Studies of the inheritance of human ribosomal DNA variants detected in two-dimensional separations of genomic restriction fragments

Genetics

Volumn 144, Issue 1, 1996, Pages 307-316

  Kuick, Rork ^a,d   Asakawa, Jun Ichi ^b   Neel, James V ^c   Kodaira, Mieko ^a   Satoh, Chiyoko ^b   Thoraval, Didier ^c   Gonzalez, Iris L ^a   Hanash, Samir M ^b  

^a UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^b RADIATION EFFECTS RESEARCH FOUNDATION   (Japan)

^c DREXEL UNIVERSITY COLLEGE OF MEDICINE   (United States)

^d UNIVERSITY OF MICHIGAN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA;

ARTICLE; CHROMATID EXCHANGE; DNA SEQUENCE; ELECTROPHORESIS; GENE CONVERSION; HUMAN; HUMAN CELL; INHERITANCE; PRIORITY JOURNAL; RESTRICTION FRAGMENT; SEQUENCE ANALYSIS;

BASE SEQUENCE; BINDING SITES; CELL LINE, TRANSFORMED; CHILD; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA, RIBOSOMAL; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; FEMALE; GENOME, HUMAN; HUMANS; MALE; MOLECULAR SEQUENCE DATA; REPETITIVE SEQUENCES, NUCLEIC ACID; RESTRICTION MAPPING; VARIATION (GENETICS);

EID: 0029780749     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (29)

1. ARNHEIM, N., M. KRYSTAL, R. SCHMICKEL, G. WILSON, O. ROYDER et at., 1980 Molecular evidence for genetic exchanges among ribosomal genes on nonhomologous chromosomes in man and apes. Proc. Natl. Acad. Sci. USA 77: 7323-7327.
2. ASAKAWA, J., R. KUICK, J. V. NEEL, M. KODAIRA, C. SATOH et al., 1994 Quantitative genetic variation in two-dimensional preparations of fragments of restriction enzyme-digested genomic DNA. Proc. Natl. Acad. Sci. USA 91: 9052-9056.
3. ASAKAWA, J., R. KUICK J. V. NEEL, M. KODAIRA, C. SATOH et al., 1995 Quantitative and qualitative genetic variation in two-dimensional DNA gels of human lymphocytoid cell lines. Electrophoresis 16: 241-252.
4. BROWN, D. D., P. C. WENSINK and E. JORDAN, 1972 A comparison of the ribosomal DNA's of Xenopus laevis and Xenopus mulleri: the evolution of tandem genes. J. Mol. Biol. 63: 57-73.
5. DOVER, G., 1982 Molecular drive: a cohesive mode of species evolution. Nature 299: 111-117.
6. ERICKSON, J. M., and R. D. SCHMICKEL, 1985 A molecular basis for discrete size variation in human ribosomal DNA. Am. J. Hum. Genet. 37:311-325.
7. FINANCSEK, I., K. MIZUMOTO, Y. MISHIMA and M. MURAMATSU, 1982 Human ribosomal RNA gene: nucleotide sequence of the transcription initiation region and comparison of three mammalian genes. Proc. Natl. Acad. Sci. USA 79: 3092-3096.
8. GONZALEZ, I. L., and J. E. SYLVESTER, 1995 Complete sequence of the 43-kb human ribosomal DNA repeat: analysis of the intergenic spacer. Genomics 27: 320-328.
9. GONZALEZ, I. L., J. L. GORSKI, T. J. CAMPEN, D. J. DORNEY, J. M. ERICKSON et al., 1985 Variation among human 28S ribosomal RNA genes. Proc. Natl. Acad. Sci. USA 82: 7666-7670.
10. GONZALEZ, I. L., C. CHAMBERS, J. L. GORSKI, D. STAMBOLIAN, R. D. SCHMICKEL et al., 1990 Sequence and structure correlation of human ribosomal transcribed spacers. J. Mol. Biol. 212: 27-35.
11. GONZALEZ, I. L., S. TUGENDREICH, P. HIETER and J. E. SYLVESTER, 1993 Fixation times of retroposons in the ribosomal DNA spacer of human and other primates. Genomics 18: 29-36.
12. HATADA, I., Y. HAYASIIIZAKI, S. HIROTSUNE, and H. KOMATSUBARA, 1991 A genomic scanning method for higher organisms using restriction sites as landmarks. Proc. Natl. Acad. Sci. USA 88: 9523-9527.
13. HAYASHIZAKI, Y., S. HIROTSUNE, Y. OKAZAKI, H. SHIBATA, A. AKASAKO et al., 1994 A genetic linkage map of the mouse using restriction landmark genomic scanning (RLGS). Genetics 138: 1207-1238.
14. HENDERSON, A. S., D. WARBURTON and K. C. ATWOOD, 1972 Location of ribosomal DNA in the human chromosome complement. Proc. Natl. Acad. Sci. USA 69: 3394-3398.
15. HIROTSUNE, S., I. HATADA, H. KOMATSUBARA, H. NAGAI, K. KUMA et al., 1992 New approach for detection of amplification in cancer DNA using restriction landmark genomic scanning. Cancer Res. 52: 3642-3647.
16. KRYSTAL, M., and N. ARNHEIM, 1978 Length heterogeneity in a region of the human ribosomal gene spacer is not accompanied by extensive population polymorphism. J. Mol. Biol. 126: 91-104.
17. KUICK, R., J. ASAKAWA, J. V. NEEL, C. SATOH and S. M. HANASH, 1995 High yield of restriction fragment length polymorphisms in twodimensional separations of human genomic DNA. Genomics 25: 345-353.
18. LA VOLPE, A., A. SIMEONE, M. D'ESPOSITO, L. SCOTTO, V. FIDANZA et al., 1985 Molecular analysis of the heterogeneity region of the human ribosomal spacer. J. Mol. Biol. 183: 213-223.
19. LEFFERS, H., and A. H. ANDERSEN, 1993 The sequence of 28S ribosomal RNA varies within and between human cell lines. Nucleic Acids Res. 21: 1449-1455.
20. MADEN, E. H., C. L. DENT, T. E. FARRELL, J. GARDE, F. S. MCCALLUM et al., 1987 Clones of human ribosomal DNA containing the complete 18S-rRNA and 28S-rRNA genes. Biochemistry J. 246: 519-527.
21. NAGAI, H., M. PONGLIKITMONGKOL, E. MITA, Y. OHMACHI, H. YOSHIKAWA et al., 1994 Aberration of genomic DNA in association with human hepatocellular carcinomas detected by 2-dimensional gel analysis. Cancer Res. 54: 1545-1550.
22. OHSUMI, T., Y. OKAZAKI, H. OKUIZUMI, K. SHIBATA, T. HANAMI et al., 1995 Loss of heterozygosity in chromosomes 1, 5, 7 and 13 in mouse hepatoma detected by systematic genome-wide scanning using RLGS genetic map. Biochem. Biophys. Res. Commun. 212: 632-639.
23. SAKAI, K., T. OHTA, S. MINOSHIMA, J. KUDOH, Y. WANG et al., 1995 Human ribosomal RNA gene cluster: identification of the proximal end containing a novel tandem repeat sequence. Genomics 26: 521-526.
24. SCHMICKEL, R. D., I. L. GONZALEZ and J. M. ERICKSON, 1985 Nucleolus organizing genes on chromosome 21: recombination and nondisjunction. Annu. NY Acad. Sci. 450: 121-131.
25. SMITH, G. P., 1976 Evolution of repeated DNA sequences by unequal crossover. Science 191: 528-535.
26. VOGEL, F., and R. RATHENBERG, 1975 Spontaneous mutation in man. Adv. Hum. Genet. 5: 223-318.
27. WELLAUER, P. K., and I. B. DAWID, 1973 Secondary structure maps of RNA: processing of HeLa ribosomal RNA. Proc. Natl. Acad. Sci. USA 70: 2827-2831.
28. WILSON, G. N., B. A. HOLLAR, J. R. WATERSON and R. D. SCHMICKEL, 1978 Molecular analysis of cloned human 18S ribosomal DNA segments. Proc. Natl. Acad. Sci. USA 75: 5367-5371.
29. WORTON, R. G., J. SUTHERLAND, J. E. SYLVESTER, H. F. WILLARD, S. BODRUG et al., 1988 Human ribosomal RNA genes: orientation of the tandem array and conservation of the 5′ end. Science 239: 64-68.