RNases involved in ribozyme degradation in Escherichia coli

Journal of Bacteriology

Volumn 178, Issue 6, 1996, Pages 1640-1645

  Wang, Jian Ying ^a   Qiu, Lin ^a   Wu, Erden Dalai ^a   Drlica, Karl ^a  

^a PUBLIC HEALTH RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; RIBONUCLEASE; RIBOZYME;

ARTICLE; ENZYME ACTIVITY; ENZYME DEGRADATION; ESCHERICHIA COLI; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA STRUCTURE; TEMPERATURE SENSITIVITY;

EID: 0029915249     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.178.6.1640-1645.1996     Document Type: Article

References (49)

1. Arendes, J., P. Carl, and A. Sugino. 1982. A mutation in the rnh-locus of Escherichia coli affects the structural gene for RNase H. J Biol. Chem. 257:4719-4722.
2. Bouvet, P., and J. Belasco. 1992 Control of RNase E-mediated RNA degradation by 5′-terminal base pairing in E. coli. Nature (London) 360:488-491.
3. Brosius, J., and A. Holy. 1984. Regulation of ribosomal RNA promoters with a synthetic lac operator. Proc. Natl Acad. Sci. USA 81:6929-6933.
4. Bruni, C. B., M. M. Rechler, and R. G. Martin. 1973. Salmonella typhimurium mutants lacking ribonuclease I. effect on the polarity of histidine mutants J. Bacteriol. 113:1207-1212.
5. Cameron, F., and D. Jennings. 1989. Specific gene suppression by engineered ribozymes in monkey cells. Proc. Natl. Acad Sci. USA 86:9139-9143.
6. Cannistraro, V., and D. Kennell. 1991. RNase I*, a form of RNase I, and mRNA degradation in Escherichia coli. J. Bacteriol. 173:4653-4659.
7. Cannistraro, V., and D. Kennell. 1993. The 5′ ends of RNA oligonucleolides in Escherichia coli and mRNA degradation. Eur. J. Biochem. 213:285-293.
8. Cotten, M., and M. Birnstiel, 1989. Ribozyme mediated destruction of RNA in vivo. EMBO J. 8:3861-3866.
9. Donovan, W., and S. Kushner. 1986 Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12. Proc. Natl. Acad. Sci. USA 83:120-124
10. Dropulic, B., N. Lin, M. Martin, and K.-T. Jeang. 1992. Functional characterization of a U5 ribozyme: intraccllular suppression of human immunodeficiency virus type 1 expression. J. Virol 66:1432-1441.
11. Durwald, H., and H. Hoffmann-Berling. 1968. Endonuclease I-deficient and ribonuclease I-deficient Esclierichia coli mutants. J. Mol. Biol. 34:331-346.
12. Edington, B. V., and R. S. Nelson. 1992. Utilization of ribozymes in plants, 209-221. In R. P. Erickson and J G. Izani (ed.), Gene regulation: biology of antisense RNA and DNA. Raven Press. Ltd., New York
13. Efrat, S., M. Leiser, Y.-J. Wu, D. Fusco-DeMane, O. A. Emran, M. Surana, T. L. Jetton, M. A. Magnuson, G. Weir, and N. Fleischer. 1994. Ribozyme-mediated attenuation of pancreatic β-cell glucokinase expression in transgenic mice results in impaired glucose-induced insulin secretion Proc. Natl Acad. Sci. USA 91:2051-2055.
14. Gegenheimer, P., and D. Apirion. 1978. Processing of rRNA by RNAase P: spacer tRNAs are linked to 16S rRNA in an RNAase P RNAase III mutant strain of E coli Cell 15:527-539.
15. Gegenheimer, P., N. Watson, and D. Apirion. 1977. Multiple pathways for primary processing of ribosomal RNA in Escherichia coli. J. Biol. Chem. 252:3064-3073.
16. Gesteland, R. F. 1966. Isolation and characterization of ribonuclease I mutants of Escherichia coli. J. Mol. Biol. 16:67-84.
17. Goldblum, K., and D. Apirion. 1981. Inactivation of the ribonucleic acid-processing enzyme ribonuclease E blocks cell division. J. Bacteriol. 146:128-132.
18. Haseloff, J., and W. L. Gerlach. 1988. Simple RNA enzymes with new and highly specific endoribonuclease activities. Nature (London) 334:585-591.
19. Heinrich, J.-C-. M. Tabler, and C. Louis. 1993. Attenuation of white gene expression in transgenic Drosophila melanogaster. possible role of a catalytic antisense RNA. Dev. Gen. 14:258-265.
20. Inokuehi, Y., N. Yuyama, A. Hirashima, S. Nishikawa, J. Ohkawa, and K. Taira. 1994. A hammerhead ribozyme inhibits the proliferation of an RNA cohphage SP in Escherichia coli. J. Biol. Chem. 269:11361-11366.
21. Kameyama, L., L. Fernandez, D. Court, and G. Guarneros. 1991. RNascIII activation of bacteriophage lambda N synthesis. Mol. Microbiol. 5:2953-2963.
22. Kaplan, R., and D. Aspirion. 1974. The involvement of ribonuclease 1, ribonuclease II. and polynucleotide phosphorylase in the degradation of stable ribonucleic acid during carbon starvation in Escherichia coli. J. Biol. Chem. 249:149-151.
23. Kobayashi, H., T. Dorai, J. F. Holland, and T. Ohnuma. 1993. Cleavage of human MDR1 mRNA by a hammerhead ribozyme. FEES Lett. 319:71-74.
24. Levitz, R., J.-Y. Wang, M. Sioud, and K. Drlica. 1993. Expression of functional ribozymes in bacteria. Methods 5:29-35.
25. L'Huillier, P. J., S. R. Davis, and A. R. Bellamy. 1992. Cytoplasmic delivery of ribozymes leads to efficient reduction in α-lactalbumin mRNA levels in C1271 mouse cells. EMBO J. 11:4411-4418.
26. Lieber, A., and M. Strauss. 1995 Selection of efficient cleavage sites in target RNAs by using a ribozyme expression library. Mol. Cell Biol. 15:540-551.
27. Lo, K., A. Biasolo, G. Dehni, G. Palu, and W. Haseltine. 1992. Inhibition of replication of HIV-1 by retroviral vectors expressing tat-antisense and anti-tat ribozyme RNA. Virology 190:176-183
28. Long, D., and O. C. Uhlenbeck. 1993. Self-cleaving catalytic RNA FASEB J 7:25-30.
29. Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
30. Misra, T., and D. Apirion. 1978. Characterization of an endonbonuclease, RNase N, from Escherichia coli. J. Biol. Chem. 253:5594-5599.
31. Misra, T., and D. Apirion. 1979. RNase F., an RNA processing enzyme from Eschenchia coli. J. Biol. Chem. 254:11154-11159.
32. Ojwang, J. O., A. Hampel, D. J. Looney, F. Wong-Staal, and J. Rappaport. 1992. Inhibition of human immunodeficiency virus type 1 expression by a hairpin ribozyme. Proc Natl. Acad. Sci. USA 89:10802-10806.
33. Perriman, R., A. Delves, and W. L. Gerlach. 1992. Extended target-site specificity for a hammerhead ribozyme. Gene 113:157-163.
34. Perriman, R., L. Graf, and W. L. Gerlach. 1993 A ribozyme that enhances gene suppression in tobacco protoplasts. Antisense Res. Dev. 3:253-263.
35. Pley, H. W., K. M. Flaherty, and D. B. McKay. 1994. Three-dimensional structure of a hammerhead ribozyme. Nature (London) 372:68-74.
36. Qiu, L., et al. Unpublished observations
37. Robertson, H., R. Webster, and N. Zinder. 1968. Purification and properties of ribonuclease III from Escherichia coli. J. Biol. Chem. 243:82-91
38. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
39. Sarver, N., E. M. Cantin, P. S. Chang, J. A. Zaia, P. A. Ladne, D. A. Stephens, and J. J. Rossi. 1990. Ribozymes as potential anti-HIV-1 therapeutic agents. Science 247:1222-1225
40. Saxena, S., and E. Ackerman. 1990 Ribozymes correctly cleave a model substrate and endogenous RNA in vivo J. Biol. Chem. 265:17106-17109.
41. Sioud, M., and K. Drlica. 1991. Prevention of HIV-1 integrase expression in E coli by a ribozyme. Proc Natl. Acad. Sci. USA 88:7303-7307.
42. Sioud, M., J. Natvig, and O. Forre. 1992. Preformed ribozyme destroys tumor necrosis factor mRNA in human cells. J Mol. Biol. 223:831-835.
43. Sioud, M., A. Opstad, J.-Q. Zhao, R. Levitz, C. Benhara, and K. Drlica. 1994. In vivo decay kinetic parameters of hammerhead ribozymes. Nucleic Acids Res. 22:5571-5575.
44. Srivasfava, R., N. Srivastava, and D. Apirion. 1992 Characterization of the RNA processing enzyme RNase ill from wild type and overexpressing Escherichia coli cells in processing natural RNA substrates Int. J. Biochem. 24:737-749.
45. Steinecke, P., T. Herget, and P. H. Schreier. 1992. Expression of a chimeric ribozyme gene results in endonucleolytic cleavage of target mRNA and a concomitant reduction of gene expression in vivo EMBO J 11:1525-1530.
46. Wall, J., and P. Harriman. 1974. Phage P1 mutants with altered transducing abilities for Escherichia coli. Virology 59:532-544.
47. Wang, J.-Y., L. Qiu, and K. Drlica. Unpublished observations.
48. Yu, M., J. Ojwang, O. Yamada, A. Hampel, J. Rapapport, D. Looney, and F. Wong-Staal. 1993. A hairpin ribozyme inhibits expression of diverse strains of human immunodeficiency virus type 1. Proc Natl. Acad. Sci. USA 90: 6340-6344
49. Zhao, J., and L. Pick. 1993. Generating loss of function phenotypes of the fushi tarazu gene with a targeted ribozyme in Drosophila. Nature (London) 365:448-4517