Secondary structures and starvation-induced frameshifting

Molecular Microbiology

Volumn 26, Issue 4, 1997, Pages 747-753

  Atkinson, Jenny ^a   Dodge, Matthew ^a   Gallant, Jonathan ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ARTICLE; CONTROLLED STUDY; ENZYME SYNTHESIS; MOUSE MAMMARY TUMOR ONCOVIRUS; NONHUMAN; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; RIBOSOMAL FRAMESHIFTING; STARVATION;

ANIMALIA; BACTERIA (MICROORGANISMS); MAMMARY TUMOR ONCOVIRUS; MOUSE MAMMARY TUMOR VIRUS; ONCOVIRINAE;

EID: 0030669975     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.1997.6101959.x     Document Type: Article

References (17)

1. Barak, Z., Lindsley, D., and Gallant, J. (1996) On the mechanism of leftward frameshifting at several hungry codons. J Mol Biol 256: 676-684.
2. Cattaneo, T. (1989) How 'hidden' reading frames are expressed. Trends Biochem Sci 14: 165-157.
3. Farabaugh, P.J. (1996) Programmed translational frameshifting. Microbiol Rev 60: 103-134.
4. Farabaugh, P.J. (1997)Programmed Alternative Reading of the Genetic Code. Austin, TX: R. G. Landes.
5. Gallant, J., and Lindsley, D. (1993) Ribosome frameshifting at hungry codons: sequences rules, directional specificity and possible relationship to mobile element behaviour. In The New Biology of Protein Synthesis, from a Biochemical Society Transactions Colloquium at the University of Sheffield, July, 1993, Biochem J 21: 817-823.
6. Hatfield, D., and Oroszlan, S. (1990) The where, what and how of ribosomal frameshifting in retroviral protein synthesis. Trends Biochem Sci 15: 186-124.
7. Hatfield, D., Levin, J., Rein, A., and Oroszlan, S. (1992) Translation suppression in retroviral gene expression. Adv in Virus Res 41: 193-239.
8. Jacks, T., and Varmus, H.E. (1985) Expression of the Rous sarcoma virus pol gene by ribosomal frameshifting. Science 230: 1237-1242.
9. Jaeger, J.A., Turner, D.H., and Zuker-M. (1989) Improved predictions of secondary structures for RNA. Proc Natl Acad Sci USA 86: 7706-7710.
10. Kolor, K., Lindley, D., and Gallant, J. (1993) On the role of P-site in leftward ribosome frameshifting at a hungry codon. J Mol Biol 230: 1-5.
11. Lindsley, D., and Gallant, J. (1993) On the directional specificity of a ribosomal frameshifting at a 'hungry' codon. Proc Natl Acad Sci USA 90: 5469-5473.
12. ten Dam, E., Pleij, C., and Bosch, L. (1990) RNA pseudoknots: translational frameshifting and readthrough of viral RNAs. Virus Genes 4: 121-136.
13. Weiss, R., and Gallant, J. (1983) Mechanism of ribosome frameshifting during translation of the genetic code. Nature 302: 389-393.
14. Weiss, R., and Gallant, J. (1986) Frameshifting suppression in aminoacyl-tRNA limited cells. Genetics 112: 727-739.
15. Weiss, R.B., Dunn, D.M., Shuh, M., Atkins, J.F., and Gesteland, R.F. (1989) E. coli ribosomes re-phase on retroviral frameshift signals at rates ranging from 2 to 50%. New Biol 1: 159-169.
16. Yelverton, E., Lindsley, D., Yamauchi, P., and Gallant, J. (1994) The function of a ribosomal frameshifting signal from human immunodeficiency virus-1 in Escherichia coli. Mol Microbiol 11: 303-313.
17. Zuker, M. (1989) On finding all suboptimal foldings of an RNA molecule. Science 244: 48-52.