Hammerhead ribozyme structure probed by cell extracts

Gene

Volumn 181, Issue 1-2, 1996, Pages 117-120

  Wang, Jian Ying ^a   Qiu, Lin ^a   Drlica, Karl ^a  

^a PUBLIC HEALTH RESEARCH INSTITUTE   (United States)

Author keywords

Escherichia coli extracts; Ribonuclease I; rna mutation; RNA structure

Indexed keywords

CELL EXTRACT; NUCLEASE; RIBOZYME;

ARTICLE; BINDING SITE; CONTROLLED STUDY; ENZYME ACTIVE SITE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; RNA DEGRADATION; RNA STRUCTURE;

BASE SEQUENCE; ESCHERICHIA COLI; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RIBONUCLEASES; RNA, BACTERIAL; RNA, CATALYTIC;

ESCHERICHIA COLI;

EID: 0030605244     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(96)00485-4     Document Type: Article

References (14)

1. Cannistraro, V. and Kennell, D. (1991) RNase I *, a form of RNase I, and mRNA degradation in Escherichia coli. J. Bacteriol 173, 4653-4659.
2. Donovan, W. and Kushner, S. (1986) Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turn-over in Escherichia coli K-12. Proc. Natl. Acad. Sci. USA 83, 120-124.
3. Durwald, H. and Hoffmann-Berling, H. (1968) Endonuclease I-deficient and ribonuclease I-deficient Escherichia coli mutants. J. Mol. Biol. 34, 331-346.
4. Haseloff, J. and Gerlach, W.L. (1988) Simple RNA enzymes with new and highly specific endoribonuclease activities. Nature 334, 585-591.
5. Hertel, K.J., Pardi, A., Uhlenbeck, O.C., Koizumi, M., Ohtsuka, E., Uesugi, S., Cedergren, R., Eckstein, F., Gerlach, W.L., Hodgson, R. and Symons, R.H. (1992) Numbering system for the hammerhead. Nucleic Acids Res. 20, 3252.
6. Hodgson, R.A.J., Shirley, N.J. and Symons, R.H. (1994) Probing the hammerhead ribozyme structure with ribonucleases. Nucleic Acids Res. 22, 1620-1625.
7. Levitz, R., Wang, J.-Y., Sioud, M. and Drlica, K. (1993) Expression of functional ribozymes in bacteria. Methods: Companion Methods Enzymol. 5, 29-35.
8. Melefors, O. and v. Gabain, A. (1988) Site-specific endonucleolytic cleavages and the regulation of stability of E. coli ompA mRNA. Cell 52, 893-901.
9. Miller, J. (1972) Experiments in Molecular Genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
10. Pley, H., Flaherty, K. and McKay, D. (1994) Three-dimensional structure of a hammerhead ribozyme. Nature 372, 68-74.
11. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning. A Laboratory Manual. Cold Spring Harbor Press, Cold Spring Harbor, NY.
12. Sioud, M. and Drlica, K. (1991) Prevention of HIV-1 integrase expression in E. coli by a ribozyme. Proc. Natl. Acad. Sci. USA 88, 7303-7307.
13. Sioud, M., Natvig, J. and Forre, O. (1992) Preformed ribozyme destroys tumor necrosis factor mRNA in human cells. J. Mol. Biol. 223, 831-835.
14. Wang, J.-Y., Qiu, L. and Drlica, K. (1996) Ribonucleases involved in ribozyme degradation in Escherichia coli. J. Bacteriol. 178, 1640-1645.