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Volumn 3, Issue 10, 1997, Pages 1135-1142

Functional groups on the cleavage site pyrimidine nucleotide are required for stabilization of the hammerhead transition state

Author keywords

Catalytic RNA; Ribozyme; Structure function

Indexed keywords

PYRIMIDINE NUCLEOTIDE; RIBOZYME;

EID: 0030752599     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (17)

References (37)
  • 1
    • 0031053277 scopus 로고    scopus 로고
    • A kinetic and thermodynamic analysis of cleavage site mutations in the hammerhead ribozyme
    • Baidya N, Uhlenbeck OC. 1997. A kinetic and thermodynamic analysis of cleavage site mutations in the hammerhead ribozyme. Biochemistry 36:1108-1114.
    • (1997) Biochemistry , vol.36 , pp. 1108-1114
    • Baidya, N.1    Uhlenbeck, O.C.2
  • 3
    • 0029037731 scopus 로고
    • Synthesis of 6-Aza- & 6-methyl-pyrimidine ribonucleoside phosphoramidites and their incorporation in hammerhead ribozymes
    • Beigelman L, Karpeisky A, Usman N. 1995b. Synthesis of 6-Aza- & 6-methyl-pyrimidine ribonucleoside phosphoramidites and their incorporation in hammerhead ribozymes. Nucleosides & Nucleotides 14:895-899.
    • (1995) Nucleosides & Nucleotides , vol.14 , pp. 895-899
    • Beigelman, L.1    Karpeisky, A.2    Usman, N.3
  • 4
    • 0022433369 scopus 로고
    • Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA
    • Brown RS, Dewan JC, Klug A. 1985. Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA. Biochemistry 24:4785-4801.
    • (1985) Biochemistry , vol.24 , pp. 4785-4801
    • Brown, R.S.1    Dewan, J.C.2    Klug, A.3
  • 6
    • 0022504693 scopus 로고
    • Non-enzymatic cleavage and ligation of RNAs complementary to a plant virus satellite RNA
    • Buzayan JM, Gerlach WL, Bruening G. 1986. Non-enzymatic cleavage and ligation of RNAs complementary to a plant virus satellite RNA. Nature 323:349-353.
    • (1986) Nature , vol.323 , pp. 349-353
    • Buzayan, J.M.1    Gerlach, W.L.2    Bruening, G.3
  • 7
    • 0025645986 scopus 로고
    • Characterization of deoxy- and ribocontaining oligonucleotide substrates in the hammerhead self-cleavage reaction
    • Dahm SC, Uhlenbeck OC. 1990. Characterization of deoxy- and ribocontaining oligonucleotide substrates in the hammerhead self-cleavage reaction. Biochimie 72:819-823.
    • (1990) Biochimie , vol.72 , pp. 819-823
    • Dahm, S.C.1    Uhlenbeck, O.C.2
  • 8
    • 0029956116 scopus 로고    scopus 로고
    • RNA hydration: A detailed look
    • Egli M, Portman S, Usman N. 1996. RNA hydration: A detailed look. Biochemistry 35:8489-8494.
    • (1996) Biochemistry , vol.35 , pp. 8489-8494
    • Egli, M.1    Portman, S.2    Usman, N.3
  • 9
    • 0026620322 scopus 로고
    • Kinetics of intermolecular cleavage by hammerhead ribozymes
    • Fedor MJ, Uhlenbeck OC. 1992. Kinetics of intermolecular cleavage by hammerhead ribozymes. Biochemistry 31:12042-12054.
    • (1992) Biochemistry , vol.31 , pp. 12042-12054
    • Fedor, M.J.1    Uhlenbeck, O.C.2
  • 10
    • 0028288686 scopus 로고
    • A kinetic and thermodynamic framework for the hammerhead ribozyme reaction
    • Hertel KJ, Herschlag D, Uhlenbeck OC. 1994. A kinetic and thermodynamic framework for the hammerhead ribozyme reaction. Biochemistry 33:3374-3385.
    • (1994) Biochemistry , vol.33 , pp. 3374-3385
    • Hertel, K.J.1    Herschlag, D.2    Uhlenbeck, O.C.3
  • 11
    • 0028906353 scopus 로고
    • The internal equilibrium of the hammerhead ribozyme reaction
    • Hertel KJ, Uhlenbeck OC. 1995. The internal equilibrium of the hammerhead ribozyme reaction. Biochemistry 34:1744-1749.
    • (1995) Biochemistry , vol.34 , pp. 1744-1749
    • Hertel, K.J.1    Uhlenbeck, O.C.2
  • 14
    • 0023047510 scopus 로고
    • Self-cleavage of plus and minus RNA transcripts of avocado sun blotch viroid
    • Hutchins CJ, Rathjen PD, Forster AC, Symons RH. 1986. Self-cleavage of plus and minus RNA transcripts of avocado sun blotch viroid. Nucleic Acids Res 14:3627-3640.
    • (1986) Nucleic Acids Res , vol.14 , pp. 3627-3640
    • Hutchins, C.J.1    Rathjen, P.D.2    Forster, A.C.3    Symons, R.H.4
  • 15
    • 0000072585 scopus 로고
    • Nucleic acid components and their analogues. XVI. Dissociation constant of uracil, 6-azauracil, 5-azauracil and related compounds
    • Jonas J, Gut J. 1962. Nucleic acid components and their analogues. XVI. Dissociation constant of uracil, 6-azauracil, 5-azauracil and related compounds. Coll Czech Chem Commun 27:716-723.
    • (1962) Coll Czech Chem Commun , vol.27 , pp. 716-723
    • Jonas, J.1    Gut, J.2
  • 16
    • 0028842731 scopus 로고
    • Divalent metal ions and the internal equilibrium of the hammerhead ribozyme
    • Long DM, LaRiviere FJ, Uhlenbeck OC. 1995. Divalent metal ions and the internal equilibrium of the hammerhead ribozyme. Biochemistry 34:14435-14440.
    • (1995) Biochemistry , vol.34 , pp. 14435-14440
    • Long, D.M.1    LaRiviere, F.J.2    Uhlenbeck, O.C.3
  • 17
    • 0029999204 scopus 로고    scopus 로고
    • Synthesis and structure of 1-deoxy-1-phenyl-β-D-furanose and its incorporation into oligonucleotides
    • Matulic-Adamic J, Beigelman L, Portman S, Egli M, Usman N. 1996a. Synthesis and structure of 1-deoxy-1-phenyl-β-D-furanose and its incorporation into oligonucleotides. J Org Chem 61:3909-3911.
    • (1996) J Org Chem , vol.61 , pp. 3909-3911
    • Matulic-Adamic, J.1    Beigelman, L.2    Portman, S.3    Egli, M.4    Usman, N.5
  • 18
    • 0029877741 scopus 로고    scopus 로고
    • Synthesis of pyridinone ribonucleoside 3′-O-phosphoramidites and their incorporation into oligoribonucleotides
    • Matulic-Adamic J, Gonzalez C, Usman N, Beigelman L. 1996b. Synthesis of pyridinone ribonucleoside 3′-O-phosphoramidites and their incorporation into oligoribonucleotides. Bioorg Med Chem Lett 6:373-378.
    • (1996) Bioorg Med Chem Lett , vol.6 , pp. 373-378
    • Matulic-Adamic, J.1    Gonzalez, C.2    Usman, N.3    Beigelman, L.4
  • 19
    • 0029949701 scopus 로고    scopus 로고
    • Structure and function of the hammerhead ribozyme: An unfinished story
    • McKay DB. 1996. Structure and function of the hammerhead ribozyme: An unfinished story. RNA 2:395-403.
    • (1996) RNA , vol.2 , pp. 395-403
    • McKay, D.B.1
  • 20
    • 0030968710 scopus 로고    scopus 로고
    • Mechanistic aspects of enzymatic catalysis: Lessons from comparison of RNA and protein enzymes
    • Forthcoming
    • Narlikar GJ, Herschlag D. 1997. Mechanistic aspects of enzymatic catalysis: Lessons from comparison of RNA and protein enzymes. Annu Rev Biochem. Forthcoming.
    • (1997) Annu Rev Biochem
    • Narlikar, G.J.1    Herschlag, D.2
  • 21
    • 0029859191 scopus 로고    scopus 로고
    • Rescue of abasic hammerhead ribozymes by exogenous addition of specific bases
    • Peracchi A, Beigelman L, Usman N, Herschlag D. 1996. Rescue of abasic hammerhead ribozymes by exogenous addition of specific bases. Proc Natl Acad Sci USA 93:11522-11527.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 11522-11527
    • Peracchi, A.1    Beigelman, L.2    Usman, N.3    Herschlag, D.4
  • 22
    • 0028063567 scopus 로고
    • Three-dimensional structure of a hammerhead ribozyme
    • Pley HW, Flaherty KM, McKay DB. 1994. Three-dimensional structure of a hammerhead ribozyme. Nature 372:68-74.
    • (1994) Nature , vol.372 , pp. 68-74
    • Pley, H.W.1    Flaherty, K.M.2    McKay, D.B.3
  • 24
    • 0025155692 scopus 로고
    • Direct measurement of oligonucleotide substrate binding to wild-type and mutant ribozymes from Tetrahymena
    • Pyle AM, McSwiggen JA, Cech TR. 1990. Direct measurement of oligonucleotide substrate binding to wild-type and mutant ribozymes from Tetrahymena. Proc Natl Acad Sci USA 87:8187-8191.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 8187-8191
    • Pyle, A.M.1    McSwiggen, J.A.2    Cech, T.R.3
  • 25
    • 0013199463 scopus 로고
    • Defining terms for the nucleic acids
    • Cantor CR, ed. New York: Springer-Verlag Inc.
    • Saenger W. 1994. Defining terms for the nucleic acids. In: Cantor CR, ed. Principles of nucleic acid structure. New York: Springer-Verlag Inc. pp 21-23.
    • (1994) Principles of Nucleic Acid Structure , pp. 21-23
    • Saenger, W.1
  • 26
    • 0029073091 scopus 로고
    • The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
    • Scott W, Finch J, Klug A. 1995. The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage. Cell 81:991-1002.
    • (1995) Cell , vol.81 , pp. 991-1002
    • Scott, W.1    Finch, J.2    Klug, A.3
  • 27
    • 0030476765 scopus 로고    scopus 로고
    • Capturing the structure of a catalytic RNA intermediate: The hammerhead ribozyme
    • Scott WG. Murray JB, Arnold JRP, Stoddard BL, Klug A. 1996 Capturing the structure of a catalytic RNA intermediate: The hammerhead ribozyme. Science 274:2065-2069.
    • (1996) Science , vol.274 , pp. 2065-2069
    • Scott, W.G.1    Murray, J.B.2    Arnold, J.R.P.3    Stoddard, B.L.4    Klug, A.5
  • 29
    • 0026102040 scopus 로고
    • Configurationally defined phosphorothioate-containing oligoribonucleotides in the study of the mechanism of cleavage of hammerhead ribozymes
    • Slim G, Gait MJ. 1991. Configurationally defined phosphorothioate-containing oligoribonucleotides in the study of the mechanism of cleavage of hammerhead ribozymes. Nucleic Acids Res 19-1183-1188.
    • (1991) Nucleic Acids Res , vol.19 , pp. 1183-1188
    • Slim, G.1    Gait, M.J.2
  • 30
    • 0028003846 scopus 로고
    • The 2,6-diaminopurine riboside·5-methylisocytidine wobble base pair: An isoenergetic substitution for the study of G·U pairs in RNA
    • Strobel SA, Cech TR, Usman N, Beigelman L. 1994. The 2,6-diaminopurine riboside·5-methylisocytidine wobble base pair: An isoenergetic substitution for the study of G·U pairs in RNA. Biochemistry 33:13824-13835.
    • (1994) Biochemistry , vol.33 , pp. 13824-13835
    • Strobel, S.A.1    Cech, T.R.2    Usman, N.3    Beigelman, L.4
  • 31
    • 0015496042 scopus 로고
    • Molecular and crystal structure of 6-methyluridine. A pyrimidine nucleoside in the syn conformation
    • Suck D, Saenger W. 1972. Molecular and crystal structure of 6-methyluridine. A pyrimidine nucleoside in the syn conformation. J Am Chem Soc 94:6520-6526.
    • (1972) J Am Chem Soc , vol.94 , pp. 6520-6526
    • Suck, D.1    Saenger, W.2
  • 32
    • 0016590205 scopus 로고
    • Structure and conformation of nucleosides and nucleotides and their analogs as determined by X-ray diftraction
    • Bloch A, ed. New York: The New York Academy of Sciences
    • Sundaralingam M. 1975. Structure and conformation of nucleosides and nucleotides and their analogs as determined by X-ray diftraction. In: Bloch A, ed. Chemistry, biology, and clinical uses of nucleoside analogs. 255. New York: The New York Academy of Sciences, pp 3-42.
    • (1975) Chemistry, Biology, and Clinical Uses of Nucleoside Analogs , vol.255 , pp. 3-42
    • Sundaralingam, M.1
  • 33
    • 0027426257 scopus 로고
    • Importance of exocyclic base functional groups of central core guanosines for hammerhead ribozyme activity
    • Tuschl T, Ng MM, Pieken W, Benseler F, Eckstein F. 1993. Importance of exocyclic base functional groups of central core guanosines for hammerhead ribozyme activity. Biochemistry 32:11658-11668.
    • (1993) Biochemistry , vol.32 , pp. 11658-11668
    • Tuschl, T.1    Ng, M.M.2    Pieken, W.3    Benseler, F.4    Eckstein, F.5
  • 34
    • 0023221419 scopus 로고
    • A small catalytic oligoribonucleotide
    • Uhlenbeck OC. 1987. A small catalytic oligoribonucleotide. Nature 328:596-600.
    • (1987) Nature , vol.328 , pp. 596-600
    • Uhlenbeck, O.C.1
  • 35
    • 0025335881 scopus 로고
    • Two autolytic processing reactions of a satellite RNA proceed with inversion of configuration
    • van Tol H, Buzayan JM, Feldstein PA, Eckstein F, Bruening G. 1990. Two autolytic processing reactions of a satellite RNA proceed with inversion of configuration. Nucleic Acids Res 18:1971-1975.
    • (1990) Nucleic Acids Res , vol.18 , pp. 1971-1975
    • Van Tol, H.1    Buzayan, J.M.2    Feldstein, P.A.3    Eckstein, F.4    Bruening, G.5
  • 37
    • 0000504570 scopus 로고
    • Alkylation of some nucleic acid components and their analogues with dimethly formamide acetals
    • Zemlicka J. 1970. Alkylation of some nucleic acid components and their analogues with dimethly formamide acetals. Collec Czech Chem Commun 35:3572-3583.
    • (1970) Collec Czech Chem Commun , vol.35 , pp. 3572-3583
    • Zemlicka, J.1


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