein in the initiation of infection by alfalfa mosaic virus. Virology. 46:1971;73-85.
4. Brederode F. Th., Taschner P. E. M., Posthumus E., Bol J. F. Replicase-mediated resistance to alfalfa mosaic virus. Virology. 207:1995;467-474.
5. Davies C., Symons R. H. Further implications for the evolutionary relationships between tripartite plant viruses based on cucumber mosaic virus RNA 3. Virology. 165:1988;216-224.
6. de Graaff M., Man in 't Veld M. R., Jaspars E. M. J. In vitro. Virology. 208:1995;583-589.
7. Duggal R., Lahser F. C., Hall T. C. Cis. Annu. Rev. Phytopathol. 32:1994;287-309.
8. Dzianott A. M., Bujarski J. J. The nucleotide sequence and genome organization of the RNA-1 segment in two bromoviruses: Broad bean mottle virus and cowpea chlorotic mottle virus. Virology. 185:1991;553-562.
9. Feinberg A. P., Vogelstein B. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 137:1984;266-267.
10. French R., Ahlquist P. Intercistronic as well as terminal sequences are required for efficient amplification of brome mosaic virus RNA 3. J. Virol. 61:1987;1457-1465.
11. Ge X., Scott S. W. The nucleotide sequence of citrus leaf rugose ilarvirus RNA-2. J. Gen. Virol. 75:1994;2841-2846.
12. Houser-Scott F., Baer M. L., Liem K. L., Cai J., Gehrke L. Nucleotide sequence and structural determinants of specific binding of coat protein or coat protein peptides to the 3′ untranslated region of alfalfa mosaic virus RNA 4. J. Virol. 68:1994;2194-2205.
13. Huisman M. J., Cornelissen B. J. C., Groenendijk C. F. M., Bol J. F., van Vloten-Doting L. Alfalfa mosaic virus temperature-sensitive mutants. V. The nucleotide sequence of TbTs 7 RNA 3 shows limited nucleotide changes and evidence for heterologous recombination. Virology. 171:1989;409-416.
14. Jaspars E. M. J. Interaction of alfalfa mosaic virus nucleic acid and protein. Molecular Plant Virology. 1985;CRC Press, Boca Raton. p. 155-221.
15. Kim K., Hemenway C. The 5′ nontranslated region of potato virus X RNA affects both genomic and subgenomic RNA synthesis. J. Virol. 70:1996;5533-5540.
16. Koper-Zwarthoff E. C., Bol J. F. Nucleotide sequence of the putative recognition site for coat protein in the RNAs of alfalfa mosaic virus and tobacco streak virus. Nucleic Acids Res. 15:1980;3307-3318.
17. Meyer F., Weber H., Weissmann C. Interactions of Qβ replicase with Qβ RNA. J. Mol. Biol. 153:1981;631-660.
18. Neeleman L., van der Kuyl A. C., Bol J. F. Role of alfalfa mosaic virus coat protein gene in symptom formation. Virology. 181:1991;687-693.
19. Neeleman L., van der Vossen E. A. G., Bol J. F. Infection of tobacco with alfalfa mosaic virus cDNAs sheds light on the early function of the coat protein. Virology. 196:1993;883-887.
20. Pacha R. F., Ahlquist P. Substantial portions of the 5′ and intercistronic noncoding regions of cowpea chlorotic mottle virus RNA 3 are dispensable for systemic infection but influence viral competitiveness and infection pathology. Virology. 187:1992;298-307.
21. Ravelonandro M., Godefroy-Colburn T., Pinck L. Structure of the 5′-terminal untranslated region of the genomic RNAs from two strains of alfalfa mosaic virus. Nucleic Acids Res. 11:1983;2815-2826.
22. Reusken C. B. E. M., Neeleman L., Bol J. F. The 3′-untranslated region of alfalfa mosaic virus RNA 3 contains at least two independent binding sites for viral coat protein. Nucleic Acids Res. 22:1994;1346-1353.
23. Reusken C. B. E. M., Bol J. F. Structural elements of the 3′-terminal coat protein binding site in alfalfa mosaic virus RNAs. Nucleic Acids Res. 24:1996;2660-2665.
24. Rezaian M. A., Williams R. H. V., Gordon K. H. J., Gould A. R., Symons R. H. Nucleotide sequence of cucumber mosaic virus RNA 2 reveals a translation product significantly homologous to corresponding proteins of other viruses. Eur. J. Biochem. 143:1984;277-284.
25. Rezaian M. A., Williams R. H. V., Symons R. H. Nucleotide sequence of cucumber mosaic virus RNA 1. Presence of a sequence complementary to part of the viral satellite RNA and homologies with other viral RNAs. Eur. J. Biochem. 150:1985;331-339.
26. Romero J., Dzianott A. M., Bujarski J. J. The nucleotide sequence and genome organization of the RNA2 and RNA3 segments in broad bean mottle virus. Virology. 187:1992;671-681.
27. Scott S. W., Ge X. The complete nucleotide sequence of RNA 3 of citrus leaf rugose and citrus variegation ilarviruses. J. Gen. Virol. 76:1995a;957-963.
28. Scott S. W., Ge X. The nucleotide sequence of citrus leaf rugose virus RNA 1. J. Gen. Virol. 76:1995b;3233-3238.
29. Taschner P. E. M., van der Kuyl A. C., Neeleman L., Bol J. F. Replication of an incomplete alfalfa mosaic virus genome in plants transformed with viral replicase genes. Virology. 181:1991;445-450.
30. van Bokhoven H., Le Gall O., Kasteel D., Verver J., Wellink J., van Kammen A. Cistrans. Virology. 195:1993;377-386.
31. van Dun C. M. P., van Vloten-Doting L., Bol J. F. Expression of alfalfa mosaic virus cDNA 1 and 2 in transgenic tobacco plants. Virology. 163:1988;572-578.
32. van der Vossen E. A. G., Bol J. F. Analysis of cis-acting elements in the 5′ leader sequence of alfalfa mosaic virus RNA 3. Virology. 220:1996;539-543.
33. van der Vossen E. A. G., Neeleman L., Bol J. F. Early and late functions of alfalfa mosaic virus coat protein can be mutated separately. Virology. 202:1994;891-903.
34. van der Vossen E. A. G., Neeleman L., Bol J. F. The 5′ terminal sequence of alfalfa mosaic virus RNA 3 is dispensable for replication and contains a determinant for symptom formation. Virology. 221:1996;271-280.
35. van der Vossen E. A. G., Notenboom T., Bol J. F. Characterization of sequences controlling the synthesis of alfalfa mosaic virus subgenomic RNAin vivo. Virology. 212:1995;663-672.
36. van Rossum C. M. A., Garcia M. L., Bol J. F. Accumulation of alfalfa mosaic virus RNAs 1 and 2 requires the encoded proteins incis. J. Virol. 70:1996;5100-5105.
37. van Rossum C. M. A., Brederode F. Th., Neeleman L., Bol J. F. Functional equivalence of common and unique sequences in the 3′ untranslated regions of alfalfa mosaic virus RNAs 1, 2 and 3. J. Virol. 71:1997;3811-3816.
38. van Vloten-Doting L., Jaspars E. M. J. The uncoating of alfalfa mosaic virus by its own RNA. Virology. 48:1972;699-708.