Complete HLA-A DNA typing using the PCR-RFLP method combined with allele group and sequence-specific amplification

Tissue Antigens

Volumn 50, Issue 5, 1997, Pages 535-545

  Moribe, T ^a   Kaneshige, T ^a   Inoko, H ^b  

^a SHIONOGI AND CO LTD   (Japan)

^b TOKAI UNIVERSITY   (Japan)

Author keywords

Allele group and sequence specific amplification; DNA typing; HLA A allele; PCR RFLP

Indexed keywords

HLA A ANTIGEN; RESTRICTION ENDONUCLEASE;

ARTICLE; EXON; GENE AMPLIFICATION; GENOTYPE; HISTOCOMPATIBILITY GENE; HLA TYPING; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM;

EID: 0030716299     PISSN: 00012815     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1399-0039.1997.tb02910.x     Document Type: Article

References (33)

1. Townsend A, Bodmer H. Antigen recognition by class I restricted T lymphocytes. Annu Rev Immunol 1989: 7: 601.
2. Gotch FM, Kelly C, Ellis SA et al. Characterization of the HLA-A2.2 subtype: T cell evidence for further heterogeneity. Immunogenetics 1985: 21: 11-23.
3. van der Poel J, Pool J, Goulmy E, Giphart MJ, van Rood J. Recognition of distinct epitopes on the HLA-A2 antigen by cytotoxic T lymphocytes. Hum Immunol 1986: 16: 247-58.
4. Tussey LG, Matsui M, Rowland-Jones S, Warburton R, Frelinger JA, McMichael A. Analysis of mutant HLA-A2 molecules. Differential effects on peptide binding and CTL recognition. J Immunol 1994: 152: 1213-21.
5. Fleischhauer K, Kernan NA, O'Reilly RJ, Dupont B, Yang SY. Bone marrow-allograft rejection by T lymphocytes recognizing a single amino acid difference in HLA-B44. N Engl J Med 1990: 323: 1818-22.
6. Speiser DE, Tiercy JM, Rufer N et al. High-resolution HLA matching associated with decreased mortality after unrelated bone marrow transplantation. Blood 1996: 87: 4455-62.
7. Scharf SJ, Griffith RL, Erlich HA. Rapid typing of DNA sequence polymorphism at the HLA-DRB1 locus using the polymerase chain reaction and nonradioactive oligonucleotide probes. Hum Immunol 1991: 30: 190-201.
8. Ota M, Seki T, Fukushima H, Tsuji K, Inoko H. HLA-DRB1 genotyping by modified PCR-RFLP method combined with group-specific primers. Tissue Antigens 1992: 39: 187-202.
9. Olerup O, Zetterquist H. HLA-DR typing by PCR amplification with sequence specific primers (PCR-SSP) in 2 hours: an alternative to serological DR typing in clinical practice including donor-recipient matching in cadaveric transplantation. Tissue Antigens 1992: 39: 225-35.
10. Olerup O, Aldener A, Fogdell A. HLA-DQB1 and -DQA1 typing by PCR amplification with sequence-specific primers (PCR-SSP) in 2 hours. Tissue Antigens 1993: 41: 119-34.
11. Sengar DPS, Goldstein R. Comprehensive typing of DQB1 alleles by PCR-RFLP. Tissue Antigens 1994: 43: 242-8.
12. Zemmour J, Parham P. HLA class I nucleotide sequences. Tissue Antigens 1992: 41: 221-8.
13. Koller BH, Orr HT. Cloning and complete sequence of an HLA-A2 gene: analysis of two HLA-A alleles at the nucleotide level. J Immunol 1985: 134: 2727-33.
14. Holmes N, Ennis P, Wan AM, Denney DW, Parham P. Multiple genetic mechanisms have contributed to the generation of the HLA-A2/A28 family of class I MHC molecules. J Immunol 1987: 139: 936-41.
15. Campbell RD, Trowsdale J. Map of the human major histocompatibility complex. Immunol Today 1993: 14: 349-52.
16. Browning MJ, Krausa P, Rowan A, Bicknell DC, Bodmer JG, Bodmer WF. Tissue typing the HLA-A locus from genomic DNA by sequence-specific PCR: comparison of HLA genotype and surface expression on colorectal tumor cell lines. Proc Natl Acad Sci U S A 1993: 90: 2842-5.
17. Krausa P, Moses J, Bodmer WF, Bodmer JG, Browning MJ. HLA-A locus alleles identified by sequence specific PCR [letter]. Lancet 1993: 341: 121-2.
18. Oh SH, Fleischhauer K, Yang SY. Isoelectric focusing subtypes of HLA-A can be defined by oligonucleotide typing. Tissue Antigens 1993: 41: 135-42.
19. Krausa P, Bodmer JG, Browning MJ. Defining the common subtypes of HLA-A9, A10, A28 and A19 by use of ARMS/PCR. Tissue Antigens 1993: 42: 91-9.
20. Bugawan TL, Apple R, Erlich HA. A method for typing polymorphism at the HLA-A locus using PCR amplification and immobilized oligonucleotide probes. Tissue Antigens 1994: 44: 137-47.
21. Allen M, Liu L, Gyllensten U. A comprehensive polymerase chain reaction-oligonucleotide typing system for the HLA class I A locus. Hum Immunol 1994: 40: 25-32.
22. Gao X, Jakobsen IB, Serjeantson SW. Characterization of the HLA-A polymorphism by locus-specific polymerase chain reaction amplification and oligonucleotide hybridization. Hum Immunol 1994: 41: 267-79.
23. Blasczyk R, Hahn U, Wehling J, Huhn D, Salama A. Complete subtyping of the HLA-A locus by sequence-specific amplification followed by direct sequencing or single-strand conformation polymorphism analysis. Tissue Antigens 1995: 46: 86-95.
24. Bunce M, O'Neill CM, Barnardo MCNM et al. Phototyping: comprehensive DNA typing for HLA-A, B, C, DRB1, DRB3, DRB4, DRB5 & DQB1 by PCR with 144 primer mixes utilizing sequence-specific primers (PCR-SSP). Tissue Antigens 1995: 46: 355-67.
25. Date Y, Kimura A, Kato H, Sasazuki T. DNA typing of the HLA-A gene: population study and identification of four new alleles in Japanese. Tissue Antigens 1996: 47: 93-101.
26. Krausa P, Browning MJ. A comprehensive PCR-SSP typing system for identification of HLA-A locus alleles. Tissue Antigens 1996: 47: 237-44.
27. Kaneshige T, Hashimoto M, Matsumoto Y et al. Serologic and nucleotide sequencing analyses of a novel DR52-associated DRB1 allele with the DR 'NJ25' specificity, designated DRB1*1307. Hum Immunol 1994: 41: 151-9.
28. Bodmer JG, Marsh SGE, Albert ED et al. Nomenclature for factors of the HLA system, 1996. Tissue Antigens 1997: 49: 297-321.
29. Yang SY, Milfold E, Hammerling U, Dupont B. Description of the reference panel of B-lymphoblastoid cell lines for factors of the HLA system: the B-cell line panel designed for the tenth international histocompatibility workshop. In: Dupont B, ed. Immunology of HLA, vol 1. New York: Springer-Verlag, 1989: 11.
30. Prasad VK, Yang SY. Allele assignment for HLA-A, -B, and -C genes to the Tenth International Histocompatibility Workshop cell lines. Tissue Antigens 1996: 47: 538-46.
31. McGuire W, Hill AVS, Allsopp CEM, Greenwood BM, Kwiatkowski D. Variation in the TNF-α promoter region associated with susceptibility to cerebral malaria. Nature 1994: 371: 508-11.
32. Fraile A, Vinasco J, Nieto A, Pareja E, Martin J. Typing for TAP alleles using PCR-RFLP with amplification-created restriction sites. Tissue Antigens 1996: 47: 346-52.
33. Naruse TK, Ando R, Nose Y et al. HLA-DRB4 genotyping by PCR-RFLP: diversity in the associations between HLA-DRB4 and DRB1 alleles. Tissue Antigens 1997: 49: 152-9.