Generation of an integrated transcription map of the BRCA2 region on chromosome 13q12-q13

Genomics

Volumn 36, Issue 1, 1996, Pages 86-99

  Couch, Fergus J ^a   Rommens, Johanna M ^b,c   Neuhausen, Susan L ^d   Bélanger, Carole ^e   Dumont, Martine ^e   Abel, Kenneth ^f   Bell, Russell ^g   Berry, Simon ^g   Bogden, Robert ^g   Cannon Albright, Lisa ^d   Farid, Linda ^a   Frye, Cheryl ^g   Hattier, Thomas ^g   Janecki, Teresa ^g   Jiang, Ping ^g   Kehrer, Robert ^g   Leblanc, Jean Francois ^e   McArthur Morrison, Jodi ^b   McSweeney, David ^b   Miki, Yoshio ^h   Peng, Yi ^a   Samson, Carolle ^e   Schroeder, Marianne ^g   Snyder, Sarah C ^g   Stringfellow, Michael ^g   Stroup, Carrie ^g   Swedlund, Brad ^g   Swensen, Jeff ^d   Teng, David ^g   Thakur, Sanjay ^a   Tran, Thanh ^g   Tranchant, Martine ^e   Welver Feldhaus, Jane ^g   Wong, Alexander K C ^g   Shizuya, Hiroake ⁱ   Labrie, Fernand ^e   Skolnick, Mark H ^d,g   Goldgar, David E ^d,j   Kamb, Alexander ^g   Weber, Barbara L ^a   Tavtigian, Sean V ^g   Simard, Jacques ^e   more..

^a UNIVERSITY OF PENNSYLVANIA   (United States)

^b HOSPITAL FOR SICK CHILDREN RESEARCH INSTITUTE   (Canada)

^c UNIVERSITY OF TORONTO   (Canada)

^d UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

^e LAVAL UNIVERSITY   (Canada)

^f UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^g Myriad Genetic Laboratories   (United States)

^h CANCER INSTITUTE   (Japan)

ⁱ CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^j INTERNATIONAL AGENCY FOR RESEARCH ON CANCER   (France)

more..

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BREAST CANCER; CANCER SUSCEPTIBILITY; CHROMOSOMAL LOCALIZATION; CHROMOSOME 13Q; CHROMOSOME MAP; DNA LIBRARY; DNA SEQUENCE; EXON; GENE SEQUENCE; HYBRID; HYBRIDIZATION; PRIORITY JOURNAL; PSEUDOGENE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

CAENORHABDITIS ELEGANS; SACCHAROMYCES CEREVISIAE;

EID: 0030586901     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1996.0428     Document Type: Article

References (25)

1. Altschul, S., Gish, W., Miller, W., Myers, E., and Lipman, D. J. (1990). Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
2. Brody, L. C., Abel, K. J., Castilla, L. H., Couch, F. J., McKinley, D. R., Yin, G., Ho, P. P., Merajver, S., Chandrasekharappa, S. C., Xu, J., Cole, J. L., Struewing, J. P., Valdes, J. M., Collins, F. S., and Weber, B. L. (1995). Construction of a transcription map surrounding the BRCA1 locus of human chromosome 17. Genomics 25: 238-247.
3. Buckler, A. J., Chang, D. D., Graw, S. L., Brook, J. D., Haber, D. A., Sharp, P. A., and Housman, D. E. (1991). Exon amplification: A strategy to isolate mammalian genes based on RNA splicing. Proc. Natl. Acad. Sci. USA 88: 4005-4009.
4. Church, D. M., Stotler, C. J., Rutter, J. L., Murrell, J. R., Trofatter, J. A., and Buckler, A. J. (1994). Isolation of genes from complex sources of mammalian genomic DNA using exon amplification. Nature Genet. 6: 98-105.
5. Collins, F., and Galas, D. (1993). A new five-year plan for the U.S. Human Genome Project. Science 262: 43-46.
6. Harshman, K., Bell, R., Rosenthal, J., Katcher, H., Miki, Y., Swensen, J., Gholami, Z., Frye, C., Ding, W., and Dayananth, P. (1995). Comparison of the positional cloning methods used to isolate the BRCA1 gene. Hum. Mol. Genet. 4: 1259-1266.
7. Hochgeschwender, U. (1992). Toward a transcriptional map of the human genome. Trends Genet. 8: 41-44.
8. Lovett, M., Kere, J., and Hinton, L. M. (1991) Direct selection: A method for the isolation of cDNAs encoded by large genomic regions. Proc. Natl. Acad. Sci. USA 88: 9628-9632.
9. Neuhausen, S. L., Swensen, J., Miki, Y., Liu, Q., Tavtigian, S., Shattuck-Eidens, D., Kamb, A., Hobbs, M. R., Gingrich, J., Shizuya, H., Kim, U. J., Cochran, C., Futreal, P. A., Wiseman, R. W., Lynch, H. T., Tonin, P., Narod, S., Cannon-Albright, L., Skolnick, M. H., and Goldgar, D. (1994). A P1-based physical map of the region from D17S776 to D17S78 containing the breast cancer susceptibility gene BRCA1. Hum. Mol. Genet. 3: 1919-1926.
10. Parimoo, S., Patanjali, S. R., Shukla, H., Chaplin, D. D., and Weissman, S. M. (1991). cDNA selection: Efficient PCR approach for the selection of cDNAs encoded in large chromosomal DNA fragments. Proc. Natl. Acad. Sci. USA 88: 9623-9627.
11. Pearson, W. R., and Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85: 2444-2448.
12. Rommens, J., Durocher, F., McArthur, J., Tonin, P., Leblanc, J-F., Allen, T., Samson, C., Ferri, L., Narod, S., Morgan, K., and Simard, J. (1995). Generation of a transcription map at the HSD17B locus centromeric to BRCA1 at 17q21. Genomics 28: 530-542.
13. Rommens, J. M., Mar, L., McArthur, J., Tsui, L.-C., and Scherer, S. (1994). Towards a transcriptional map of the q21-q22 region of chromosome 7. In "Identification of Transcribed Sequences" (U. Hochgeschwender and K. Gardiner, Eds.), pp. 65-79, Plenum, New York.
14. Sanger, F., Nicklen, S., and Coulson, A. R. (1977). DNA sequencing with chain terminating inhibitors. Proc. Natl. Acad. Sci. USA 74: 5463-5467.
15. Schutte, M., da Costa, L. T., Hahn, S. A., Moskaluk, C., Hoque, A. T. M. S., Rozenblum, E., Weinstein, C. L., Bittner, M., Meltzer, P. S., Trent, J. M., Yeo, C. J., Hruban, R. H., and Kern, S. (1995a). Identification by representational difference analysis of a homozygous deletion in pancreatic carcinoma that lies within the BRCA2 region. Proc. Natl. Acad. Sci. USA 92: 5950-5954.
16. Schutte, M., Rozenblum, E., Moskaluk, C. A., Guan, X., Hoque, A. T., Hahn, S. A., da Costa, L. T., de Jong, P. J., and Kern, S. E. (1995b). An integrated high-resolution physical map of the DPC/ BRCA2 region at chromosome 13q12. Cancer Res. 55: 4570-4574.
17. Shizuya, H., Birren, B., Kim, U. J., Mancino, V., Slepak, T., Tachiiri, Y., and Simon, M. (1992). Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc. Natl. Acad. Sci. USA 89: 8794-8797.
18. Smith, S. W., Overbeek, R., Woese, C. R., Gilbert, W., and Gillevet, P. M. (1994). The genetic data environment an expandable GUI for multiple sequence analysis. Comput. Appl. Biosci. 10: 671-675.
19. Swensen, J. (1996). PCR with random primers to obtain sequence from yeast artificial chromosome insert ends or plasmids. Biotechniques 20: 486-491.
20. Tavtigian, S. V., Simard, J., Rommens, J., Shattuck-Eidens, D., Couch, F., Neuhausen, S., Merajver, S., Thorlacius, S., Offit, K., Stoppa-Lyonnet, D., Belanger, C., Bell, R., Berry, S., Bogden, R., Chen, Q. Davis, T., Dumont, M., Frye, C., Hattier, T., Jammulapati, S., Janecki, T., Jiang, P., Kehrer, R., Leblanc, J. F., Mitchell, J. T., Peng, Y., Samson, C., Schroeder, M., Snyder, S., Stringfellow, M., Stroup, C., Swedlund, B., Swensen, J., Teng, D., Thomas, A., Tran, T., Tranchant, M., Weaver-Feldhaus, J., Wong, A. K. C., Shizuya, H., Eyfjord, J. E., Cannon-Albright, L., Labrie, F., Skolnick, M., Weber, B., Kamb, A., and Goldgar, D. E. (1996). The complete BRCA2 gene and mutations in chromosome 13q-linked kindreds. Nature Genet. 12: 333-337.
21. Teng, D. H-F, Bogden, R., Mitchell, J., Baumgard, M., Bell, R., Berry, S., Davis, T., Ha, P. C., Kehrer, R., Jammulapati, S., Chen, Q., Offit, K., Skolnick, M. H., Tavtigian, S. V., Jhanwar, S., Swedlund, B., Wong, A. K. C., and Kamb, A. (1996). Low incidence of BRCA2 mutations in breast carcinoma and other cancers. Genomics 13: 241-244.
22. Thorlacius, S., Tryggvadottir, L., Olafsdottir, G. H., Jonasson, J. G., Ogmundsdottir, H. M., Tulinius, H., and Eyfjord, J. E. (1995). Linkage to BRCA2 region in hereditary male breast cancer. Lancet 346: 544-545.
23. UnerBacher, E. C., and Mural, R. (1991). Locating protein-coding regions in human DNA sequences by multiple sensor-neural network approach. Proc. Natl. Acad. Sci. USA 88: 11261-11265.
24. Wooster, R., Bignell, G., Lancaster, J., Swift, S., Seal, S., Mangion, J., Collins, N., Gregory, S., Gumbs, C., Micklem, G., Barfoot, R., Hamoudi, R., Patel, S., Rice, C., Biggs, P., Hashim, Y., Smith, A., Connor, F., Arason, A., Gudmundsson, J., Ficenec, D., Kelsell, D., Ford, D., Tonin, P., Bishop, D. T., Spurr, N. K., Ponder, B., Eeles, R., Peto, J., Devilee, P., Cornelisse, C., Lynch, H., Narod, S., Lenoir, G., Eglisson, V., Barkadottir, R. B., Easton, D. F., Bentley, D. R., Futreal, P. A., Ashworth, A., and Stratton, M. R. (1995). Identification of the breast cancer susceptibility gene BRCA2. Nature 378: 789-792.
25. Wooster, R., Neuhausen, S. L., Mangion, J., Quirk, Y., Ford, D., Collins, N., Nguyen, K., Seal, S., Tran, T., Averill, D., Fields, P., Marshall, G., Narod, S., Lenoir, G. M., Lynch, H., Feunteun, J., Devilee, P., Cornelisse, C. J., Menko, F. H., Daly, P. A., Orminston, W., McManus, R., Pye, C., Lewis, C. M., Cannon-Albright, L. A., Peto, B., Ponder, Skolnick, M. H., Easton, D. F., Goldgar, D., and Stratton, M. (1994). Localization of a breast cancer susceptibility gene, BRCA2, to chromosome 13q12-13. Science 265: 2088-2090.