Conserved segment identification

Journal of Computational Biology

Volumn 4, Issue 4, 1997, Pages 559-565

  Sankoff, David ^a   Ferretti, Vincent ^a   Nadeau, Joseph H ^b  

^a UNIVERSITÉ DE MONTRÉAL   (Canada)

^b CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ALGORITHM; ARTICLE; CHROMOSOMAL LOCALIZATION; CHROMOSOME REARRANGEMENT; DNA SEQUENCE; GENE MAPPING; GENOME; HUMAN; MATHEMATICAL ANALYSIS; MOLECULAR BIOLOGY; MOUSE; NONHUMAN; PRIORITY JOURNAL;

EID: 0030700469     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.1997.4.559     Document Type: Article

References (11)

1. Copeland, N.G., Jenkins, N.A., Gilbert, D.J., Eppig, T., Maltais, L.J., Miller, J.C., Dietrich, W.F., Weaver, A., Lincoln, S.E., Steen, D.G., Stein, L.D., Nadeau, J.H., and Lander, E.S. 1993. A genetic linkage map of the mouse: current applications and future prospects. Science 262, 57-66.
2. Debry, R.W. and Seldin, M.F. 1996. Human/mouse homology relationships. Genomics 33, 337-351.
3. Updated in NCBI Web Site, http://www3.ncbi.nlm.nih.gov/Homology/.
4. Ferretti, V., Nadeau, J.H., and Sankoff, D. 1996. Original synteny. Proceedings of the Seventh Annual Symposium on Combinatorial Pattern Matching, Hirschberg, D. and Myers, G. eds., Springer Verlag Lecture Notes in Computer Science, 1075, 159-167.
5. Hannenhalli, S. and Pevzner, P.A. 1995a. Transforming cabbage into turnip. (polynomial algorithm for sorting signed permutations by reversals). Proceedings of the 27th Annual ACM-SIAM Symposium on the Theory of Computing, 178-189.
6. Hannenhalli, S. and Pevzner, P.A. 1995b. Transforming men into mice (polynomial algorithm for genomic distance problem). Proceedings of the IEEE 36th Annual Symposium on Foundations of Computer Science, 581-592.
7. Kececioglu, J. and Sankoff, D. 1995. Exact and approximation algorithms for sorting by reversals, with application to genome rearrangement. Algorithmica 13, 180-210.
8. Nadeau, J.H. and Taylor, B.A. 1984. Lengths of chromosomal segments conserved since divergence of man and mouse. Proceedings of the National Academy of Sciences USA, 81, 814-818.
9. Sankoff, D. and Ferretti, V. 1996. Karyotype distributions in a stochastic model of reciprocal translocation. Genome Research, 6, 1-9.
10. Sankoff, D., Ferretti, V., and Nadeau, J.H. 1997. Conserved segment identification. RECOMB 97. Proceedings of the First Annual International Conference on Computational Molecular Biology. ACM Press, New York, 252-256.
11. Sankoff, D. and Nadeau, J.H. Conserved synteny as a measure of genomic distance. Discrete Applied Mathematics 71, 247-257.