Two-dimensional separation and cloning of chromosome 1 NotI-EcoRV- derived genomic fragments

Genomics

Volumn 38, Issue 2, 1996, Pages 124-132

  Wimmer, K ^a,d   Thoraval, D ^a   Asakawa, J ^a,b   Kuick, R ^a   Kodaira, M ^a,b   Lamb, B ^a   Fawcett, J ^c   Glover, T ^e   Cram, S ^c   Hanash, S ^a  

^a UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^b RADIATION EFFECTS RESEARCH FOUNDATION   (Japan)

^c LOS ALAMOS NATIONAL LABORATORY   (United States)

^d UNIVERSITY OF MICHIGAN   (United States)

^e NONE

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RESTRICTION ENDONUCLEASE;

ARTICLE; CHROMOSOME 1; CONTROLLED STUDY; GENE AMPLIFICATION; GENE DELETION; GENETIC VARIABILITY; GENOME; HUMAN; HUMAN CELL; MOLECULAR CLONING; PRIORITY JOURNAL; RESTRICTION FRAGMENT; TRINUCLEOTIDE REPEAT; TWO DIMENSIONAL GEL ELECTROPHORESIS;

EID: 0030474290     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1996.0607     Document Type: Article

References (22)

1. Asakawa, J., Kuick, R., Neel, J. V., Kodaira, M., Satoh, C., and Hanash, S. M. (1994). Quantitative genetic variation in two-dimensional preparations of fragments of restriction enzyme-digested genomic DNA. Proc. Natl. Acad. Sci. USA 91: 9052-9056.
2. Asakawa, J., Kuick, R., Neel, J. V., Kodaira, M., Satoh, C., and Hanash, S. M. (1995). Quantitative and qualitative genetic variation in two-dimensional DNA gels of human lymphocytoid cell lines. Electrophoresis 16: 241-252.
3. Bardi, G., Pandis, N., Fenger, C., Kronborg, O., Bomme, L., and Heim, S. (1993). Deletion of 1p36 as a primary chromosomal aberration in intestinal tumorigenesis. Cancer Res. 53: 1895-1898.
4. Caron, H., van Sluis, P., de Kraker, J., Bokkerink, J., Egeler, M., Laureys, G., Slater, R., et al. (1996). Allelic loss of chromosome 1p as a predictor of unfavorable outcome in patients with neuroblastoma. N. Engl. J. Med. 334: 225-230.
5. Cheng, N. C., Van Roy, N., Chan, A., Beitsma, M., Westerveld, A., Speleman, F., and Versteeg, R. (1995). Deletion mapping in neuroblastoma cell lines suggests two distinct tumor suppressor genes in the 1p35-36 region, only one of which is associated with N-myc amplification. Oncogene 10: 291-297.
6. Cram, L. S., Campbell, M., Fawcett, J. J., and Deaven, L. L. (1990). Polyamine buffer for bivariate human flow cytogenetic analysis and sorting. Methods Cell Biol. 33: 377-382.
7. Cross, S. H., Charlton, J. A., Nan, X., and Bird, A. P. (1994). Purification of CpG islands using a methylated DNA binding column. Nature Genet. 6: 236-244.
8. Dracopoli, N. C., Bruns, G. A. P., Brodeur, G. M., Landes, G. M., Matise, T. C., Seldin, M. F., Vance, J. M., et al. (1994). Report of the first international workshop on human chromosome 1 mapping 1994. Cytogenet. Cell Genet. 67: 144-165.
9. Fawcett, J. J., Longmire, J. L., Martin, J. C., Deaven, L. L., and Cram, L. S. (1994). Large-scale chromosome sorting. Methods Cell Biol. 42: 319-330.
10. Hatada, I., Hayashizaki, Y., Hirotsune, S., and Komatsubara, H. (1991). A genomic scanning method for higher organisms using restriction sites as landmarks. Proc. Natl. Acad. Sci. USA 88: 9523-9527.
11. Hirotsune, S., Hirose, K., Kataoka, H., Kuromitsu, J., Furuichi, Y., Muramatsu, M., Matsuda, Y., and Hayashizaki, Y. (1994). Spot mapping on the standard profile of restriction landmark genomic scanning (RLGS) of sorted chromosome 20 using methylation-insensitive enzyme. Genomics 24: 593-596.
12. Hoggard, N., Hey, Y., Brintnell, B., James, L., Jones, D., Mitchell, E., Weissenbach, J., et al. (1995). Identification and cloning in yeast artificial chromosomes of a region of elevated loss of heterozygosity on chromosome 1p31.1 in human breast cancer. Genomics 30: 233-243.
13. Kuick, R., Asakawa, J.-I., Neel, J. V., Kodaira, M., Satoh, C., Thoraval, D., Gonzalez, I. L., et al. (1996). Studies of the inheritance of human ribosomal DNA variants detected in two-dimensional separations of genomic restriction fragments. Genetics 144: 307-316.
14. Kuick, R., Asakawa, J.-I., Neel, J. V., Satoh, C., and Hanash, S. M. (1995). High yield of restriction fragment length polymorphisms in two-dimensional separations of human genomic DNA. Genomics 25: 345-353.
15. Larsen, F., Gundersen, G., Lopez, R., and Prydz, H. (1992a). CpG islands as gene markers in the human genome. Genomics 13: 1095-1107.
16. Larsen, F., Gundersen, G., and Prydz, H. (1992b). Choice of enzymes for mapping based on CpG islands in the human genome. Genet. Anat. Tech. Appl. 9: 80-85.
17. Lemieux, N., Dutrillaux, B., and Viegas-Pequignot, E. (1992). A simple method for simultaneous R-or G-banding and fluorescence in situ hybridization of small single-copy genes. Cytogenet. Cell Genet. 59: 311-312.
18. Lichter, P., Tang, C-J. C. T., Call, K., Hermanson, G., Evans, G. A., Housman, D., and Ward, D. C. (1990). High-resolution mapping of human chromosome 11 by in situ hybridization with cosmid clones. Science 247: 64-69.
19. Lindsay, S., and Bird, A. P. (1987). Use of restriction enzymes to detect potential gene sequences in mammalian DNA. Nature 327: 336-338.
20. Thoraval, D., Asakawa, J., Kodaira, M., Chang, C., Radany, E., Kuick, R., Lamb, B., et al. (1996). A methylated human 9 kb repetitive sequence on acrocentric chromosomes is homologous to a subtelomeric repeat in chimpanzees. Proc. Natl. Acad. Sci. USA 93: 4442-4447.
21. Thoraval, D., Asakawa, J.-I., Wimmer, K., Kuick, R., Lamb, B., Richardson, B., Ambros, P., et al. Demethylation of repetitive DNA sequences in neuroblastoma. Genes Chromosomes Cancer, in press.
22. Yoshikawa, H., de la Monte, S., Nagai, H., Wands, J. R., Matsubara, K., and Fujiyama, A. (1996). Chromosomal assignment of human genomic NotI restriction fragments in a two-dimensional electrophoresis profile. Genomics 31: 28-35.